Complete genome sequence of Streptobacillus moniliformis type strain (9901T)

Streptobacillus moniliformis Levaditi et al. 1925 is the type and sole species of the genus Streptobacillus, and is of phylogenetic interest because of its isolated location in the sparsely populated and neither taxonomically nor genomically much accessed family ‘Leptotrichiaceae’ within the phylum Fusobacteria. The ‘Leptotrichiaceae’ have not been well characterized, genomically or taxonomically. S. moniliformis, is a Gram-negative, non-motile, pleomorphic bacterium and is the etiologic agent of rat bite fever and Haverhill fever. Strain 9901T, the type strain of the species, was isolated from a patient with rat bite fever. Here we describe the features of this organism, together with the complete genome sequence and annotation. This is only the second completed genome sequence of the order Fusobacteriales and no more than the third sequence from the phylum Fusobacteria. The 1,662,578 bp long chromosome and the 10,702 bp plasmid with a total of 1511 protein-coding and 55 RNA genes are part of the GenomicEncyclopedia ofBacteria andArchaea project.

[1]  Natalia N. Ivanova,et al.  A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea , 2009, Nature.

[2]  Lynne A. Goodwin,et al.  Complete genome sequence of Leptotrichia buccalis type strain (C-1013-bT) , 2009, Standards in genomic sciences.

[3]  E. Freundt Experimental investigations into the pathogenicity of the L-phase variant of Streptobacillus moniliformis. , 2009, Acta pathologica et microbiologica Scandinavica.

[4]  I-Min A. Chen,et al.  IMG ER: a system for microbial genome annotation expert review and curation , 2009, Bioinform..

[5]  Lynne A. Goodwin,et al.  Complete genome sequence of Kytococcus sedentarius type strain (541T) , 2009, Standards in genomic sciences.

[6]  J. Rougemont,et al.  A rapid bootstrap algorithm for the RAxML Web servers. , 2008, Systematic biology.

[7]  Chris F. Taylor,et al.  The minimum information about a genome sequence (MIGS) specification , 2008, Nature Biotechnology.

[8]  A. Yamada,et al.  Detection of Streptobacillus spp. in feral rats by specific polymerase chain reaction , 2008, Microbiology and immunology.

[9]  Nikos Kyrpides,et al.  The Genomes On Line Database (GOLD) in 2007: status of genomic and metagenomic projects and their associated metadata , 2007, Nucleic Acids Res..

[10]  S. Elliott Rat Bite Fever and Streptobacillus moniliformis , 2007, Clinical Microbiology Reviews.

[11]  Christopher J. Lee,et al.  Multiple sequence alignment using partial order graphs , 2002, Bioinform..

[12]  M. Ashburner,et al.  Gene Ontology: tool for the unification of biology , 2000, Nature Genetics.

[13]  Wei Qian,et al.  Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. , 2000, Molecular biology and evolution.

[14]  M. Rupp Streptobacillus moniliformis endocarditis: case report and review. , 1992, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

[15]  O. Kandler,et al.  Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya. , 1990, Proceedings of the National Academy of Sciences of the United States of America.

[16]  R. Finch,et al.  Characterisation and antibiotic susceptibilities of Streptobacillus moniliformis. , 1986, Journal of medical microbiology.

[17]  D. Shanson,et al.  Comparison of media with and without 'Panmede' for the isolation of Streptobacillus moniliformis from blood cultures and observations on the inhibitory effect of sodium polyanethol sulphonate. , 1985, Journal of medical microbiology.

[18]  J. Faber,et al.  Modified biochemical tests for characterization of L-phase variants of bacteria. , 1968, Applied microbiology.

[19]  F. Parker,et al.  The Etiology of Haverhill Fever (Erythema Arthriticum Epidemicum). , 1926, The American journal of pathology.

[20]  S. Tasker,et al.  Bergey’s Manual of Systematic Bacteriology , 2010 .

[21]  Lynne A. Goodwin,et al.  Complete genome sequence of Kytococcus sedentarius type strain (541 T ) , 2009 .

[22]  Fatal rat-bite fever--Florida and Washington, 2003. , 2005, MMWR. Morbidity and mortality weekly report.

[23]  P. Sneath,et al.  Approved lists of bacterial names. , 1980, The Medical journal of Australia.

[24]  J. Faber,et al.  Standardized bacteriologic techniques for the characterization of Mycoplasma species1, 2 , 1970 .