Computer-Aided Drug Design of β-Secretase, γ-Secretase and Anti-Tau Inhibitors for the Discovery of Novel Alzheimer’s Therapeutics

Aging-associated neurodegenerative diseases, which are characterized by progressive neuronal death and synapses loss in human brain, are rapidly growing affecting millions of people globally. Alzheimer’s is the most common neurodegenerative disease and it can be caused by genetic and environmental risk factors. This review describes the amyloid-β and Tau hypotheses leading to amyloid plaques and neurofibrillary tangles, respectively which are the predominant pathways for the development of anti-Alzheimer’s small molecule inhibitors. The function and structure of the druggable targets of these two pathways including β-secretase, γ-secretase, and Tau are discussed in this review article. Computer-Aided Drug Design including computational structure-based design and ligand-based design have been employed successfully to develop inhibitors for biomolecular targets involved in Alzheimer’s. The application of computational molecular modeling for the discovery of small molecule inhibitors and modulators for β-secretase and γ-secretase is summarized. Examples of computational approaches employed for the development of anti-amyloid aggregation and anti-Tau phosphorylation, proteolysis and aggregation inhibitors are also reported.

[1]  M. Kirschner,et al.  A protein factor essential for microtubule assembly. , 1975, Proceedings of the National Academy of Sciences of the United States of America.

[2]  M. Kirschner,et al.  Physical and chemical properties of purified tau factor and the role of tau in microtubule assembly. , 1977, Journal of molecular biology.

[3]  M. Kirschner,et al.  Purification of tau, a microtubule-associated protein that induces assembly of microtubules from purified tubulin. , 1977, Journal of molecular biology.

[4]  B. Zeeberg,et al.  Inhibition of microtubule assembly by phosphorylation of microtubule-associated proteins. , 1980, Biochemistry.

[5]  J. Walker,et al.  Cloning and sequencing of the cDNA encoding a core protein of the paired helical filament of Alzheimer disease: identification as the microtubule-associated protein tau. , 1988, Proceedings of the National Academy of Sciences of the United States of America.

[6]  R. A. Crowther,et al.  Multiple isoforms of human microtubule-associated protein tau: sequences and localization in neurofibrillary tangles of Alzheimer's disease , 1989, Neuron.

[7]  M. Kirschner,et al.  Phosphorylation of microtubule‐associated protein tau: identification of the site for Ca2(+)‐calmodulin dependent kinase and relationship with tau phosphorylation in Alzheimer tangles. , 1990, The EMBO journal.

[8]  K. Titani,et al.  Hyperphosphorylation of Tau in PHF , 1995, Neurobiology of Aging.

[9]  Y. Ihara,et al.  τ Is Widely Expressed in Rat Tissues , 1996 .

[10]  D. Borchelt,et al.  Endoproteolysis of Presenilin 1 and Accumulation of Processed Derivatives In Vivo , 1996, Neuron.

[11]  G. Hart,et al.  The Microtubule-associated Protein Tau Is Extensively Modified with O-linked N-acetylglucosamine* , 1996, The Journal of Biological Chemistry.

[12]  Y. Ihara,et al.  Tau is widely expressed in rat tissues. , 1996, Journal of Neurochemistry.

[13]  Exosites determine macromolecular substrate recognition by prothrombinase. , 1997 .

[14]  R. Barbour,et al.  Purification and cloning of amyloid precursor protein β-secretase from human brain , 1999, Nature.

[15]  D. Selkoe,et al.  Two transmembrane aspartates in presenilin-1 required for presenilin endoproteolysis and γ-secretase activity , 1999, Nature.

[16]  J. Treanor,et al.  Beta-secretase cleavage of Alzheimer's amyloid precursor protein by the transmembrane aspartic protease BACE. , 1999, Science.

[17]  Rudolph E. Tanzi,et al.  BACE Maps to Chromosome 11 and a BACE Homolog, BACE2, Reside in the Obligate Down Syndrome Region of Chromosome 21 , 1999 .

[18]  David G. Tew,et al.  Identification of a Novel Aspartic Protease (Asp 2) as β-Secretase , 1999, Molecular and Cellular Neuroscience.

[19]  L Hong,et al.  Structure of the protease domain of memapsin 2 (beta-secretase) complexed with inhibitor. , 2000, Science.

[20]  Patrick R. Hof,et al.  Tau protein isoforms, phosphorylation and role in neurodegenerative disorders 1 1 These authors contributed equally to this work. , 2000, Brain Research Reviews.

