Effects of green tea on miRNA and microbiome of oral epithelium

[1]  J. Lusson,et al.  SUBSTANTIAL VARIABILITY ACROSS INDIVIDUALS IN THE VASCULAR RESPONSE AND NUTRIGENOMIC RESPONSE TO AN ACUTE INTAKE OF CURCUMIN: A RANDOMISED CONTROLLED TRIAL , 2018, Journal of Hypertension.

[2]  Artemis G. Hatzigeorgiou,et al.  DIANA-TarBase v8: a decade-long collection of experimentally supported miRNA–gene interactions , 2017, Nucleic Acids Res..

[3]  Chenping Zhang,et al.  Variations in oral microbiota associated with oral cancer , 2017, Scientific Reports.

[4]  C. la Vecchia,et al.  Hormone factors play a favorable role in female head and neck cancer risk , 2017, Cancer medicine.

[5]  D. Grenier,et al.  Tea polyphenols inhibit the growth and virulence properties of Fusobacterium nucleatum , 2017, Scientific Reports.

[6]  H. Mo,et al.  Therapeutic properties of green tea against environmental insults. , 2017, The Journal of nutritional biochemistry.

[7]  A. Kolokythas,et al.  microRNA from brush biopsy to characterize oral squamous cell carcinoma epithelium , 2016, Cancer medicine.

[8]  S. Katiyar Emerging Phytochemicals for the Prevention and Treatment of Head and Neck Cancer , 2016, Molecules.

[9]  F. Scannapieco,et al.  Oral inflammation and infection, and chronic medical diseases: implications for the elderly. , 2016, Periodontology 2000.

[10]  D. Sidransky,et al.  16S rRNA amplicon sequencing identifies microbiota associated with oral cancer, human papilloma virus infection and surgical treatment , 2016, Oncotarget.

[11]  Hong Wang,et al.  Lessons learned from cancer prevention studies with nutrients and non-nutritive dietary constituents. , 2016, Molecular nutrition & food research.

[12]  M. Westerterp-Plantenga,et al.  Long-Term Green Tea Supplementation Does Not Change the Human Gut Microbiota , 2016, PloS one.

[13]  R. Mckinnon,et al.  Manipulation of the gut microbiota using resistant starch is associated with protection against colitis-associated colorectal cancer in rats. , 2016, Carcinogenesis.

[14]  R. Hayes,et al.  Cigarette smoking and the oral microbiome in a large study of American adults , 2016, The ISME Journal.

[15]  E. Çapanoğlu,et al.  The Reciprocal Interactions between Polyphenols and Gut Microbiota and Effects on Bioaccessibility , 2016, Nutrients.

[16]  S. Varghese,et al.  Herbs as an antioxidant arsenal for periodontal diseases , 2016, Journal of intercultural ethnopharmacology.

[17]  Jianhua Chen,et al.  Bioinformatics Analysis of the Effects of Tobacco Smoke on Gene Expression , 2015, PloS one.

[18]  G. Duchateau,et al.  Capsule Formats May Hamper Green Tea Catechin Bioavailability. , 2015, The Journal of nutrition.

[19]  A. Kolokythas,et al.  Similar Squamous Cell Carcinoma Epithelium microRNA Expression in Never Smokers and Ever Smokers , 2015, PloS one.

[20]  S. Green,et al.  Deconstructing the Polymerase Chain Reaction: Understanding and Correcting Bias Associated with Primer Degeneracies and Primer-Template Mismatches , 2015, PloS one.

[21]  Artemis G. Hatzigeorgiou,et al.  DIANA-miRPath v3.0: deciphering microRNA function with experimental support , 2015, Nucleic Acids Res..

[22]  Hans Bitter,et al.  Persistence of Smoking-Induced Dysregulation of MiRNA Expression in the Small Airway Epithelium Despite Smoking Cessation , 2015, PloS one.

[23]  Jonathan van Eyll,et al.  Pathway analysis from lists of microRNAs: common pitfalls and alternative strategy , 2015, Nucleic acids research.

