Small RNAs Control Sodium Channel Expression, Nociceptor Excitability, and Pain Thresholds

To examine the role of small RNAs in peripheral pain pathways, we deleted the enzyme Dicer in mouse postmitotic damage-sensing neurons. We used a Nav1.8-Cre mouse to target those nociceptors important for inflammatory pain. The conditional null mice were healthy with a normal number of sensory neurons and normal acute pain thresholds. Behavioral studies showed that inflammatory pain was attenuated or abolished. Inflammatory mediators failed to enhance excitability of Nav1.8+ sensory neurons from null mutant mice. Acute noxious input into the dorsal horn of the spinal cord was apparently normal, but the increased input associated with inflammatory pain measured using c-Fos staining was diminished. Microarray and quantitative real-time reverse-transcription PCR (qRT-PCR) analysis showed that Dicer deletion lead to the upregulation of many broadly expressed mRNA transcripts in dorsal root ganglia. By contrast, nociceptor-associated mRNA transcripts (e.g., Nav1.8, P2xr3, and Runx-1) were downregulated, resulting in lower levels of protein and functional expression. qRT-PCR analysis also showed lowered levels of expression of nociceptor-specific pre-mRNA transcripts. MicroRNA microarray and deep sequencing identified known and novel nociceptor microRNAs in mouse Nav1.8+ sensory neurons that may regulate nociceptor gene expression.

[1]  Matthias Merkenschlager,et al.  T cell lineage choice and differentiation in the absence of the RNase III enzyme Dicer , 2005, The Journal of experimental medicine.

[2]  Anton J. Enright,et al.  Materials and Methods Figs. S1 to S4 Tables S1 to S5 References and Notes Micrornas Regulate Brain Morphogenesis in Zebrafish , 2022 .

[3]  Murat Gunel,et al.  Sequence Variants in SLITRK1 Are Associated with Tourette's Syndrome , 2005, Science.

[4]  Ottavio Arancio,et al.  Presynaptic CaMKII Is Necessary for Synaptic Plasticity in Cultured Hippocampal Neurons , 2004, Neuron.

[5]  Patrick Delmas,et al.  Inflammatory Mediators Increase Nav1.9 Current and Excitability in Nociceptors through a Coincident Detection Mechanism , 2008, The Journal of general physiology.

[6]  S. McMahon,et al.  Nociceptor-derived brain-derived neurotrophic factor regulates acute and inflammatory but not neuropathic pain , 2006, Molecular and Cellular Neuroscience.

[7]  J. Levine,et al.  PLC-β3 signals upstream of PKCε in acute and chronic inflammatory hyperalgesia , 2007, Pain.

[8]  Stijn van Dongen,et al.  miRBase: microRNA sequences, targets and gene nomenclature , 2005, Nucleic Acids Res..

[9]  L. Djouhri,et al.  Spontaneous Pain, Both Neuropathic and Inflammatory, Is Related to Frequency of Spontaneous Firing in Intact C-Fiber Nociceptors , 2006, The Journal of Neuroscience.

[10]  Michael T. McManus,et al.  Conditional Loss of Dicer Disrupts Cellular and Tissue Morphogenesis in the Cortex and Hippocampus , 2008, The Journal of Neuroscience.

[11]  S. Hunt,et al.  Induction of c-fos-like protein in spinal cord neurons following sensory stimulation , 1987, Nature.

[12]  S. Boyce,et al.  The tetrodotoxin-resistant sodium channel SNS has a specialized function in pain pathways , 1999, Nature Neuroscience.

[13]  Michael Zhao,et al.  TRPA1 mediates formalin-induced pain , 2007, Proceedings of the National Academy of Sciences.

[14]  Sensory neuron sodium channel Nav1.8 is essential for pain at low temperatures , 2007, Nature.

[15]  G. Forlani,et al.  Nociceptor-specific gene deletion using heterozygous NaV1.8-Cre recombinase mice , 2005, Pain.

[16]  R. Durbin,et al.  Mapping Quality Scores Mapping Short Dna Sequencing Reads and Calling Variants Using P

, 2022 .

[17]  T. Lever,et al.  The FASEB Journal • Research Communication RNAi pathway is functional in peripheral nerve axons , 2022 .

[18]  Zihua Hu,et al.  MicroRNA targets in immune genes and the Dicer/Argonaute and ARE machinery components. , 2008, Molecular immunology.

[19]  Lin He,et al.  MicroRNAs: small RNAs with a big role in gene regulation , 2004, Nature Reviews Genetics.

[20]  J. Levine,et al.  PLC-beta 3 signals upstream of PKC epsilon in acute and chronic inflammatory hyperalgesia. , 2007, Pain.

[21]  S. Dib-Hajj,et al.  SNS Na+ channel expression increases in dorsal root ganglion neurons in the carrageenan inflammatory pain model , 1998, Neuroreport.

[22]  C. Asante,et al.  The Cell and Molecular Basis of Mechanical, Cold, and Inflammatory Pain , 2008, Science.

[23]  Stijn van Dongen,et al.  miRBase: tools for microRNA genomics , 2007, Nucleic Acids Res..

[24]  T. Tomasi,et al.  Dicer is regulated by cellular stresses and interferons. , 2009, Molecular immunology.

[25]  J. Castle,et al.  Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs , 2005, Nature.