[21]  Dongwoo Shin,et al.  Design of Potent Inhibitors for Human Brain Memapsin 2 (β-Secretase). , 2000, Journal of the American Chemical Society.

[22]  E. Mandelkow,et al.  Assembly of tau protein into Alzheimer paired helical filaments depends on a local sequence motif ((306)VQIVYK(311)) forming beta structure. , 2000, Proceedings of the National Academy of Sciences of the United States of America.

[23]  I. Grundke‐Iqbal,et al.  Analysis of N‐glycans of pathological tau: possible occurrence of aberrant processing of tau in Alzheimer's disease , 2001, FEBS letters.

[24]  Lin Hong,et al.  Subsite Specificity of Memapsin 2 (β-Secretase): Implications for Inhibitor Design† , 2001 .

[25]  Lin Hong,et al.  Crystal Structure of Memapsin 2 (β-Secretase) in Complex with an Inhibitor OM00-3† , 2002 .

[26]  T. Iwatsubo,et al.  The role of presenilin cofactors in the γ-secretase complex , 2003, Nature.

[27]  Michael S. Wolfe,et al.  γ-Secretase is a membrane protein complex comprised of presenilin, nicastrin, aph-1, and pen-2 , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[28]  Hwangseo Park,et al.  Determination of the active site protonation state of beta-secretase from molecular dynamics simulation and docking experiment: implications for structure-based inhibitor design. , 2003, Journal of the American Chemical Society.

[29]  B. Hyman,et al.  Designed helical peptides inhibit an intramembrane protease. , 2003, Journal of the American Chemical Society.

[30]  V. Andrisano,et al.  beta-Amyloid aggregation induced by human acetylcholinesterase: inhibition studies. , 2003, Biochemical pharmacology.

[31]  B. Strooper,et al.  Aph-1, Pen-2, and Nicastrin with Presenilin Generate an Active γ-Secretase Complex , 2003, Neuron.

[32]  Jay S. Fine,et al.  Chronic Treatment with the γ-Secretase Inhibitor LY-411,575 Inhibits β-Amyloid Peptide Production and Alters Lymphopoiesis and Intestinal Cell Differentiation* , 2004, Journal of Biological Chemistry.

[33]  G. Higgins,et al.  Chronic treatment with the gamma-secretase inhibitor LY-411,575 inhibits beta-amyloid peptide production and alters lymphopoiesis and intestinal cell differentiation. , 2004, The Journal of biological chemistry.

[34]  T. Iwatsubo The γ-secretase complex: machinery for intramembrane proteolysis , 2004, Current Opinion in Neurobiology.

[35]  Sahil Patel,et al.  Apo and Inhibitor Complex Structures of BACE (β-secretase) , 2004 .

[36]  Fei Liu,et al.  Contributions of protein phosphatases PP1, PP2A, PP2B and PP5 to the regulation of tau phosphorylation , 2005, The European journal of neuroscience.

[37]  Robert A Copeland,et al.  An inhibitor binding pocket distinct from the catalytic active site on human beta-APP cleaving enzyme. , 2005, Biochemistry.

[38]  T. Südhof,et al.  Nicastrin Functions as a γ-Secretase-Substrate Receptor , 2005, Cell.

[39]  Tímea Polgár,et al.  Virtual screening for beta-secretase (BACE1) inhibitors reveals the importance of protonation states at Asp32 and Asp228. , 2005, Journal of medicinal chemistry.

[40]  H. Qing,et al.  Distinct transcriptional regulation and function of the human BACE2 and BACE1 genes , 2005, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

[41]  Lin Hong,et al.  Design, Synthesis and X-ray Structure of Protein−Ligand Complexes: Important Insight into Selectivity of Memapsin 2 (β-Secretase) Inhibitors , 2006 .

[42]  Computer-Aided Drug Design Applied to Beta and Gamma Secretase Inhibitors-Perspectives for New Alzheimer Disease Therapy , 2006 .

[43]  Jian Sun,et al.  Aminoethylenes: a tetrahedral intermediate isostere yielding potent inhibitors of the aspartyl protease BACE-1. , 2006, Journal of medicinal chemistry.

[44]  B. de Strooper,et al.  Active γ-Secretase Complexes Contain Only One of Each Component* , 2007, Journal of Biological Chemistry.

[45]  Pravin Kumar Gadakar,et al.  Pose Prediction Accuracy in Docking Studies and Enrichment of Actives in the Active Site of GSK-3β , 2007, J. Chem. Inf. Model..

