论文信息 - GeneSpringTM: Tools for Analyzing Microarray Expression Data

GeneSpringTM: Tools for Analyzing Microarray Expression Data

Silicon Genetics has developed a comprehensive expression data analysis workbench solution, GeneSpring, which (1) comes with an intuitive interface incorporating organized file management, (2) handles data from multiple array formats, (3) includes multiple data display formats, (4) includes a suite of statistical clustering tools, and (5) incorporates automated annotation and cross-referencing. In this abstract, we outline the set of tools that comprise GeneSpring as a means to survey current methods of analysis.

[1] Ronald W. Davis,et al. The core meiotic transcriptome in budding yeasts , 2000, Nature Genetics.

[2] Michael Primig,et al. Analysis of the Meiotic Transcriptome in Genetically Distinct Budding Yeasts Using High Density Oligonucleotide Arrays , 2000 .

[3] E. Manos,et al. Assessment of tumor necrosis factor receptor and Fas signaling pathways by transcriptional profiling. , 2001, Cancer research.

[4] Dyann F. Wirth,et al. Technical Assessment of the Affymetrix Yeast Expression GeneChip YE6100 Platform in a Heterologous Model of Genes That Confer Resistance to Antimalarial Drugs in Yeast , 2000, Journal of Clinical Microbiology.

[5] J. Zavadil,et al. Genetic programs of epithelial cell plasticity directed by transforming growth factor-β , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[6] P. Sopp. Cluster analysis. , 1996, Veterinary immunology and immunopathology.

[7] Ronald W. Davis,et al. A genome-wide transcriptional analysis of the mitotic cell cycle. , 1998, Molecular cell.

[8] D. Botstein,et al. Cluster analysis and display of genome-wide expression patterns. , 1998, Proceedings of the National Academy of Sciences of the United States of America.