Interacting Agents in a Network for in silico Modeling of Nature-Inspired Smart Systems

An interacting multi-agent system in a network can model the evolution of a Nature-Inspired Smart System (NISS) exhibiting the four salient properties: (i) Collective, coordinated and efficient (ii) Self-organization and emergence (iii) Power law scaling or scale invariance under emergence (iv) Adaptive, fault tolerant and resilient against damage. We explain how these basic properties can arise among agents through random enabling, inhibiting, preferential attachment and growth of a multiagent system. The quantitative understanding of a Smart system with an arbitrary interactive topology is extremely difficult. However, for specific applications and a pre-defined static interactive topology among the agents, the quantitative parameters can be obtained through simulation to build a specific NISS. Further developments of agent technology will be of great value to model, simulate and animate, many phenomena in Systems biology pattern formation, cellular dynamics, cell motility, growth and development biology, 1 *in silico = In or by means of a computer simulation; in silico is closely based on two older Latin phrases that are key terms in the jargon of every biologist and biochemist: in vivo and in vitro, both of which came into use at the end of the nineteenth century. The first translates as “in that which is alive”, and refers to some experiment carried out within a living organism, such as a drug test on an animal. The second means “in glass” and is used for experiments that take place in an artificial environment, such as a test tube or culture dish (WIKIPEDIA) V.K. Murthy and E.V. Krishnamurthy: Interacting Agents in a Network for in silico Modeling of www.springerlink.com © Springer-Verlag Berlin Heidelberg 2007 Melbourne, Victoria 3000, Australia. kris.murthy@rmit.edu.au Nature-Inspired Smart Systems, Studies in Computational Intelligence (SCI) 72, 177–231 (2007) and can provide for improved capability in complex systems modelling. Also agents will serve as useful tools to model, design and develop biomorphic robots and neuromorphic chips.

[1]  Ralph C. Smith Smart Material Systems , 2005 .

[2]  Andrew D McCulloch,et al.  Integrative biological modelling in silico. , 2002, Novartis Foundation symposium.

[3]  Thomas Duke,et al.  The logical repertoire of ligand-binding proteins , 2005, Physical biology.

[4]  John Horgan,et al.  From Complexity to Perplexity , 1995 .

[5]  John R. Koza,et al.  Genetic Programming II , 1992 .

[6]  Thomas F. Weiss,et al.  Cellular Biophysics, Volumes 1 and 2 , 1996 .

[7]  Jeng-Shyang Pan,et al.  Parallel Ant Colony Systems , 2003, ISMIS.

[8]  Matthias Klusch,et al.  Dynamic Coalition Formation among Rational Agents , 2002, IEEE Intell. Syst..

[9]  Zsolt Palotai,et al.  Emergence of scale-free properties in Hebbian networks , 2003, nlin/0308013.

[10]  John W. Keele,et al.  Software agents in molecular computational biology , 2005, Briefings Bioinform..

[11]  Robert C. Hilborn,et al.  Chaos and Nonlinear Dynamics , 2000 .

[12]  Stuart A. Kauffman,et al.  ORIGINS OF ORDER , 2019, Origins of Order.

[13]  Annie S. Wu,et al.  Emergence of genomic self-similarity in location independent representations , 2006, Genetic Programming and Evolvable Machines.

[14]  David Strauss On a general class of models for interaction , 1986 .

[15]  Martin J Blaser,et al.  An endangered species in the stomach. , 2005, Scientific American.

[16]  Peter J. Bentley,et al.  Biologically Inspired Evolutionary Development , 2003, ICES.

[17]  S. Torquato Random Heterogeneous Materials , 2002 .

[18]  D J Evans,et al.  Parallel processing , 1986 .

[19]  Marco Dorigo,et al.  Swarm intelligence: from natural to artificial systems , 1999 .

[20]  Radhika Nagpal,et al.  Construction by robot swarms using extended stigmergy , 2005 .

[21]  A. Vulpiani,et al.  Kolmogorov’s Legacy about Entropy, Chaos, and Complexity , 2003 .

[22]  Andrew J. Cowell,et al.  Evaluating Agent Architectures: Cougaar, Aglets and AAA , 2003, SELMAS.

[23]  Giovanna Di Marzo Serugendo,et al.  Engineering Emergent Behaviour: A Vision , 2003, MABS.

[24]  E. V. Krishnamurthy,et al.  Contextual information management using contract: based workflow , 2005, CF '05.

[25]  Paul Weirich Equilibrium and rationality , 1998 .

[26]  Ilya Prigogine,et al.  From Being To Becoming , 1980 .

[27]  Adam Szarowicz,et al.  The Application of AI to Automatically Generated Animation , 2001, Australian Joint Conference on Artificial Intelligence.

[28]  A. Turing The chemical basis of morphogenesis , 1952, Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences.

[29]  Adrian A. Hopgood,et al.  The state of artificial intelligence , 2005, Adv. Comput..

[30]  Dr. Zbigniew Michalewicz,et al.  How to Solve It: Modern Heuristics , 2004 .

[31]  George M. Zaslavsky,et al.  Chaotic Dynamics and the Origin of Statistical Laws , 1999 .

[32]  Shlomo Havlin,et al.  Complex networks are self-similar , 2005 .

[33]  Hiroshi Tanaka,et al.  Artificial Life Applications of a Class of P Systems: Abstract Rewriting Systems on Multisets , 2000, WMP.

[34]  David E. Goldberg,et al.  Genetic Algorithms in Search Optimization and Machine Learning , 1988 .

