High Epitope Expression Levels Increase Competition between T Cells

Both theoretical predictions and experimental findings suggest that T cell populations can compete with each other. There is some debate on whether T cells compete for aspecific stimuli, such as access to the surface on antigen-presenting cells (APCs) or for specific stimuli, such as their cognate epitope ligand. We have developed an individual-based computer simulation model to study T cell competition. Our model shows that the expression level of foreign epitopes per APC determines whether T cell competition is mainly for specific or aspecific stimuli. Under low epitope expression, competition is mainly for the specific epitope stimuli, and, hence, different epitope-specific T cell populations coexist readily. However, if epitope expression levels are high, aspecific competition becomes more important. Such between-specificity competition can lead to competitive exclusion between different epitope-specific T cell populations. Our model allows us to delineate the circumstances that facilitate coexistence of T cells of different epitope specificity. Understanding mechanisms of T cell coexistence has important practical implications for immune therapies that require a broad immune response.

[1]  P. Klenerman,et al.  Positive selection of HIV-1 cytotoxic T lymphocyte escape variants during primary infection. , 1997, Proceedings of the National Academy of Sciences of the United States of America.

[2]  L. Parijs,et al.  A Bcl-2-dependent molecular timer regulates the lifespan and immunogenicity of dendritic cells , 2004, Nature Immunology.

[3]  S. Tonegawa,et al.  Differences in the level of expression of class I major histocompatibility complex proteins on thymic epithelial and dendritic cells influence the decision of immature thymocytes between positive and negative selection. , 1998, Proceedings of the National Academy of Sciences of the United States of America.

[4]  H. Günthard,et al.  Stimulation of HIV-specific cellular immunity by structured treatment interruption fails to enhance viral control in chronic HIV infection , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[5]  Susan M. Kaech,et al.  Memory CD8+ T cell differentiation: initial antigen encounter triggers a developmental program in naïve cells , 2001, Nature Immunology.

[6]  Rustom Antia,et al.  Quantifying cell turnover using CFSE data. , 2005, Journal of immunological methods.

[7]  Yoshiyuki Nagai,et al.  Impaired Processing and Presentation of Cytotoxic-T-Lymphocyte (CTL) Epitopes Are Major Escape Mechanisms from CTL Immune Pressure in Human Immunodeficiency Virus Type 1 Infection , 2004, Journal of Virology.

[8]  P. J. Hughesdon,et al.  The Struggle for Existence , 1927, Nature.

[9]  J. Yewdell,et al.  Immunodominance in major histocompatibility complex class I-restricted T lymphocyte responses. , 1999, Annual review of immunology.

[10]  Bin Li,et al.  Full-Breadth Analysis of CD8+ T-Cell Responses in Acute Hepatitis C Virus Infection and Early Therapy , 2005, Journal of Virology.

[11]  Yan Zhang,et al.  Rapid turnover of T cells in acute infectious mononucleosis , 2003, European journal of immunology.

[12]  A S Perelson,et al.  Towards a general function describing T cell proliferation. , 1995, Journal of theoretical biology.

[13]  Ed van der Heeft,et al.  Dynamics of measles virus protein expression are reflected in the MHC class I epitope display. , 2003, Molecular immunology.

[14]  H. Eisen,et al.  Evidence that a single peptide-MHC complex on a target cell can elicit a cytolytic T cell response. , 1996, Immunity.

[15]  Paul G. Thomas,et al.  Consequences of Immunodominant Epitope Deletion for Minor Influenza Virus-Specific CD8+-T-Cell Responses , 2005, Journal of Virology.

[16]  Rolf M. Zinkernagel,et al.  Immunology Taught by Viruses , 1996, Science.

[17]  Claude Perreault,et al.  Immunodomination results from functional differences between competing CTL , 2001, European journal of immunology.

[18]  R C Brower,et al.  Minimal requirements for peptide mediated activation of CD8+ CTL. , 1994, Molecular immunology.

[19]  Philippa Marrack,et al.  T cells down-modulate peptide-MHC complexes on APCs in vivo , 2002, Nature Immunology.

[20]  H. Rammensee,et al.  Identification of naturally processed viral nonapeptides allows their quantification in infected cells and suggests an allele-specific T cell epitope forecast , 1991, The Journal of experimental medicine.

[21]  Eric G. Pamer,et al.  Noncompetitive Expansion of Cytotoxic T Lymphocytes Specific for Different Antigens during Bacterial Infection , 1999, Infection and Immunity.

[22]  Miles P. Davenport,et al.  HIV-1 Variation Diminishes CD4 T Lymphocyte Recognition , 1998, The Journal of experimental medicine.

[23]  Alan S. Perelson,et al.  Quantification of Cell Turnover Kinetics Using 5-Bromo-2′-deoxyuridine1 , 2000, The Journal of Immunology.