[46]  György M. Keserü,et al.  Impact of Ligand Protonation on Virtual Screening against β-Secretase (BACE1) , 2007, J. Chem. Inf. Model..

[47]  Dhilon S. Patel,et al.  3D-QSAR and molecular docking studies on pyrazolopyrimidine derivatives as glycogen synthase kinase-3beta inhibitors. , 2007, Journal of molecular graphics & modelling.

[48]  B. Winblad,et al.  Rat Brain γ-Secretase Activity Is Highly Influenced by Detergents† , 2007 .

[49]  Csaba Magyar,et al.  Impact of ligand protonation on virtual screening against beta-secretase (BACE1). , 2007, Journal of chemical information and modeling.

[50]  F. García-Sierra,et al.  Truncation of tau protein and its pathological significance in Alzheimer's disease. , 2008, Journal of Alzheimer's disease : JAD.

[51]  L. Buée,et al.  Two-Dimensional Electrophoresis of Tau Mutants Reveals Specific Phosphorylation Pattern Likely Linked to Early Tau Conformational Changes , 2009, PloS one.

[52]  Carolyn A. Coughlan,et al.  Effects of donepezil on amyloid-β and synapse density in the Tg2576 mouse model of Alzheimer's disease , 2009, Brain Research.

[53]  Paolo Zamboni,et al.  Oxidative Stress and Neurodegenerative Diseases: A Review of Upstream and Downstream Antioxidant Therapeutic Options , 2009, Current neuropharmacology.

[54]  Nanda Ghoshal,et al.  Hybrid Structure-Based Virtual Screening Protocol for the Identification of Novel BACE1 Inhibitors , 2009, J. Chem. Inf. Model..

[55]  B. Winblad,et al.  Synaptic and Endosomal Localization of Active γ-Secretase in Rat Brain , 2010, PloS one.

[56]  Todd E. Golde,et al.  Targeting Aβ and tau in Alzheimer's disease, an early interim report , 2010, Experimental Neurology.

[57]  Rajiv Chopra,et al.  Design and synthesis of 5,5'-disubstituted aminohydantoins as potent and selective human beta-secretase (BACE1) inhibitors. , 2010, Journal of medicinal chemistry.

[58]  G. Salvesen,et al.  Emerging principles in protease-based drug discovery , 2010, Nature Reviews Drug Discovery.

[59]  C. Duyckaerts Tau pathology in children and young adults: can you still be unconditionally baptist? , 2011, Acta Neuropathologica.

[60]  R. Enriz,et al.  Structural and thermodynamic characteristics of the exosite binding pocket on the human BACE1: a molecular modeling approach. , 2010, The journal of physical chemistry. A.

[61]  Yuan Cheng,et al.  From fragment screening to in vivo efficacy: optimization of a series of 2-aminoquinolines as potent inhibitors of beta-site amyloid precursor protein cleaving enzyme 1 (BACE1). , 2011, Journal of medicinal chemistry.

[62]  M. Wolfe Inhibition and modulation of γ-secretase for Alzheimer’s disease , 2008, Neurotherapeutics.

[63]  Review of synthesis, biological assay and QSAR studies of β-secretase inhibitors. , 2011, Current computer-aided drug design.

[64]  George Kollias,et al.  Ligand-based virtual screening procedure for the prediction and the identification of novel β-amyloid aggregation inhibitors using Kohonen maps and Counterpropagation Artificial Neural Networks. , 2011, European journal of medicinal chemistry.

[65]  Zhi Li,et al.  Self-organizing molecular field analysis on human β-secretase nonpeptide inhibitors: 5, 5-disubstituted aminohydantoins. , 2011, European journal of medicinal chemistry.

[66]  K. Scearce-Levie,et al.  A Therapeutic Antibody Targeting BACE1 Inhibits Amyloid-β Production in Vivo , 2011, Science Translational Medicine.

[67]  J. Trojanowski,et al.  The acetylation of tau inhibits its function and promotes pathological tau aggregation. , 2011, Nature communications.

[68]  Anthony F. Nastase,et al.  Simple Structure-Based Approach for Predicting the Activity of Inhibitors of Beta-Secretase (BACE1) Associated with Alzheimer's Disease , 2012, J. Chem. Inf. Model..

[69]  William Greenlee,et al.  Design and validation of bicyclic iminopyrimidinones as beta amyloid cleaving enzyme-1 (BACE1) inhibitors: conformational constraint to favor a bioactive conformation. , 2012, Journal of medicinal chemistry.