[24]  F. Gao,et al.  Epigallocatechin gallate inhibits human tongue carcinoma cells via HK2‑mediated glycolysis. , 2015, Oncology reports.

[25]  A. Kong,et al.  MicroRNAs: new Players in Cancer Prevention Targeting Nrf2, Oxidative Stress and Inflammatory Pathways , 2015, Current Pharmacology Reports.

[26]  A. Collins,et al.  Redox-linked effects of green tea on DNA damage and repair, and influence of microsatellite polymorphism in HMOX-1: results of a human intervention trial. , 2015, Mutagenesis.

[27]  Andrew H. Beck,et al.  Etiologic field effect: reappraisal of the field effect concept in cancer predisposition and progression , 2015, Modern Pathology.

[28]  Hong Wang,et al.  Gene regulation mediated by microRNAs in response to green tea polyphenol EGCG in mouse lung cancer , 2014, BMC Genomics.

[29]  Shyam Sivasamy,et al.  In vitro antibacterial activity of Camellia sinensis extract against cariogenic microorganisms , 2014, Journal of basic and clinical pharmacy.

[30]  Wen-Hui Han,et al.  Tea Intake and Risk of Oral, Pharyngeal, and Laryngeal Carcinoma: A Meta-Analysis , 2014, Medical science monitor : international medical journal of experimental and clinical research.

[31]  Robert G. Beiko,et al.  STAMP: statistical analysis of taxonomic and functional profiles , 2014, Bioinform..

[32]  W. Reygaert The antimicrobial possibilities of green tea , 2014, Front. Microbiol..

[33]  S. Amin,et al.  In vivo detection of a novel endogenous etheno-DNA adduct derived from arachidonic acid and the effects of antioxidants on its formation. , 2014, Free radical biology & medicine.

[34]  Adam B. Olshen,et al.  Changes in Abundance of Oral Microbiota Associated with Oral Cancer , 2014, PloS one.

[35]  I. Benzie,et al.  Effects of single dose and regular intake of green tea (Camellia sinensis) on DNA damage, DNA repair, and heme oxygenase-1 expression in a randomized controlled human supplementation study. , 2014, Molecular nutrition & food research.

[36]  Jesse J Plascak,et al.  Evaluation of web-based, self-administered, graphical food frequency questionnaire. , 2014, Journal of the Academy of Nutrition and Dietetics.

[37]  Raymond J Carroll,et al.  The Healthy Eating Index-2010 is a valid and reliable measure of diet quality according to the 2010 Dietary Guidelines for Americans. , 2014, The Journal of nutrition.

[38]  Jiajie Zhang,et al.  PEAR: a fast and accurate Illumina Paired-End reAd mergeR , 2013, Bioinform..

[39]  Mina Sakuma,et al.  Effect of dietary supplementation of (-)-epigallocatechin gallate on gut microbiota and biomarkers of colonic fermentation in rats. , 2014, Journal of nutritional science and vitaminology.

[40]  S. H. Lee,et al.  Epigallocatechin-3-gallate attenuates head and neck cancer stem cell traits through suppression of Notch pathway. , 2013, European journal of cancer.

[41]  B. Jude,et al.  miRNA as molecular target of polyphenols underlying their biological effects. , 2013, Free radical biology & medicine.

[42]  S. Fuqua,et al.  In vitro mechanism for downregulation of ER-α expression by epigallocatechin gallate in ER+/PR+ human breast cancer cells. , 2013, Molecular nutrition & food research.

[43]  M. Fani,et al.  Inhibitory Activity of Green Tea (Camellia sinensis) Extract on Some Clinically Isolated Cariogenic and Periodontopathic Bacteria , 2013, Medical Principles and Practice.

[44]  H A Erlich,et al.  High throughput HLA genotyping using 454 sequencing and the Fluidigm Access Array™ System for simplified amplicon library preparation. , 2013, Tissue antigens.

[45]  J. Buer,et al.  Anti‐infective properties of epigallocatechin‐3‐gallate (EGCG), a component of green tea , 2013, British journal of pharmacology.