[24]  Eric G. Pamer,et al.  Early Programming of T Cell Populations Responding to Bacterial Infection1 , 2000, The Journal of Immunology.

[25]  K. Gould,et al.  Competition Between MHC Class I Alleles for Cell Surface Expression Alters CTL Responses to Influenza A Virus1 , 2002, The Journal of Immunology.

[26]  Jonathan W. Yewdell,et al.  Reversal in the Immunodominance Hierarchy in Secondary CD8+ T Cell Responses to Influenza A Virus: Roles for Cross-Presentation and Lysis-Independent Immunodomination1 , 2004, The Journal of Immunology.

[27]  Marcus Groettrup,et al.  Immunoproteasomes Down-Regulate Presentation of a Subdominant T Cell Epitope from Lymphocytic Choriomeningitis Virus1 , 2004, The Journal of Immunology.

[28]  Rolf M. Zinkernagel,et al.  Virus persistence in acutely infected immunocompetent mice by exhaustion of antiviral cytotoxic effector T cells , 1993, Nature.

[29]  Rustom Antia,et al.  Estimating the Precursor Frequency of Naive Antigen-specific CD8 T Cells , 2002, The Journal of experimental medicine.

[30]  Rustom Antia,et al.  The role of models in understanding CD8+ T-cell memory , 2005, Nature Reviews Immunology.

[31]  Mark M. Davis,et al.  Direct observation of ligand recognition by T cells , 2002, Nature.

[32]  Eric G. Pamer,et al.  Cutting Edge: Antigen-Independent CD8 T Cell Proliferation , 2001, The Journal of Immunology.

[33]  Hans Hengartner,et al.  A protective cytotoxic T cell response to a subdominant epitope is influenced by the stability of the MHC class I/peptide complex and the overall spectrum of viral peptides generated within infected cells , 1998, European journal of immunology.

[34]  H. Rammensee,et al.  Identification and quantification of a naturally presented peptide as recognized by cytotoxic T lymphocytes specific for an immunogenic tumor variant. , 1992, International immunology.

[35]  S. Stevanović,et al.  Quantitative aspects of T cell activation--peptide generation and editing by MHC class I molecules. , 1999, Seminars in immunology.

[36]  Robert E. Johnston,et al.  A Novel Viral System for Generating Antigen-Specific T Cells1 , 2005, The Journal of Immunology.

[37]  Stephen P. Schoenberger,et al.  Naïve CTLs require a single brief period of antigenic stimulation for clonal expansion and differentiation , 2001, Nature Immunology.

[38]  C Oseroff,et al.  Identification of Db- and Kb-restricted subdominant cytotoxic T-cell responses in lymphocytic choriomeningitis virus-infected mice. , 1998, Virology.

[39]  Antonio Lanzavecchia,et al.  Lack of fair play in the T cell response , 2002, Nature Immunology.

[40]  W Chen,et al.  Dissecting the multifactorial causes of immunodominance in class I-restricted T cell responses to viruses. , 2000, Immunity.

[41]  S. Henrickson,et al.  T-cell priming by dendritic cells in lymph nodes occurs in three distinct phases , 2004, Nature.

[42]  Philippe Bousso,et al.  Dynamics of CD8+ T cell priming by dendritic cells in intact lymph nodes , 2003, Nature Immunology.

[43]  J. Hayball,et al.  CD4+ T cells cross‐compete for MHC class II‐restricted peptide antigen complexes on the surface of antigen presenting cells , 2004, Immunology and cell biology.

[44]  Annette Oxenius,et al.  T lymphocyte responses against human parvovirus B19: small virus, big response. , 2002, Pathologie-biologie.

[45]  J. Goodman Commentary I , 1990, The Lancet.

[46]  M. Luscher,et al.  Peptide binding to class I MHC on living cells and quantitation of complexes required for CTL lysis , 1991, Nature.

[47]  J. Borghans,et al.  Competition for antigenic sites during T cell proliferation: a mathematical interpretation of in vitro data. , 1999, Proceedings of the National Academy of Sciences of the United States of America.

[48]  Xiping Wei,et al.  Antiviral pressure exerted by HIV-l-specific cytotoxic T lymphocytes (CTLs) during primary infection demonstrated by rapid selection of CTL escape virus , 1997, Nature Medicine.

[49]  B. Walker,et al.  An optimal viral peptide recognized by CD8+ T cells binds very tightly to the restricting class I major histocompatibility complex protein on intact cells but not to the purified class I protein. , 1991, Proceedings of the National Academy of Sciences of the United States of America.

[50]  J. Yewdell,et al.  Immunodominance in TCD8+ responses to viruses: cell biology, cellular immunology, and mathematical models. , 2004, Immunity.

[51]  Klas Kärre,et al.  T cell competition for the antigen‐presenting cell as a model for immunodominance in the cytotoxic T lymphocyte response against minor histocompatibility antigens , 1999, European journal of immunology.

