Genetic association mapping and genome organization of maize.

[1]  J. Veyrieras,et al.  Maize Adaptation to Temperate Climate: Relationship Between Population Structure and Polymorphism in the Dwarf8 Gene , 2006, Genetics.

[2]  M. McMullen,et al.  A unified mixed-model method for association mapping that accounts for multiple levels of relatedness , 2006, Nature Genetics.

[3]  John Doebley,et al.  Maize association population: a high-resolution platform for quantitative trait locus dissection. , 2005, The Plant journal : for cell and molecular biology.

[4]  Giorgio Pea,et al.  Origins, genetic organization and transcription of a family of non-autonomous helitron elements in maize. , 2005, The Plant journal : for cell and molecular biology.

[5]  M. Morgante,et al.  Gene duplication and exon shuffling by helitron-like transposons generate intraspecies diversity in maize , 2005, Nature Genetics.

[6]  J. Reif,et al.  Linkage disequilibrium in European elite maize germplasm investigated with SSRs , 2005, Theoretical and Applied Genetics.

[7]  Joachim Messing,et al.  Gene movement by Helitron transposons contributes to the haplotype variability of maize. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[8]  A. Melchinger,et al.  Validation of Dwarf8 polymorphisms associated with flowering time in elite European inbred lines of maize (Zea mays L.) , 2005, Theoretical and Applied Genetics.

[9]  Steven G. Schroeder,et al.  The Effects of Artificial Selection on the Maize Genome , 2005, Science.

[10]  Mattias Jakobsson,et al.  The Pattern of Polymorphism in Arabidopsis thaliana , 2005, PLoS biology.

[11]  M. McMullen,et al.  Association analysis of candidate genes for maysin and chlorogenic acid accumulation in maize silks , 2005, Theoretical and Applied Genetics.

[12]  Shizhong Xu,et al.  Mapping Quantitative Trait Loci Using Naturally Occurring Genetic Variance Among Commercial Inbred Lines of Maize (Zea mays L.) , 2005, Genetics.

[13]  R. Bernardo,et al.  Power of in silico QTL mapping from phenotypic, pedigree, and marker data in a hybrid breeding program , 2005, Theoretical and Applied Genetics.

[14]  Andy Pereira,et al.  Faculty Opinions recommendation of Evolution of DNA sequence nonhomologies among maize inbreds. , 2005 .

[15]  Amanda J. Garris,et al.  Genetic Structure and Diversity in Oryza sativa L. , 2005, Genetics.

[16]  P. Morrell,et al.  Low levels of linkage disequilibrium in wild barley (Hordeum vulgare ssp. spontaneum) despite high rates of self-fertilization. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[17]  M. Daly,et al.  Genome-wide association studies for common diseases and complex traits , 2005, Nature Reviews Genetics.

[18]  P. Ingvarsson Nucleotide Polymorphism and Linkage Disequilibrium Within and Among Natural Populations of European Aspen (Populus tremula L., Salicaceae) , 2005, Genetics.

[19]  J. Veyrieras,et al.  Maize adaptation to temperate climate : relationship with population structure and polymorphism in the Dwarf 8 gene , 2005 .

[20]  C. Laurie,et al.  The Genetic Architecture of Response to Long-Term Artificial Selection for Oil Concentration in the Maize Kernel , 2004, Genetics.

[21]  Alain Charcosset,et al.  Genetic Architecture of Flowering Time in Maize As Inferred From Quantitative Trait Loci Meta-analysis and Synteny Conservation With the Rice Genome , 2004, Genetics.

[22]  Garth R. Brown,et al.  Nucleotide diversity and linkage disequilibrium in loblolly pine. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[23]  R. Wing,et al.  Sequence composition and genome organization of maize. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[24]  J. Bennetzen,et al.  Gene loss and movement in the maize genome. , 2004, Genome research.

[25]  T. Rocheford,et al.  Dissection of Maize Kernel Composition and Starch Production by Candidate Gene Association , 2004, The Plant Cell Online.

[26]  M. Morgante,et al.  Linkage disequilibrium and sequence diversity in a 500-kbp region around the adh1 locus in elite maize germplasm , 2004, Theoretical and Applied Genetics.

[27]  M. Morgante,et al.  Long-range patterns of diversity and linkage disequilibrium surrounding the maize Y1 gene are indicative of an asymmetric selective sweep. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[28]  R. Bernardo,et al.  In silico mapping of quantitative trait loci in maize , 2004, Theoretical and Applied Genetics.

[29]  A. Paterson,et al.  Comparative Population Genetics of the Panicoid Grasses: Sequence Polymorphism, Linkage Disequilibrium and Selection in a Diverse Sample of Sorghum bicolor , 2004, Genetics.

[30]  W. McCombie,et al.  Sequencing the maize genome. , 2004, Current opinion in plant biology.

[31]  T. Rocheford,et al.  QTL and candidate genes phytoene synthase and ζ-carotene desaturase associated with the accumulation of carotenoids in maize , 2004, Theoretical and Applied Genetics.

[32]  S. Muse,et al.  Genetic structure and diversity among maize inbred lines as inferred from DNA microsatellites. , 2003, Genetics.

[33]  E. Buckler,et al.  Structure of linkage disequilibrium in plants. , 2003, Annual review of plant biology.

[34]  Amanda J. Garris,et al.  Population structure and its effect on haplotype diversity and linkage disequilibrium surrounding the xa5 locus of rice (Oryza sativa L.). , 2003, Genetics.

[35]  M. Morgante,et al.  Contrasting Effects of Selection on Sequence Diversity and Linkage Disequilibrium at Two Phytoene Synthase Loci Online version contains Web-only data. Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.012526. , 2003, The Plant Cell Online.

[36]  M. Stephens,et al.  Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies. , 2003, Genetics.

[37]  A. Long,et al.  The Lowdown on Linkage Disequilibrium , 2003, The Plant Cell Online.

[38]  E. Buckler,et al.  Using natural allelic diversity to evaluate gene function. , 2003, Methods in molecular biology.

[39]  Mark Jung,et al.  SNP frequency, haplotype structure and linkage disequilibrium in elite maize inbred lines , 2002, BMC Genetics.

[40]  B. Gaut,et al.  Genetic diversity and selection in the maize starch pathway , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[41]  H. Fu,et al.  Intraspecific violation of genetic colinearity and its implications in maize , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[42]  E. Buckler,et al.  Plant molecular diversity and applications to genomics. , 2002, Current opinion in plant biology.

[43]  P. Oefner,et al.  The extent of linkage disequilibrium in Arabidopsis thaliana , 2002, Nature Genetics.

[44]  T. Mackay The genetic architecture of quantitative traits. , 2001, Annual review of genetics.

[45]  E S Buckler,et al.  Structure of linkage disequilibrium and phenotypic associations in the maize genome , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[46]  Brandon S. Gaut,et al.  Patterns of DNA sequence polymorphism along chromosome 1 of maize (Zea mays ssp. mays L.) , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[47]  Edward S. Buckler,et al.  Dwarf8 polymorphisms associate with variation in flowering time , 2001, Nature Genetics.

[48]  J. Pritchard Deconstructing maize population structure , 2001, Nature Genetics.

[49]  P. Donnelly,et al.  Inference of population structure using multilocus genotype data. , 2000, Genetics.

[50]  K. Roeder,et al.  Genomic Control for Association Studies , 1999, Biometrics.

[51]  J. Pritchard,et al.  Use of unlinked genetic markers to detect population stratification in association studies. , 1999, American journal of human genetics.

[52]  N Risch,et al.  The Future of Genetic Studies of Complex Human Diseases , 1996, Science.