[46]  D. Fergusson,et al.  Green Tea and Lung Cancer , 2013, Integrative cancer therapies.

[47]  J. Brody Transcriptome alterations induced by cigarette smoke , 2012, International journal of cancer.

[48]  Y. Benno,et al.  Effects of green tea consumption on human fecal microbiota with special reference to Bifidobacterium species , 2012, Microbiology and immunology.

[49]  I. Benzie,et al.  Comparison of catechin profiles in human plasma and urine after single dosing and regular intake of green tea (Camellia sinensis) , 2012, British Journal of Nutrition.

[50]  Levi Waldron,et al.  Composition of the adult digestive tract bacterial microbiome based on seven mouth surfaces, tonsils, throat and stool samples , 2012, Genome Biology.

[51]  D. Aizenbud,et al.  Green tea: a promising natural product in oral health. , 2012, Archives of oral biology.

[52]  Ivo Grosse,et al.  Functional microRNA targets in protein coding sequences , 2012, Bioinform..

[53]  B. Birren,et al.  Genomic analysis identifies association of Fusobacterium with colorectal carcinoma. , 2012, Genome research.

[54]  Richard A. Moore,et al.  Fusobacterium nucleatum infection is prevalent in human colorectal carcinoma. , 2012, Genome research.

[55]  A. Scalbert,et al.  Modulation of miRNA Expression by Dietary Polyphenols in apoE Deficient Mice: A New Mechanism of the Action of Polyphenols , 2012, PloS one.

[56]  T. Chan,et al.  Recent advances on tea polyphenols. , 2012, Frontiers in bioscience.

[57]  Mark J. Clement,et al.  Targeted Amplicon Sequencing (TAS): A Scalable Next-Gen Approach to Multilocus, Multitaxa Phylogenetics , 2011, Genome biology and evolution.

[58]  D. Zaykin,et al.  Optimally weighted Z‐test is a powerful method for combining probabilities in meta‐analysis , 2011, Journal of evolutionary biology.

[59]  Chi-Tang Ho,et al.  The chemistry and biotransformation of tea constituents. , 2011, Pharmacological research.

[60]  C. Huttenhower,et al.  Metagenomic biomarker discovery and explanation , 2011, Genome Biology.

[61]  Hong Wang,et al.  Mechanistic issues concerning cancer prevention by tea catechins. , 2011, Molecular nutrition & food research.

[62]  I. Brook The Impact of Smoking on Oral and Nasopharyngeal Bacterial Flora , 2011, Journal of dental research.

[63]  Bryan A. White,et al.  Characterization of the Fecal Microbiome from Non-Human Wild Primates Reveals Species Specific Microbial Communities , 2010, PloS one.

[64]  N. Pellegrini,et al.  Bioavailability and catabolism of green tea flavan-3-ols in humans. , 2010, Nutrition.

[65]  Robert C. Edgar,et al.  Search and clustering orders of magnitude faster than BLAST , 2010, Bioinform..

[66]  William A. Walters,et al.  QIIME allows analysis of high-throughput community sequencing data , 2010, Nature Methods.

[67]  Akiko Takagaki,et al.  Metabolism of (-)-epigallocatechin gallate by rat intestinal flora. , 2010, Journal of agricultural and food chemistry.

[68]  Xin Wang,et al.  Cancer prevention by tea: animal studies, molecular mechanisms and human relevance , 2009, Nature Reviews Cancer.

[69]  Mihai Pop,et al.  Statistical Methods for Detecting Differentially Abundant Features in Clinical Metagenomic Samples , 2009, PLoS Comput. Biol..

[70]  B. Halliwell Are polyphenols antioxidants or pro-oxidants? What do we learn from cell culture and in vivo studies? , 2008, Archives of biochemistry and biophysics.

[71]  Robin B Harris,et al.  Green tea consumption is associated with decreased DNA damage among GSTM1-positive smokers regardless of their hOGG1 genotype. , 2008, The Journal of nutrition.

[72]  Julie E. Zeskind,et al.  Smoking-induced gene expression changes in the bronchial airway are reflected in nasal and buccal epithelium , 2008, BMC Genomics.