[52]  C. Melief,et al.  Mini‐review: Regulation of cytotoxic T lymphocyte responses by dendritic cells: peaceful coexistence of cross‐priming and direct priming? , 2003, European journal of immunology.

[53]  H. K. Altes,et al.  The race between initial T–helper expansion and virus growth upon HIV infection influences polyclonality of the response and viral set–point , 2003, Proceedings of the Royal Society of London. Series B: Biological Sciences.

[54]  Ed van der Heeft,et al.  Autoreactivity against induced or upregulated abundant self-peptides in HLA-A*0201 following measles virus infection. , 2003, Human immunology.

[55]  Michael Basler,et al.  Immunodominance of an Antiviral Cytotoxic T Cell Response Is Shaped by the Kinetics of Viral Protein Expression1 , 2003, The Journal of Immunology.

[56]  Jorge Carneiro,et al.  Tolerance and immunity in a mathematical model of T-cell mediated suppression. , 2003, Journal of theoretical biology.

[57]  Philippa Marrack,et al.  T Cells Compete for Access to Antigen-Bearing Antigen-Presenting Cells , 2000, The Journal of experimental medicine.

[58]  Forest M. White,et al.  Immunodominance Among EBV-Derived Epitopes Restricted by HLA-B27 Does Not Correlate with Epitope Abundance in EBV-Transformed B-Lymphoblastoid Cell Lines1 , 2000, The Journal of Immunology.

[59]  Philip J. R. Goulder,et al.  Consistent Patterns in the Development and Immunodominance of Human Immunodeficiency Virus Type 1 (HIV-1)-Specific CD8+ T-Cell Responses following Acute HIV-1 Infection , 2002, Journal of Virology.

[60]  A S Perelson,et al.  T cell repertoires and competitive exclusion. , 1994, Journal of theoretical biology.

[61]  Mark M Davis,et al.  Linking molecular and cellular events in T-cell activation and synapse formation. , 2003, Seminars in immunology.

[62]  Eun Young Choi,et al.  Immunodominance of H60 is caused by an abnormally high precursor T cell pool directed against its unique minor histocompatibility antigen peptide. , 2002, Immunity.

[63]  Carl T. Bergstrom,et al.  Models of CD8+ responses: 1. What is the antigen-independent proliferation program. , 2003, Journal of theoretical biology.

[64]  E. Pamer,et al.  CD8 T cell responses to infectious pathogens. , 2003, Annual review of immunology.

[65]  Charles R. M. Bangham,et al.  Human immunodeficiency virus genetic variation that can escape cytotoxic T cell recognition , 1991, Nature.

[66]  Mark M Davis,et al.  T cell killing does not require the formation of a stable mature immunological synapse , 2004, Nature Immunology.

[67]  V. Engelhard,et al.  Insights into antigen processing gained by direct analysis of the naturally processed class I MHC associated peptide repertoire. , 2002, Molecular immunology.

[68]  Sebastian Bonhoeffer,et al.  Epitope down-modulation as a mechanism for the coexistence of competing T-cells. , 2005, Journal of theoretical biology.

[69]  M. van den Broek,et al.  Cutting Edge: Competition for APC by CTLs of Different Specificities Is Not Functionally Important During Induction of Antiviral Responses1 , 2002, The Journal of Immunology.

[70]  S. Nathenson,et al.  Isolation of an endogenously processed immunodominant viral peptide from the class I H–2Kb molecule , 1990, Nature.

[71]  Emmanuel Beaudoing,et al.  Size Estimate of the αβ TCR Repertoire of Naive Mouse Splenocytes1 , 2000, The Journal of Immunology.

[72]  Galit Alter,et al.  High degree of inter-clade cross-reactivity of HIV-1-specific T cell responses at the single peptide level , 2005, AIDS.

[73]  R. Henderson,et al.  Characteristics of endogenous peptides eluted from the class I MHC molecule HLA-B7 determined by mass spectrometry and computer modeling. , 1993, Journal of immunology.

[74]  R. Germain,et al.  Dynamic Imaging of T Cell-Dendritic Cell Interactions in Lymph Nodes , 2002, Science.

[75]  P. MacAry,et al.  Cross‐presentation: dendritic cells and macrophages bite off more than they can chew! , 2004, Immunology.

[76]  Peter Friedl,et al.  A spectrum of biophysical interaction modes between T cells and different antigen-presenting cells during priming in 3-D collagen and in vivo. , 2004, Blood.

[77]  Mark J. Miller,et al.  T cell repertoire scanning is promoted by dynamic dendritic cell behavior and random T cell motility in the lymph node. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[78]  Todd M. Allen,et al.  HIV evolution: CTL escape mutation and reversion after transmission , 2004, Nature Medicine.