BichiCAM, an Underwater Automated Video Tracking System for the Study of Migratory Dynamics of Benthic Diadromous Species in Streams

Conventional methods for surveying diadromous fish migration from marine coastal waters to freshwater habitats are mainly based on electrofishing, a non-optimal technique for the study of fish migrations in rivers, and fishermen catch data. Underwater video has been recognized for a long time as a good alternative, but those approaches usually require intensive labour for retrieving the information from the video sequences. To overcome these problems, an underwater video system specifically designed for field work (low-weight, low-cost and autonomous) named BichiCAM has been developed for automatically counting, measuring and tracking fish observed in video sequences. The efficiency and precision of the BichiCAM system were tested by filming Sicyopterus lagocephalus juveniles passing through the camera field of vision in the Saint-Etienne River, Reunion Island, Western Indian Ocean. The BichiCAM system accurately measured fish length of the observed individuals when lens distortion of the camera was corrected, and the error percentages on the measurements presented a standard deviation of 5.1% of the total length. The BichiCAM system provides a powerful tool that will not only facilitate research on migrating fishes and invertebrates' communities but also allow studies of the effectiveness of fishways associated to dams or the impacts of fishery activities. Copyright © 2015 John Wiley & Sons, Ltd.

[1]  O. Weyl,et al.  Underwater video analysis as a non-destructive alternative to electrofishing for sampling imperilled headwater stream fishes , 2012 .

[2]  G. Myers Usage of anadromous, catadromous and allied terms for migratory fishes , 1949 .

[3]  R. Blob,et al.  Kinematics of waterfall climbing in Hawaiian freshwater fishes (Gobiidae): vertical propulsion at the aquatic-terrestrial interface , 2003 .

[4]  Martin J. Cox,et al.  A Robust and Economical Underwater Stereo Video System to Observe Antarctic Krill (Euphausia superba) , 2013 .

[5]  Clara Lord-Daunay Amphidromie, endémisme et dispersion : traits d'histoire de vie et histoire évolutive du genre Sicyopterus (Teleostei : Gobioidei : Sicydiinae) , 2009 .

[6]  J. Labonne,et al.  Habitat selection in amphidromous Gobiidae of Reunion Island: Sicyopterus lagocephalus (Pallas, 1770) and Cotylopus acutipinnis (Guichenot, 1863) , 2013, Environmental Biology of Fishes.

[7]  P. Hufschmied,et al.  Automatic stress‐free sorting of sturgeons inside culture tanks using image processing , 2011 .

[8]  J. Borcherding,et al.  Lateral migrations of fishes between floodplain lakes and their drainage channels at the Lower Rhine: diel and seasonal aspects , 2002 .

[9]  J. Lines,et al.  An automatic image-based system for estimating the mass of free-swimming fish , 2001 .

[10]  A. Pérez-Escudero,et al.  idTracker: tracking individuals in a group by automatic identification of unmarked animals , 2014, Nature Methods.

[11]  Pascal Poncin,et al.  A video multitracking system for quantification of individual behavior in a large fish shoal: Advantages and limits , 2009, Behavior research methods.

[12]  K. Tsukamoto,et al.  Recruitment of the amphidromous goby Sicyopterus japonicus to the estuary of the Ota River, Wakayama, Japan , 2008, Environmental Biology of Fishes.

[13]  Pietro Perona,et al.  Automated image-based tracking and its application in ecology. , 2014, Trends in ecology & evolution.

[14]  P. Pepin,et al.  Seasonal, inverse cycling of length- and age-at-recruitment in the diadromous gobies Sicydium punctatum and Sicydium antillarum in Dominica, West Indies , 1995 .

[15]  A. Brasher Impacts of Human Disturbances on Biotic Communities in Hawaiian Streams , 2003 .

[16]  M. Heithaus,et al.  Animal-borne video reveals seasonal activity patterns of green sea turtles and the importance of accounting for capture stress in short-term biologging , 2014 .

[17]  Zhengyou Zhang,et al.  A Flexible New Technique for Camera Calibration , 2000, IEEE Trans. Pattern Anal. Mach. Intell..

[18]  R. McDowall Diadromy, history and ecology: a question of scale , 2008, Hydrobiologia.

[19]  Kathleen M. Carter,et al.  An Evaluation of the Maximum Tag Burden for Implantation of Acoustic Transmitters in Juvenile Chinook Salmon , 2010 .

[20]  B. Ebner,et al.  In-stream behaviour of threatened fishes and their food organisms based on remote video monitoring , 2009, Aquatic Ecology.

[21]  Domenici,et al.  The kinematics and performance of fish fast-start swimming , 1997, The Journal of experimental biology.

[22]  Frederic Fol Leymarie,et al.  Fast raster scan distance propagation on the discrete rectangular lattice , 1992, CVGIP Image Underst..

[23]  A. Ramírez,et al.  Urban impacts on tropical island streams: Some key aspects influencing ecosystem response , 2011, Urban Ecosystems.

[24]  Nils Teichert Variabilité des traits d’histoire de vie chez les Gobiidae (Sicydiinae) amphidromes de l’île de la Réunion : Sicyopterus lagocephalus (Pallas, 1770) et Cotylopus acutipinnis (Guichenot, 1863) , 2012 .

[25]  Bastien Sadoul,et al.  A new method for measuring group behaviours of fish shoals from recorded videos taken in near aquaculture conditions , 2014 .

[26]  Pascal Poncin,et al.  Video multitracking of fish behaviour: a synthesis and future perspectives , 2013 .

[27]  O. Fiksen,et al.  The evolution of spawning migrations: state dependence and fishing-induced changes. , 2008, Ecology.

[28]  Pamela C. Cosman,et al.  Automatic tracking, feature extraction and classification of C. elegans phenotypes , 2004, IEEE Transactions on Biomedical Engineering.

[29]  C. M. Way,et al.  The Use of Two Modified Breder Traps to Quantitatively Study Amphidromous Upstream Migration , 2004, Hydrobiologia.

[30]  Johannes E. Schindelin,et al.  Fiji: an open-source platform for biological-image analysis , 2012, Nature Methods.

[31]  R. McDowall Early hatch: a strategy for safe downstream larval transport in amphidromous gobies , 2009, Reviews in Fish Biology and Fisheries.

[32]  Norval J. C. Strachan,et al.  Automated measurement of species and length of fish by computer vision , 2006 .

[33]  L P Noldus,et al.  EthoVision: A versatile video tracking system for automation of behavioral experiments , 2001, Behavior research methods, instruments, & computers : a journal of the Psychonomic Society, Inc.

[34]  Matthew D. Taylor,et al.  Evaluation of a novel external tag-mount for acoustic tracking of small fish , 2014 .

[35]  R. Kinzie,et al.  Temporal and spatial variation in length of larval life and size at settlement of the Hawaiian amphidromous goby Lentipes concolor , 2001 .

[36]  Frank J. Loge,et al.  Automated Detection and Tracking of Adult Pacific Lampreys in Underwater Video Collected at Snake and Columbia River Fishways , 2014 .