[35]  E. V. Krishnamurthy,et al.  Probabilistic parallel programming based on multiset transformation , 1995, Future Gener. Comput. Syst..

[36]  Guy Theraulaz,et al.  Self-Organization in Biological Systems , 2001, Princeton studies in complexity.

[37]  D R Westhead,et al.  Petri Net representations in systems biology. , 2003, Biochemical Society transactions.

[38]  Vikram Krishnamurthy,et al.  Multiset Rule-Based Programming Paradigm for Soft-Computing in Complex Systems , 2006, Handbook of Nature-Inspired and Innovative Computing.

[39]  S. N. Dorogovtsev,et al.  Evolution of networks , 2001, cond-mat/0106144.

[40]  P. Maini,et al.  Mathematical Models for Biological Pattern Formation , 2001 .

[41]  Steven H. Strogatz,et al.  Sync: The Emerging Science of Spontaneous Order , 2003 .

[42]  Bertrand Meyer,et al.  Applying 'design by contract' , 1992, Computer.

[43]  T. Stossel On the crawling of animal cells. , 1993, Science.

[44]  Bradley J Stith,et al.  Use of animation in teaching cell biology. , 2004, Cell biology education.

[45]  Markus R. Owen,et al.  Spatiotemporal Patterning in Models of Juxtacrine Intercellular Signalling with Feedback , 2001 .

[46]  Chengqi Zhang,et al.  Agent-Based Hybrid Intelligent Systems: An Agent-Based Framework for Complex Problem Solving , 2004 .

[47]  H. Arnstein The molecular biology of the cell : B. Alberts, D. Bray, J. Lewis, M. Raff, K. Roberts and J.D. Watson Garland Publishing; New York, London, 1983 xxxix + 1181 pages. $33.95 (hardback); $27.00, £14.95 (paperback, only in Europe) , 1986 .

[48]  V.K. Murthy,et al.  Distributed agent paradigm for soft and hard computation , 2006, J. Netw. Comput. Appl..

[49]  David Harel,et al.  Reactive animation: realistic modeling of complex dynamic systems , 2005, Computer.

[50]  Werner Ebeling,et al.  Self-Organization, Active Brownian Dynamics, and Biological Applications , 2002, cond-mat/0211606.

[51]  E. F. Codd,et al.  Cellular automata , 1968 .

[52]  David Harel,et al.  A Grand Challenge: Full Reactive Modeling of a Multi-cellular Animal , 2003, HSCC.

[53]  Jonathan Timmis,et al.  Artificial Immune Systems: A New Computational Intelligence Approach , 2003 .

[54]  A. Atilgan,et al.  Small-world communication of residues and significance for protein dynamics. , 2003, Biophysical journal.

[55]  Majid Ali Khan,et al.  Software Engineering Challenges for Mutable Agent Systems , 2003, SELMAS.

[56]  Jaime Simão Sichman,et al.  Multi-Agent-Based Simulation II , 2003, Lecture Notes in Computer Science.

[57]  E. Izhikevich,et al.  Weakly connected neural networks , 1997 .

[58]  Ralph C. Smith,et al.  Smart material systems - model development , 2005, Frontiers in applied mathematics.

[59]  E. V. Krishnamurthy,et al.  On the compactness of subsets of digital pictures , 1978 .

[60]  Paulo S. C. Alencar,et al.  Software Engineering for Multi-Agent Systems II , 2004 .

[61]  John C Wooley,et al.  Catalyzing Inquiry at the Interface of Computing and Biology , 2005 .

[62]  Michail Zak From instability to intelligence , 1997 .

[63]  Daniel Kunkle,et al.  Emergence of constraint in self-organizing systems. , 2004, Nonlinear dynamics, psychology, and life sciences.

[64]  Jürgen Branke,et al.  Multi-swarm Optimization in Dynamic Environments , 2004, EvoWorkshops.

[65]  Francis C. Moon,et al.  Chaotic and fractal dynamics , 1992 .

[66]  A. Pikovsky,et al.  Synchronization: Theory and Application , 2003 .

[67]  Gesine Reinert,et al.  Small worlds , 2001, Random Struct. Algorithms.

[68]  Julie A. Theriot,et al.  Principles of locomotion for simple-shaped cells , 1993, Nature.

[69]  George M. Whitesides,et al.  Millimeter-scale self-assembly and its applications , 2003 .

[70]  Susan Stepney,et al.  Artificial Immune Systems and the Grand Challenge for Non-classical Computation , 2003, ICARIS.

[71]  E. Shapiro,et al.  Cellular abstractions: Cells as computation , 2002, Nature.

[72]  Huaglory Tianfield A Study on the Multi-agent Approach to Large Complex Systems , 2003, KES.

[73]  Kevin M. Passino,et al.  Biomimicry of bacterial foraging for distributed optimization and control , 2002 .

[74]  Elhadi M. Shakshuki,et al.  Multi-agent development toolkits: an evaluation , 2004 .

[75]  Albert,et al.  Emergence of scaling in random networks , 1999, Science.

[76]  Shlomo Havlin,et al.  Fractals in Science , 1995 .

[77]  Marie-Pierre Gleizes,et al.  Self-Organisation and Emergence in MAS: An Overview , 2006, Informatica.

[78]  Yoseph Bar-Cohen,et al.  Biologically inspired intelligent robots , 2003, SPIE Smart Structures and Materials + Nondestructive Evaluation and Health Monitoring.

[79]  Nancy Forbes Imitation of Life , 2004 .