[26]  A. Delacourte,et al.  Loss of microRNA cluster miR-29a/b-1 in sporadic Alzheimer's disease correlates with increased BACE1/β-secretase expression , 2008, Proceedings of the National Academy of Sciences.

[27]  Olga Varlamova,et al.  A cAMP-response element binding protein-induced microRNA regulates neuronal morphogenesis. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[28]  F. Hucho,et al.  Identification of versican as an isolectin B4‐binding glycoprotein from mammalian spinal cord tissue , 2005, The FEBS journal.

[29]  R. Elde,et al.  Identification of some lectin IB4 binding proteins in rat dorsal root ganglia , 2004, Neuroreport.

[30]  W. Snider,et al.  “Runx”ing towards Sensory Differentiation , 2006, Neuron.

[31]  Gene W. Yeo,et al.  Divergent Transcription from Active Promoters , 2008, Science.

[32]  J. Levine,et al.  A tetrodotoxin-resistant sodium current mediates inflammatory pain in the rat , 1998, Neuroscience Letters.

[33]  M. Cairns,et al.  Dysregulation of miRNA 181b in the temporal cortex in schizophrenia. , 2008, Human molecular genetics.

[34]  Leighton J. Core,et al.  Nascent RNA Sequencing Reveals Widespread Pausing and Divergent Initiation at Human Promoters , 2008, Science.

[35]  N. Rajewsky,et al.  Discovering microRNAs from deep sequencing data using miRDeep , 2008, Nature Biotechnology.

[36]  Michael E. Greenberg,et al.  A brain-specific microRNA regulates dendritic spine development , 2006, Nature.

[37]  F. Lee,et al.  Neurotrophin signalling in health and disease. , 2006, Clinical science.

[38]  Shobha Vasudevan,et al.  Cell cycle control of microRNA-mediated translation regulation , 2008, Cell cycle.

[39]  J. Wood,et al.  Tamoxifen‐inducible NaV1.8‐CreERT2 recombinase activity in nociceptive neurons of dorsal root ganglia , 2006, Genesis.

[40]  G. Forlani,et al.  Nociceptor-specific gene deletion reveals a major role for Nav1.7 (PN1) in acute and inflammatory pain. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[41]  Ronald Dubner,et al.  A novel behavioral model of neuropathic pain disorders produced in rats by partial sciatic nerve injury , 1990, Pain.

[42]  D. Corey,et al.  Activating gene expression in mammalian cells with promoter-targeted duplex RNAs. , 2007, Nature chemical biology.

[43]  Kazunari Taira,et al.  A Small Modulatory dsRNA Specifies the Fate of Adult Neural Stem Cells , 2004, Cell.

[44]  S. R. Wickramasinghe,et al.  A Hierarchical NGF Signaling Cascade Controls Ret-Dependent and Ret-Independent Events during Development of Nonpeptidergic DRG Neurons , 2007, Neuron.

[45]  Thomas Tuschl,et al.  Identification of microRNAs and other small regulatory RNAs using cDNA library sequencing. , 2008, Methods.

[46]  S. Kash,et al.  Contribution of the tetrodotoxin-resistant voltage-gated sodium channel NaV1.9 to sensory transmission and nociceptive behavior. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[47]  R. Elde,et al.  Enzymes that synthesize the IB4 epitope are not sufficient to impart IB4 binding in dorsal root ganglia of rat , 2007, The Journal of comparative neurology.

[48]  Rainer Cramer,et al.  Proteomic profiling of neuromas reveals alterations in protein composition and local protein synthesis in hyper-excitable nerves , 2008, Molecular pain.

[49]  D. Bartel MicroRNAs Genomics, Biogenesis, Mechanism, and Function , 2004, Cell.

[50]  R. Place,et al.  MicroRNA-373 induces expression of genes with complementary promoter sequences , 2008, Proceedings of the National Academy of Sciences.

[51]  P. Greengard,et al.  Cerebellar neurodegeneration in the absence of microRNAs , 2007, The Journal of experimental medicine.

[52]  A. Dickenson,et al.  Deletion of Annexin 2 Light Chain p11 in Nociceptors Causes Deficits in Somatosensory Coding and Pain Behavior , 2006, The Journal of Neuroscience.

[53]  K. Kinzler,et al.  The Antisense Transcriptomes of Human Cells , 2008, Science.

[54]  P. Marsden,et al.  Extensive variation in the 5'-UTR of Dicer mRNAs influences translational efficiency. , 2005, Biochemical and biophysical research communications.

[55]  Gail Mandel,et al.  Reciprocal actions of REST and a microRNA promote neuronal identity , 2006, Proceedings of the National Academy of Sciences of the United States of America.

[56]  Stephen G Waxman,et al.  GTP‐induced tetrodotoxin‐resistant Na+ current regulates excitability in mouse and rat small diameter sensory neurones , 2003, The Journal of physiology.

[57]  K. Morris,et al.  Bidirectional Transcription Directs Both Transcriptional Gene Activation and Suppression in Human Cells , 2008, PLoS genetics.

[58]  J. Boorman,et al.  Voltage-gated sodium channels and pain pathways. , 2004, Journal of neurobiology.

[59]  R. Shiekhattar,et al.  TRBP recruits the Dicer complex to Ago2 for microRNA processing and gene silencing , 2005, Nature.

[60]  Sam Griffiths-Jones,et al.  The microRNA Registry , 2004, Nucleic Acids Res..