[70]  Suresh Babu,et al.  Discovery of an Orally Available, Brain Penetrant BACE1 Inhibitor that Affords Robust CNS Aβ Reduction. , 2012, ACS medicinal chemistry letters.

[71]  Stefan F. Lichtenthaler,et al.  The Membrane-Bound Aspartyl Protease BACE1: Molecular and Functional Properties in Alzheimer’s Disease and Beyond , 2012, Front. Physio..

[72]  Jean-Michel Rondeau,et al.  Discovery of cyclic sulfone hydroxyethylamines as potent and selective β-site APP-cleaving enzyme 1 (BACE1) inhibitors: structure-based design and in vivo reduction of amyloid β-peptides. , 2012, Journal of medicinal chemistry.

[73]  S. Shuto,et al.  Conformational restriction approach to β-secretase (BACE1) inhibitors: effect of a cyclopropane ring to induce an alternative binding mode. , 2012, Journal of medicinal chemistry.

[74]  M. Goedert,et al.  Phosphorylation of microtubule‐associated protein tau by AMPK‐related kinases , 2012, Journal of neurochemistry.

[75]  Jianhua He,et al.  Flexibility of the flap in the active site of BACE1 as revealed by crystal structures and molecular dynamics simulations. , 2012, Acta crystallographica. Section D, Biological crystallography.

[76]  V. Pande,et al.  Design of β-amyloid aggregation inhibitors from a predicted structural motif. , 2012, Journal of medicinal chemistry.

[77]  Y. Kiso,et al.  BACE1 Inhibitor Peptides: Can an Infinitely Small k cat Value Turn the Substrate of an Enzyme into Its Inhibitor? , 2012, ACS medicinal chemistry letters.

[78]  E. Mandelkow,et al.  Biochemistry and cell biology of tau protein in neurofibrillary degeneration. , 2012, Cold Spring Harbor perspectives in medicine.

[79]  Dieter Langosch,et al.  The backbone dynamics of the amyloid precursor protein transmembrane helix provides a rationale for the sequential cleavage mechanism of γ-secretase. , 2013, Journal of the American Chemical Society.

[80]  E. Siemers,et al.  A phase 3 trial of semagacestat for treatment of Alzheimer's disease. , 2013, The New England journal of medicine.

[81]  L. Ji,et al.  Molecular hairpin: a possible model for inhibition of tau aggregation by tannic acid. , 2013, Biochemistry.

[82]  E. Huang,et al.  Argyrophilic grain disease differs from other tauopathies by lacking tau acetylation , 2013, Acta Neuropathologica.

[83]  T. Mohamed,et al.  Tau-derived-hexapeptide 306VQIVYK311 aggregation inhibitors: nitrocatechol moiety as a pharmacophore in drug design. , 2013, ACS chemical neuroscience.

[84]  The Alzheimer’s β-secretase BACE1 localizes to normal presynaptic terminals and to dystrophic presynaptic terminals surrounding amyloid plaques , 2013, Acta Neuropathologica.

[85]  In Silico Binding Mode Proposed for Flavonoid Ligands of Tau Protein with Interest in Alzheimer's Disease , 2013 .

[86]  Michele Vendruscolo,et al.  Identification of small-molecule binding pockets in the soluble monomeric form of the Aβ42 peptide. , 2013, The Journal of chemical physics.

[87]  Nigel M Hooper,et al.  Discovery of biphenylacetamide-derived inhibitors of BACE1 using de novo structure-based molecular design. , 2013, Journal of medicinal chemistry.

[88]  T. Golde,et al.  γ-Secretase inhibitors and modulators. , 2013, Biochimica et biophysica acta.

[89]  M. Gur,et al.  Computational Design of New Peptide Inhibitors for Amyloid Beta (Aβ) Aggregation in Alzheimer's Disease: Application of a Novel Methodology , 2013, PloS one.

[90]  Weiru Wang,et al.  Allosteric inhibition of BACE1 by an exosite-binding antibody. , 2013, Current opinion in structural biology.

[91]  Lucas Gutierrez,et al.  Structural and functional insights into the anti-BACE1 Fab fragment that recognizes the BACE1 exosite , 2014, Journal of biomolecular structure & dynamics.

[92]  Casey Cook,et al.  Acetylation of the KXGS motifs in tau is a critical determinant in modulation of tau aggregation and clearance , 2013, Human molecular genetics.

[93]  Ruth Nussinov,et al.  Structural Insight into Tau Protein’s Paradox of Intrinsically Disordered Behavior, Self-Acetylation Activity, and Aggregation , 2014, The journal of physical chemistry letters.

