Molecular insights into photosynthesis and carbohydrate metabolism in Jatropha curcas grown under elevated CO2 using transcriptome sequencing and assembly
暂无分享,去创建一个
[1] A. R. Reddy,et al. Unravelling molecular mechanisms from floral initiation to lipid biosynthesis in a promising biofuel tree species, Pongamia pinnata using transcriptome analysis , 2016, Scientific Reports.
[2] B. Kimball. Crop responses to elevated CO2 and interactions with H2O, N, and temperature. , 2016, Current opinion in plant biology.
[3] G. Peltier,et al. NDH-1 and NDH-2 Plastoquinone Reductases in Oxygenic Photosynthesis. , 2016, Annual review of plant biology.
[4] Caixian Tang,et al. Physiological and Transcriptome Responses to Combinations of Elevated CO2 and Magnesium in Arabidopsis thaliana , 2016, PloS one.
[5] M. Oliveira,et al. Transcriptomics and physiological analyses reveal co-ordinated alteration of metabolic pathways in Jatropha curcas drought tolerance. , 2016, Journal of experimental botany.
[6] T. Shikanai,et al. Corrigendum: Photosystem I cyclic electron flow via chloroplast NADH dehydrogenase-like complex performs a physiological role for photosynthesis at low light , 2015, Scientific Reports.
[7] Shigeru Shigeoka,et al. Enhancement of photosynthetic capacity in Euglena gracilis by expression of cyanobacterial fructose-1,6-/sedoheptulose-1,7-bisphosphatase leads to increases in biomass and wax ester production , 2015, Biotechnology for Biofuels.
[8] Qing Yang,et al. Integrated genome sequence and linkage map of physic nut (Jatropha curcas L.), a biodiesel plant. , 2015, The Plant journal : for cell and molecular biology.
[9] S. Tangphatsornruang,et al. Elucidation of the molecular responses to waterlogging in Jatropha roots by transcriptome profiling , 2014, Front. Plant Sci..
[10] W. Huber,et al. Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2 , 2014, Genome Biology.
[11] Sumit Kumar,et al. Growth, reproductive phenology and yield responses of a potential biofuel plant, Jatropha curcas grown under projected 2050 levels of elevated CO2. , 2014, Physiologia plantarum.
[12] So young Lee,et al. Influence of salicylic acid on rubisco and rubisco activase in tobacco plant grown under sodium chloride in vitro. , 2014, Saudi journal of biological sciences.
[13] L. Voll,et al. Loss of the two major leaf isoforms of sucrose-phosphate synthase in Arabidopsis thaliana limits sucrose synthesis and nocturnal starch degradation but does not alter carbon partitioning during photosynthesis. , 2014, Journal of Experimental Botany.
[14] A. R. Reddy,et al. Persistent stimulation of photosynthesis in short rotation coppice mulberry under elevated CO2 atmosphere. , 2014, Journal of photochemistry and photobiology. B, Biology.
[15] Meiru Li,et al. Global Analysis of Gene Expression Profiles in Physic Nut (Jatropha curcas L.) Seedlings Exposed to Salt Stress , 2014, PloS one.
[16] R. David-Schwartz,et al. Substantial roles of hexokinase and fructokinase in the effects of sugars on plant physiology and development. , 2014, Journal of experimental botany.
[17] Haibo Wang,et al. Global Analysis of Transcriptome Responses and Gene Expression Profiles to Cold Stress of Jatropha curcas L. , 2013, PloS one.
[18] Ge Gao,et al. PlantTFDB 3.0: a portal for the functional and evolutionary study of plant transcription factors , 2013, Nucleic Acids Res..
[19] M. Laimer,et al. Jatropha curcas, a biofuel crop: Functional genomics for understanding metabolic pathways and genetic improvement , 2013, Biotechnology journal.
[20] F. Dédaldéchamp,et al. Source-to-sink transport of sugar and regulation by environmental factors , 2013, Front. Plant Sci..
[21] Wei Shi,et al. featureCounts: an efficient general purpose program for assigning sequence reads to genomic features , 2013, Bioinform..
[22] W. Shi,et al. The Subread aligner: fast, accurate and scalable read mapping by seed-and-vote , 2013, Nucleic acids research.
[23] Hairong Wei,et al. Global transcriptomic profiling of aspen trees under elevated [CO2] to identify potential molecular mechanisms responsible for enhanced radial growth , 2013, Journal of Plant Research.
[24] M. A. Katta,et al. De Novo Transcriptome Assembly (NGS) of Curcuma longa L. Rhizome Reveals Novel Transcripts Related to Anticancer and Antimalarial Terpenoids , 2013, PloS one.
[25] Zhengwei Zhu,et al. CD-HIT: accelerated for clustering the next-generation sequencing data , 2012, Bioinform..
[26] S. Zhang,et al. Global Analysis of Gene Expression Profiles in Developing Physic Nut (Jatropha curcas L.) Seeds , 2012, PloS one.
[27] Martin Vingron,et al. Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels , 2012, Bioinform..
[28] C. Foyer,et al. Photosynthetic control of electron transport and the regulation of gene expression. , 2012, Journal of experimental botany.
[29] U. Flügge,et al. The role of transporters in supplying energy to plant plastids. , 2011, Journal of experimental botany.
[30] M. Badger,et al. The Roles of ATP Synthase and the Cytochrome b6/f Complexes in Limiting Chloroplast Electron Transport and Determining Photosynthetic Capacity1[W][OA] , 2010, Plant Physiology.