[73]  A. Tamakoshi,et al.  A prospective study of green tea consumption and oral cancer incidence in Japan. , 2007, Annals of epidemiology.

[74]  R. Lamuela-Raventós,et al.  A new LC/MS/MS rapid and sensitive method for the determination of green tea catechins and their metabolites in biological samples. , 2007, Journal of agricultural and food chemistry.

[75]  Yingdong Zhao,et al.  Analysis of Gene Expression Data Using BRB-Array Tools , 2007, Cancer informatics.

[76]  Cheng Li,et al.  Adjusting batch effects in microarray expression data using empirical Bayes methods. , 2007, Biostatistics.

[77]  Yuan-Kun Lee,et al.  Effect of tea phenolics and their aromatic fecal bacterial metabolites on intestinal microbiota. , 2006, Research in microbiology.

[78]  Ming You,et al.  A gene expression signature that can predict green tea exposure and chemopreventive efficacy of lung cancer in mice. , 2006, Cancer research.

[79]  M. Whitlock Combining probability from independent tests: the weighted Z‐method is superior to Fisher's approach , 2005, Journal of evolutionary biology.

[80]  E. Fiala,et al.  Induction of preneoplastic lung lesions in guinea pigs by cigarette smoke inhalation and their exacerbation by high dietary levels of vitamins C and E. , 2005, Carcinogenesis.

[81]  J. Schwartz,et al.  Molecular and cellular effects of green tea on oral cells of smokers: a pilot study. , 2005, Molecular nutrition & food research.

[82]  Joseph Rafter,et al.  Health promotion by flavonoids, tocopherols, tocotrienols, and other phenols: direct or indirect effects? Antioxidant or not? , 2005, The American journal of clinical nutrition.

[83]  Rainer Breitling,et al.  Rank products: a simple, yet powerful, new method to detect differentially regulated genes in replicated microarray experiments , 2004, FEBS letters.

[84]  Gang Liu,et al.  Effects of cigarette smoke on the human airway epithelial cell transcriptome. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[85]  John D. Storey,et al.  Statistical significance for genomewide studies , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[86]  Richard M. Simon,et al.  Methods for assessing reproducibility of clustering patterns observed in analyses of microarray data , 2002, Bioinform..

[87]  M. Sopori,et al.  Effects of cigarette smoke on the immune system , 2002, Nature Reviews Immunology.

[88]  Neil Hunter,et al.  Determination of bacterial load by real-time PCR using a broad-range (universal) probe and primers set. , 2002, Microbiology.

[89]  L. Juneja,et al.  Improvement of intestinal microflora balance and prevention of digestive and respiratory organ diseases in calves by green tea extracts , 2001 .

[90]  C. Ho,et al.  Structural identification of two metabolites of catechins and their kinetics in human urine and blood after tea ingestion. , 2000, Chemical research in toxicology.

[91]  H. Witschi,et al.  SUCCESSFUL AND NOT SO SUCCESSFUL CHEMOPREVENTION OF TOBACCO SMOKE-INDUCED LUNG TUMORS , 2000, Experimental lung research.

[92]  J. Dallinga,et al.  Effect of ascorbic acid and green tea on endogenous formation of N-nitrosodimethylamine and N-nitrosopiperidine in humans. , 1999, Mutation research.

[93]  Laishun Chen,et al.  Human salivary tea catechin levels and catechin esterase activities: implication in human cancer prevention studies. , 1999, Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology.

[94]  Y. Hara Influence of tea catechins on the digestive tract , 1997, Journal of cellular biochemistry. Supplement.

[95]  T. Mitsuoka,et al.  In Vivo Effects of Tea Polyphenol Intake on Human Intestinal Microflora and Metabolism. , 1992, Bioscience, biotechnology, and biochemistry.

[96]  A. Magurran Ecological Diversity and Its Measurement , 1988, Springer Netherlands.

[97]  R. Bowles,et al.  The effect of cigarette smoking on anaerobiosis in the oral cavity. , 1975, Journal of periodontology.