[94]  Bengt Winblad,et al.  The role of protein glycosylation in Alzheimer disease , 2014, The FEBS journal.

[95]  S. Basu,et al.  Encompassing receptor flexibility in virtual screening using ensemble docking-based hybrid QSAR: discovery of novel phytochemicals for BACE1 inhibition. , 2014, Molecular bioSystems.

[96]  C. Taft,et al.  Pharmacophore-based Drug Design of Novel Potential Tau Ligands for Alzheimer's Disease Treatment , 2014 .

[97]  D. Vocadlo,et al.  The Emerging Link between O-GlcNAc and Alzheimer Disease* , 2014, The Journal of Biological Chemistry.

[98]  Kris Simone Tranches Dias,et al.  Multi-Target Directed Drugs: A Modern Approach for Design of New Drugs for the treatment of Alzheimer’s Disease , 2014, Current neuropharmacology.

[99]  In silico screening of drugs to find potential gamma-secretase inhibitors using pharmacophore modeling, QSAR and molecular docking studies. , 2014, Combinatorial chemistry & high throughput screening.

[100]  Huaxi Xu,et al.  The γ-secretase complex: from structure to function , 2014, Front. Cell. Neurosci..

[101]  Arun K. Ghosh,et al.  BACE1 (β-secretase) inhibitors for the treatment of Alzheimer's disease. , 2014, Chemical Society reviews.

[102]  Frederik Barkhof,et al.  Long-term effects of amyloid, hypometabolism, and atrophy on neuropsychological functions , 2014, Neurology.

[103]  R. Hartmann,et al.  First selective dual inhibitors of tau phosphorylation and Beta-amyloid aggregation, two major pathogenic mechanisms in Alzheimer's disease. , 2014, ACS chemical neuroscience.

[104]  Mariusz Jaremko,et al.  Folding of the Tau Protein on Microtubules. , 2015, Angewandte Chemie.

[105]  Xiao Mei Zheng,et al.  An Orally Available BACE1 Inhibitor That Affords Robust CNS Aβ Reduction without Cardiovascular Liabilities. , 2015, ACS medicinal chemistry letters.

[106]  Modulation of Aβ42 in vivo by γ-secretase modulator in primates and humans , 2015, Alzheimer's Research & Therapy.

[107]  M. Solas,et al.  Treatment Options in Alzheimer´s Disease: The GABA Story. , 2015, Current pharmaceutical design.

[108]  Guanghui Yang,et al.  Sampling the conformational space of the catalytic subunit of human γ-secretase , 2015, bioRxiv.

[109]  Dirk Calcoen,et al.  What does it take to produce a breakthrough drug? , 2015, Nature Reviews Drug Discovery.

[110]  Hsuan-Liang Liu,et al.  Computer-aided discovery of novel non-peptide inhibitors against amyloid-beta (Aβ) peptide aggregation for treating Alzheimer's disease , 2015 .

[111]  Sjors H. W. Scheres,et al.  An atomic structure of human γ-secretase , 2015, Nature.

[112]  M. Heneka,et al.  Microglia in Alzheimer's disease: the good, the bad and the ugly. , 2016, Current Alzheimer research.

[113]  Ashok Sharma,et al.  Molecular docking based virtual screening of natural compounds as potential BACE1 inhibitors: 3D QSAR pharmacophore mapping and molecular dynamics analysis , 2016, Journal of biomolecular structure & dynamics.

[114]  Andrea Mcclure,et al.  Targeting the BACE1 Active Site Flap Leads to a Potent Inhibitor That Elicits Robust Brain Aβ Reduction in Rodents. , 2016, ACS medicinal chemistry letters.

[115]  P. Hof,et al.  Tau Protein Hyperphosphorylation and Aggregation in Alzheimer’s Disease and Other Tauopathies, and Possible Neuroprotective Strategies , 2016, Biomolecules.

[116]  S. Chakraborty,et al.  Multi-target screening mines hesperidin as a multi-potent inhibitor: Implication in Alzheimer's disease therapeutics. , 2016, European journal of medicinal chemistry.

[117]  M. Albert,et al.  Why has therapy development for dementia failed in the last two decades? , 2016, Alzheimer's & Dementia.

[118]  Xia Zhang,et al.  Role of oxidative stress in Alzheimer's disease , 2016, Biomedical reports.

[119]  D. Hill,et al.  Bapineuzumab for mild to moderate Alzheimer’s disease in two global, randomized, phase 3 trials , 2016, Alzheimer's Research & Therapy.

