GATC motifs may alter the conformation of DNA depending on sequence context and N6-adenine methylation status: possible implications for DNA-protein recognition

[1]  P. Polaczek Is the dnaA promoter region in Escherichia coli an evolutionary junkyard of physiologically insignificant regulatory elements? , 1998, Molecular microbiology.

[2]  P. Polaczek,et al.  Unwinding of the Escherichia coli origin of replication (oriC) can occur in the absence of initiation proteins but is stabilized by DnaA and histone-like proteins IHF or HU. , 1998, Plasmid.

[3]  D. Liberles,et al.  Role of architectural elements in combinatorial regulation of initiation of DNA replication in Escherichia coli , 1997, Molecular microbiology.

[4]  Phoebe A Rice,et al.  Crystal Structure of an IHF-DNA Complex: A Protein-Induced DNA U-Turn , 1996, Cell.

[5]  S Karlin,et al.  Similarities and dissimilarities of phage genomes. , 1996, Proceedings of the National Academy of Sciences of the United States of America.

[6]  R E Harrington,et al.  The effects of sequence context on DNA curvature. , 1996, Proceedings of the National Academy of Sciences of the United States of America.

[7]  A. Danchin,et al.  Uneven distribution of GATC motifs in the Escherichia coli chromosome, its plasmids and its phages. , 1996, Journal of molecular biology.

[8]  K. Skarstad,et al.  E. coli SeqA protein binds oriC in two different methyl-modulated reactions appropriate to its roles in DNA replication initiation and origin sequestration , 1995, Cell.

[9]  E. Crooke Regulation of chromosomal replication in E. coli: Sequestration and beyond , 1995, Cell.

[10]  F. K. Graaf,et al.  Negative control of fae (K88) expression by the‘global’regulator Lrp is modulated by the‘local’regulator FaeA and affected by DNA methylation , 1995, Molecular microbiology.

[11]  D M Crothers,et al.  Sequence elements responsible for DNA curvature. , 1994, Journal of molecular biology.

[12]  L. Malinina,et al.  Recombination-like structure of d(CCGCGG). , 1994, Journal of molecular biology.

[13]  W. Hillen,et al.  Oligo[d(C).(G)] runs exhibit a helical repeat of 11.1 bp in solution and cause slight DNA curvature when properly phased. , 1994, Nucleic acids research.

[14]  M. Bansal,et al.  CA/TG sequence at the 5' end of oligo(A)-tracts strongly modulates DNA curvature. , 1994, The Journal of biological chemistry.

[15]  E. Bonnefoy,et al.  HU, the major histone‐like protein of E. coli, modulates the binding of IHF to oriC. , 1992, The EMBO journal.

[16]  H. Yoshikawa,et al.  Structure and function of DnaA and the DnaA‐box in eubacteria: evolutionary relationships of bacterial replication origins , 1991, Molecular microbiology.

[17]  R. Harrington,et al.  Characterization of inherent curvature in DNA lacking polyadenine runs. , 1991, The Journal of biological chemistry.

[18]  R E Harrington,et al.  Curved DNA without A-A: experimental estimation of all 16 DNA wedge angles. , 1991, Proceedings of the National Academy of Sciences of the United States of America.

[19]  E. Bonnefoy,et al.  HU and IHF, two homologous histone‐like proteins of Escherichia coli, form different protein‐DNA complexes with short DNA fragments. , 1991, The EMBO journal.

[20]  M. Schaechter,et al.  Membrane attachment and DNA bending at the origin of the Escherichia coli chromosome. , 1991, Research in microbiology.

[21]  P. Polaczek,et al.  Regulation of expression of the dnaA gene in Escherichia coli: role of the two promoters and the DnaA box. , 1990, The New biologist.

[22]  P. Polaczek Bending of the origin of replication of E. coli by binding of IHF at a specific site. , 1990, The New biologist.

[23]  P. Modrich,et al.  Methyl-directed DNA mismatch correction. , 1989, The Journal of biological chemistry.

[24]  A. Kornberg,et al.  Duplex opening by dnaA protein at novel sequences in initiation of replication at the origin of the E. coli chromosome , 1988, Cell.

[25]  S. Diekmann DNA methylation can enhance or induce DNA curvature. , 1987, The EMBO journal.

[26]  H. Nash,et al.  Role of Escherichia coli IHF protein in lambda site-specific recombination. A mutational analysis of binding sites. , 1986, Journal of molecular biology.

[27]  Hen-Ming Wu,et al.  DNA bending at adenine · thymine tracts , 1986, Nature.

[28]  N. Kleckner,et al.  IS10 transposition is regulated by DNA adenine methylation , 1985, Cell.

[29]  R. Teoule,et al.  NMR studies on oligodeoxyribonucleotides containing the dam methylation site GATC. Comparison between d(GGATCC) and d(GGm6ATCC). , 1985, Biochemistry.

[30]  Douglas W. Smith,et al.  Chromosomal replication origin from the marine bacterium Vibrio harveyi functions in Escherichia coli: oriC consensus sequence. , 1983, Proceedings of the National Academy of Sciences of the United States of America.

[31]  P. V. von Hippel,et al.  Effects of methylation on the stability of nucleic acid conformations. Studies at the polymer level. , 1978, The Journal of biological chemistry.

[32]  P. V. von Hippel,et al.  Effects of methylation on the stability of nucleic acid conformations: studies at the monomer level. , 1974, Biochemistry.