[31] Y. Kohara,et al. Sequence Analysis of the Genome of an Oil-Bearing Tree, Jatropha curcas L. , 2010, DNA research : an international journal for rapid publication of reports on genes and genomes.
[32] S. Zeeman,et al. Regulation of starch metabolism: the age of enlightenment? , 2010, Current opinion in plant biology.
[33] F. Miglietta,et al. The transcriptome of Populus in elevated CO reveals increased anthocyanin biosynthesis during delayed autumnal senescence. , 2010, The New phytologist.
[34] Yuqing Xiong,et al. Deficiency in a cytosolic ribose-5-phosphate isomerase causes chloroplast dysfunction, late flowering and premature cell death in Arabidopsis. , 2009, Physiologia plantarum.
[35] Erika A. Sudderth,et al. Gene expression profiling: opening the black box of plant ecosystem responses to global change , 2009 .
[36] Cole Trapnell,et al. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome , 2009, Genome Biology.
[37] J. McGrath,et al. Genomic basis for stimulated respiration by plants growing under elevated carbon dioxide , 2009, Proceedings of the National Academy of Sciences.
[38] A. Ruban. Plants in light , 2009, Communicative & integrative biology.
[39] Ashwani Kumar,et al. An evaluation of multipurpose oil seed crop for industrial uses (Jatropha curcas L.): A review , 2008 .
[40] R. Patton,et al. Drugs, alcohol and sexual health: opportunities to influence risk behaviour , 2008, BMC Research Notes.
[41] E. Birney,et al. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. , 2008, Genome research.
[42] S. Heckathorn,et al. Effects of elevated CO2 on the tolerance of photosynthesis to acute heat stress in C3, C4, and CAM species. , 2008, American journal of botany.
[43] P. J. Andralojc,et al. Rubisco regulation: a role for inhibitors. , 2007, Journal of experimental botany.
[44] U. Sonnewald,et al. Characterisation of the ATP‐dependent phosphofructokinase gene family from Arabidopsis thaliana , 2007, FEBS letters.
[45] Akiyasu C. Yoshizawa,et al. KAAS: an automatic genome annotation and pathway reconstruction server , 2007, Environmental health perspectives.
[46] Matias D. Zurbriggen,et al. Transgenic Tobacco Plants Overexpressing Chloroplastic Ferredoxin-NADP(H) Reductase Display Normal Rates of Photosynthesis and Increased Tolerance to Oxidative Stress1 , 2006, Plant Physiology.
[47] C. Körner. Plant CO2 responses: an issue of definition, time and resource supply. , 2006, The New phytologist.
[48] S. Long,et al. Can fast-growing plantation trees escape biochemical down-regulation of photosynthesis when grown throughout their complete production cycle in the open air under elevated carbon dioxide? , 2006, Plant, cell & environment.
[49] Rishikesh Bhalerao,et al. Molecular targets of elevated [CO2] in leaves and stems of Populus deltoides: implications for future tree growth and carbon sequestration. , 2006, Functional plant biology : FPB.
[50] S. Long,et al. Photosynthesis and stomatal conductance responses of poplars to free-air CO2 enrichment (PopFACE) during the first growth cycle and immediately following coppice. , 2003, The New phytologist.
[51] N. Kruger,et al. The oxidative pentose phosphate pathway: structure and organisation. , 2003, Current opinion in plant biology.
[52] A. Sinskey,et al. Disparity between changes in mRNA abundance and enzyme activity in Corynebacterium glutamicum:implications for DNA microarray analysis , 2003, Applied Microbiology and Biotechnology.
[53] Thomas D. Schmittgen,et al. Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method. , 2001, Methods.
[54] M. Salvucci,et al. Rubisco activase constrains the photosynthetic potential of leaves at high temperature and CO2. , 2000, Proceedings of the National Academy of Sciences of the United States of America.
[55] L. Fuchigami,et al. Rubisco activation state decreases with increasing nitrogen content in apple leaves. , 2000, Journal of experimental botany.
[56] M. Press,et al. Elevated CO2 Induces Biochemical and Ultrastructural Changes in Leaves of the C4 Cereal Sorghum , 2000 .
[57] Carter,et al. Effects of elevated atmospheric CO(2) and temperature on leaf optical properties in Acer saccharum. , 2000, Environmental and experimental botany.
[58] A. Holaday,et al. Changes in Activities of Enzymes of Carbon Metabolism in Leaves during Exposure of Plants to Low Temperature. , 1992, Plant physiology.
[59] E. Myers,et al. Basic local alignment search tool. , 1990, Journal of molecular biology.
[60] Raymond Kendall. Ensemble Music for the Armed Forces , 1944 .
[61] Mukesh Jain,et al. RNA-Seq for transcriptome analysis in non-model plants. , 2013, Methods in molecular biology.
[62] S. Gupta,et al. Analysis of Jatropha curcas transcriptome for oil enhancement and genic markers , 2013, Physiology and Molecular Biology of Plants.
[63] O. Edenhofer,et al. Renewable Energy Sources and Climate Change Mitigation , 2011 .
[64] U. Schreiber,et al. Complementary PS II quantum yields calculated from simple fluorescence parameters measured by PAM fluorometry and the Saturation Pulse method , 2008 .
[65] Maria Jesus Martin,et al. The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003 , 2003, Nucleic Acids Res..
[66] Thomas D. Schmittgen,et al. Analysis of Relative Gene Expression Data Using Real-Time Quantitative PCR and the 2 2 DD C T Method , 2022 .