[120]  H. Sugimoto,et al.  Design and synthesis of curcumin derivatives as tau and amyloid β dual aggregation inhibitors. , 2016, Bioorganic & medicinal chemistry letters.

[121]  Laura Pérez-Benito,et al.  Application of Free Energy Perturbation for the Design of BACE1 Inhibitors , 2016, J. Chem. Inf. Model..

[122]  L. Gan,et al.  Molecular Pathways in Alzheimer’s Disease and Cognitive Function: New Insights into Pathobiology of Tau , 2016 .

[123]  P. Williams,et al.  C-Glycosylflavones Alleviate Tau Phosphorylation and Amyloid Neurotoxicity through GSK3β Inhibition. , 2016, ACS chemical neuroscience.

[124]  D. Bouvier,et al.  High Resolution Dissection of Reactive Glial Nets in Alzheimer’s Disease , 2016, Scientific Reports.

[125]  M. Rosales-Hernández,et al.  Asp32 and Asp228 determine the selective inhibition of BACE1 as shown by docking and molecular dynamics simulations. , 2016, European journal of medicinal chemistry.

[126]  J. Cummings,et al.  Alzheimer's drug-development pipeline: 2016 , 2016, Alzheimer's & dementia.

[127]  Dev Mehta,et al.  Why do trials for Alzheimer’s disease drugs keep failing? A discontinued drug perspective for 2010-2015 , 2017, Expert opinion on investigational drugs.

[128]  B. Penke,et al.  New small-size peptides modulators of the exosite of BACE1 obtained from a structure-based design , 2017, Journal of biomolecular structure & dynamics.

[129]  E. Mandelkow,et al.  Multivalent cross-linking of actin filaments and microtubules through the microtubule-associated protein Tau , 2017, Nature Communications.

[130]  W. Guba,et al.  Potent and Selective BACE-1 Peptide Inhibitors Lower Brain Aβ Levels Mediated by Brain Shuttle Transport , 2017, EBioMedicine.

[131]  David Eisenberg,et al.  Atomic resolution structures from fragmented protein crystals by the cryoEM method MicroED , 2017, Nature Methods.

[132]  C. Masters,et al.  A systemic view of Alzheimer disease — insights from amyloid-β metabolism beyond the brain , 2017, Nature Reviews Neurology.

[133]  O. Firuzi,et al.  Discovery of imidazopyridines containing isoindoline-1,3-dione framework as a new class of BACE1 inhibitors: Design, synthesis and SAR analysis. , 2017, European journal of medicinal chemistry.

[134]  D. Eisenberg,et al.  Structure-based inhibitors of tau aggregation , 2017, Nature Chemistry.

[135]  V. Kepe,et al.  Design, Syntheses, and in Vitro Evaluation of New Fluorine-18 Radiolabeled Tau-Labeling Molecular Probes. , 2017, Journal of medicinal chemistry.

[136]  Christoforos Hadjichrysanthou,et al.  Why do so many clinical trials of therapies for Alzheimer's disease fail? , 2017, The Lancet.

[137]  O. Firuzi,et al.  Multifunctional iminochromene-2H-carboxamide derivatives containing different aminomethylene triazole with BACE1 inhibitory, neuroprotective and metal chelating properties targeting Alzheimer's disease. , 2017, European journal of medicinal chemistry.

[138]  Ji Young Lee,et al.  Allosteric Modulation of Intact γ-Secretase Structural Dynamics. , 2017, Biophysical journal.

[139]  C. Ávila,et al.  Computer-Aided Drug Design Applied to Marine Drug Discovery: Meridianins as Alzheimer’s Disease Therapeutic Agents , 2017, Marine drugs.

[140]  C. Masters,et al.  A systemic view of Alzheimer disease — insights from amyloid-β metabolism beyond the brain , 2017, Nature Reviews Neurology.

[141]  B. Cullen,et al.  Update on Alzheimer's Disease Therapy and Prevention Strategies. , 2017, Annual review of medicine.

[142]  Elizabeth Hatcher Frush,et al.  In Silico Prediction of Ligand Binding Energies in Multiple Therapeutic Targets and Diverse Ligand Sets-A Case Study on BACE1, TYK2, HSP90, and PERK Proteins. , 2017, The journal of physical chemistry. B.

[143]  K. P. Kepp,et al.  Membrane Dynamics of γ-Secretase Provides a Molecular Basis for β-Amyloid Binding and Processing. , 2017, ACS chemical neuroscience.

