Comparing 2-nt 3' overhangs against blunt-ended siRNAs: a systems biology based study
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Chaoyang Zhang | Preetam Ghosh | Kalyan Basu | James E Fischer | Sajal K. Das | P. Ghosh | Chaoyang Zhang | K. Basu | R. Sarver | Ronald W Sarver | Robert Dullea | Tom G Turi | Sajal K Das | Bradley W Poland | J. E. Fischer | T. Turi | R. Dullea | B. Poland
[1] C. Lavigne,et al. Specific subcellular localization of siRNAs delivered by lipoplex in MCF-7 breast cancer cells. , 2007, Biochimie.
[2] Samik Ghosh,et al. A Computationally Fast and Parametric Model to Estimate Protein-Ligand Docking Time for Stochastic Event Based Simulation , 2007, Trans. Comp. Sys. Biology.
[3] M. Serra,et al. Comprehensive thermodynamic analysis of 3′ double-nucleotide overhangs neighboring Watson–Crick terminal base pairs , 2006, Nucleic acids research.
[4] D. Volfson,et al. Delay-induced stochastic oscillations in gene regulation. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[5] D. T. Lin,et al. The heat transfer analysis of nanoparticle heat source in alanine tissue by molecular dynamics. , 2005, International journal of biological macromolecules.
[6] Mark E. Davis,et al. Functional polarity is introduced by Dicer processing of short substrate RNAs , 2005, Nucleic acids research.
[7] Marian Groenenboom,et al. The RNA Silencing Pathway: The Bits and Pieces That Matter , 2005, PLoS Comput. Biol..
[8] Gregory J. Hannon,et al. MicroRNA-dependent localization of targeted mRNAs to mammalian P-bodies , 2005, Nature Cell Biology.
[9] H. Blau,et al. Argonaute 2/RISC resides in sites of mammalian mRNA decay known as cytoplasmic bodies , 2005, Nature Cell Biology.
[10] Sangdun Choi,et al. Synthetic dsRNA Dicer substrates enhance RNAi potency and efficacy , 2005, Nature Biotechnology.
[11] T. Tuschl,et al. Mechanisms of gene silencing by double-stranded RNA , 2004, Nature.
[12] A. Reynolds,et al. Rational siRNA design for RNA interference , 2004, Nature Biotechnology.
[13] Kazunari Taira,et al. Effects on RNAi of the tight structure, sequence and position of the targeted region. , 2004, Nucleic acids research.
[14] M. Mattson,et al. RNA Interference in Biology and Medicine , 2003, Pharmacological Reviews.
[15] Using DelPhi to Compute Electrostatic Potentials and Assess Their Contribution to Interactions , 2003, Current protocols in bioinformatics.
[16] K. Taira,et al. Comparison of the suppressive effects of antisense oligonucleotides and siRNAs directed against the same targets in mammalian cells. , 2003, Antisense & nucleic acid drug development.
[17] D. Bamford,et al. Cellular RNA-dependent RNA polymerase involved in posttranscriptional gene silencing has two distinct activity modes. , 2002, Molecular cell.
[18] Siddhartha Roy,et al. Stochastic Simulation of Gene Expression in a Single Cell , 2002, cond-mat/0210183.
[19] Michael T. McManus,et al. Gene silencing in mammals by small interfering RNAs , 2002, Nature Reviews Genetics.
[20] Titia Sijen,et al. On the Role of RNA Amplification in dsRNA-Triggered Gene Silencing , 2001, Cell.
[21] Q. Wei,et al. RNAi as Random Degradative PCR siRNA Primers Convert mRNA into dsRNAs that Are Degraded to Generate New siRNAs , 2001, Cell.
[22] A. Fire,et al. Specific inhibition of gene expression by small double-stranded RNAs in invertebrate and vertebrate systems , 2001, Proceedings of the National Academy of Sciences of the United States of America.
[23] T. Tuschl,et al. Duplexes of 21-nucleotide RNAs mediate RNA interference in cultured mammalian cells , 2001, Nature.
[24] T. Tuschl,et al. RNA interference is mediated by 21- and 22-nucleotide RNAs. , 2001, Genes & development.
[25] P. Sharp,et al. RNAi Double-Stranded RNA Directs the ATP-Dependent Cleavage of mRNA at 21 to 23 Nucleotide Intervals , 2000, Cell.
[26] R. Lehmann,et al. Targeted mRNA degradation by double-stranded RNA in vitro. , 1999, Genes & development.
[27] A. Arkin,et al. It's a noisy business! Genetic regulation at the nanomolar scale. , 1999, Trends in genetics : TIG.
[28] J. Niemantsverdriet,et al. Chemical kinetics and catalysis , 1995 .
[29] H. L. Sänger,et al. RNA-directed RNA polymerase from tomato leaves. II. Catalytic in vitro properties. , 1993, The Journal of biological chemistry.
[30] D. Turner,et al. Sequence dependence for the energetics of dangling ends and terminal base pairs in ribonucleic acid. , 1987, Biochemistry.
[31] H. S. Fogler,et al. Elements of Chemical Reaction Engineering , 1986 .
[32] Douglas H. Turner,et al. Effects of 3' dangling end stacking on the stability of GGCC and CCGG double helixes , 1983 .
[33] D. Turner,et al. Base-stacking and base-pairing contributions to helix stability: thermodynamics of double-helix formation with CCGG, CCGGp, CCGGAp, ACCGGp, CCGGUp, and ACCGGUp. , 1983, Biochemistry.
[34] D. Gillespie. Exact Stochastic Simulation of Coupled Chemical Reactions , 1977 .