[144]  W. Han,et al.  Initial Substrate Binding of γ-Secretase: The Role of Substrate Flexibility. , 2017, ACS chemical neuroscience.

[145]  The Lancet Neurology Solanezumab: too late in mild Alzheimer's disease? , 2017, The Lancet Neurology.

[146]  K. Geoghegan,et al.  Mapping the Binding Site of BMS-708163 on γ-Secretase with Cleavable Photoprobes. , 2017, Cell chemical biology.

[147]  Yan Niu,et al.  2-Substituted-thio-N-(4-substituted-thiazol/1H-imidazol-2-yl)acetamides as BACE1 inhibitors: Synthesis, biological evaluation and docking studies. , 2017, European journal of medicinal chemistry.

[148]  Pedro Rosa-Neto,et al.  Synergistic interaction between amyloid and tau predicts the progression to dementia , 2017, Alzheimer's & Dementia.

[149]  A. Murzin,et al.  Cryo-EM structures of Tau filaments from Alzheimer’s disease brain , 2017, Nature.

[150]  N. Tang,et al.  Molecular Recipe for γ-Secretase Modulation from Computational Analysis of 60 Active Compounds , 2018, ACS Omega.

[151]  A. Alonso,et al.  Hyperphosphorylation of Tau Associates With Changes in Its Function Beyond Microtubule Stability , 2018, Front. Cell. Neurosci..

[152]  M. Medina An Overview on the Clinical Development of Tau-Based Therapeutics , 2018, International journal of molecular sciences.

[153]  Yigong Shi,et al.  Structural basis of Notch recognition by human gamma-secretase , 2018 .

[154]  A. Nath,et al.  The Rational Discovery of a Tau Aggregation Inhibitor. , 2018, Biochemistry.

[155]  S. Moradi,et al.  Effective suppression of the modified PHF6 peptide/1N4R Tau amyloid aggregation by intact curcumin, not its degradation products: Another evidence for the pigment as preventive/therapeutic "functional food". , 2018, International journal of biological macromolecules.

[156]  Brian A. Gordon,et al.  Tau Kinetics in Neurons and the Human Central Nervous System , 2018, Neuron.

[157]  E. Sigurdsson,et al.  Tau-targeting therapies for Alzheimer disease , 2018, Nature Reviews Neurology.

[158]  L. Domínguez,et al.  Simulating the γ-secretase enzyme: Recent advances and future directions. , 2018, Biochimie.

[159]  S. Agatonovic-Kustrin,et al.  A molecular approach in drug development for Alzheimer's disease. , 2018, Biomedicine & pharmacotherapy = Biomedecine & pharmacotherapie.

[160]  Yigong Shi,et al.  Structural basis of Notch recognition by human γ-secretase , 2018, Nature.

[161]  K. Kusakabe,et al.  Rational Design of Novel 1,3-Oxazine Based β-Secretase (BACE1) Inhibitors: Incorporation of a Double Bond To Reduce P-gp Efflux Leading to Robust Aβ Reduction in the Brain. , 2018, Journal of medicinal chemistry.

[162]  F. Kametani,et al.  Reconsideration of Amyloid Hypothesis and Tau Hypothesis in Alzheimer's Disease , 2018, Front. Neurosci..

[163]  A. Murzin,et al.  Tau filaments from multiple cases of sporadic and inherited Alzheimer’s disease adopt a common fold , 2018, bioRxiv.

[164]  V. Masand,et al.  Design of novel amyloid β aggregation inhibitors using QSAR, pharmacophore modeling, molecular docking and ADME prediction , 2018, In Silico Pharmacology.

[165]  H. Ågren,et al.  Different Positron Emission Tomography Tau Tracers Bind to Multiple Binding Sites on the Tau Fibril: Insight from Computational Modeling. , 2018, ACS chemical neuroscience.

[166]  R. Kiss,et al.  Structural Basis of Small Molecule Targetability of Monomeric Tau Protein. , 2018, ACS chemical neuroscience.

[168]  A. Rauk,et al.  d-Amino Acid Pseudopeptides as Potential Amyloid-Beta Aggregation Inhibitors , 2018, Molecules.

[169]  Luc Buée,et al.  The elusive tau molecular structures: can we translate the recent breakthroughs into new targets for intervention? , 2019, Acta Neuropathologica Communications.

[170]  M. Zacharias,et al.  Uncovering the Binding Mode of γ -Secretase Inhibitors. , 2019, ACS chemical neuroscience.

[171]  M. Wolfe Structure and Function of the γ-Secretase Complex. , 2019, Biochemistry.

[172]  J. Cummings,et al.  Alzheimer's disease drug development pipeline: 2019 , 2019, Alzheimer's & dementia.

[173]  Structure-Based Design of Selective beta-Site Amyloid Precursor Protein Cleaving Enzyme 1 (BACE1) Inhibitors: Targeting the Flap to Gain Selectivity over BACE2. , 2019 .

[174]  Keun Woo Lee,et al.  Structure-Based Drug Designing Recommends HDAC6 Inhibitors To Attenuate Microtubule-Associated Tau-Pathogenesis. , 2018, ACS chemical neuroscience.

[175]  Weiliang Zhu,et al.  Molecular Mechanism of Binding Selectivity of Inhibitors toward BACE1 and BACE2 Revealed by Multiple Short Molecular Dynamics Simulations and Free Energy Predictions. , 2019, ACS chemical neuroscience.

[176]  D. Moechars,et al.  Structure-Based Design of Selective β-Site Amyloid Precursor Protein Cleaving Enzyme 1 (BACE1) Inhibitors: Targeting the Flap to Gain Selectivity over BACE2. , 2019, Journal of medicinal chemistry.

[177]  P. Reddy,et al.  Structure Based Design and Molecular Docking Studies for Phosphorylated Tau Inhibitors in Alzheimer’s Disease , 2019, Cells.

[178]  Li Luo,et al.  Abnormal platelet amyloid‐β precursor protein metabolism in SAMP8 mice: Evidence for peripheral marker in Alzheimer's disease , 2019, Journal of cellular physiology.

[179]  Dan J Stein,et al.  Global, regional, and national burden of Alzheimer's disease and other dementias, 1990–2016: a systematic analysis for the Global Burden of Disease Study 2016 , 2019, The Lancet Neurology.

[180]  Alzheimer's Association∗ 2019 Alzheimer's disease facts and figures , 2019, Alzheimer's & Dementia.

[181]  Maria Vanina Martinez,et al.  QSAR Classification Models for Predicting the Activity of Inhibitors of Beta-Secretase (BACE1) Associated with Alzheimer’s Disease , 2019, Scientific Reports.

[182]  D. Eisenberg,et al.  Structure-Based Peptide Inhibitor Design of Amyloid-β Aggregation , 2019, Front. Mol. Neurosci..

[183]  Xiaoli An,et al.  Disclosing the Template-Induced Misfolding Mechanism of Tau Protein by Studying the Dissociation of the Boundary Chain from the Formed Tau Fibril Based on a Steered Molecular Dynamics Simulation. , 2019, ACS chemical neuroscience.

[184]  Indrani Bera Current Therapy and Computational Drug Designing Approaches for Neurodegenerative Diseases -with Focus on Alzheimer’s and Parkinson’s. , 2019, Current Signal Transduction Therapy.

[185]  Seokmin Shin,et al.  Computational Study on Structure and Aggregation Pathway of Aβ42 Amyloid Protofibril. , 2019, The journal of physical chemistry. B.

[186]  Sucharita Das,et al.  Hybrid approach to sieve out natural compounds against dual targets in Alzheimer’s Disease , 2019, Scientific Reports.

[187]  M. Zacharias,et al.  Structural Modeling of γ-Secretase Aβ n Complex Formation and Substrate Processing. , 2019, ACS chemical neuroscience.

[188]  Keun Woo Lee,et al.  Computational Simulations Identified Two Candidate Inhibitors of Cdk5/p25 to Abrogate Tau-associated Neurological Disorders , 2019, Computational and structural biotechnology journal.

[189]  Shuangyan Zhou,et al.  Disclosing the Mechanism of Spontaneous Aggregation and Template-Induced Misfolding of the Key Hexapeptide (PHF6) of Tau Protein Based on Molecular Dynamics Simulation. , 2019, ACS chemical neuroscience.

[190]  Yigong Shi,et al.  Recognition of the Amyloid Precursor Protein by Human gamma-secretase , 2019 .

[191]  Yigong Shi,et al.  Recognition of the amyloid precursor protein by human γ-secretase , 2019, Science.

[192]  L. Schneider A resurrection of aducanumab for Alzheimer's disease , 2020, The Lancet Neurology.

[193]  N. Kurita,et al.  Proposal of therapeutic curcumin derivatives for Alzheimer’s disease based on ab initio molecular simulations , 2020, Chemical Physics Letters.