Universal data-based method for reconstructing complex networks with binary-state dynamics.

To understand, predict, and control complex networked systems, a prerequisite is to reconstruct the network structure from observable data. Despite recent progress in network reconstruction, binary-state dynamics that are ubiquitous in nature, technology, and society still present an outstanding challenge in this field. Here we offer a framework for reconstructing complex networks with binary-state dynamics by developing a universal data-based linearization approach that is applicable to systems with linear, nonlinear, discontinuous, or stochastic dynamics governed by monotonic functions. The linearization procedure enables us to convert the network reconstruction into a sparse signal reconstruction problem that can be resolved through convex optimization. We demonstrate generally high reconstruction accuracy for a number of complex networks associated with distinct binary-state dynamics from using binary data contaminated by noise and missing data. Our framework is completely data driven, efficient, and robust, and does not require any a priori knowledge about the detailed dynamical process on the network. The framework represents a general paradigm for reconstructing, understanding, and exploiting complex networked systems with binary-state dynamics.

[1]  G. Szabó,et al.  Evolutionary games on graphs , 2006, cond-mat/0607344.

[2]  E.J. Candes,et al.  An Introduction To Compressive Sampling , 2008, IEEE Signal Processing Magazine.

[3]  Alessandro Vespignani,et al.  Phase transitions in contagion processes mediated by recurrent mobility patterns , 2011, Nature physics.

[4]  Wen-Xu Wang,et al.  Time-series–based prediction of complex oscillator networks via compressive sensing , 2011 .

[5]  Wen-Xu Wang,et al.  Reconstructing propagation networks with natural diversity and identifying hidden sources , 2014, Nature Communications.

[6]  S. Redner,et al.  Voter model on heterogeneous graphs. , 2004, Physical review letters.

[7]  S. Frick,et al.  Compressed Sensing , 2014, Computer Vision, A Reference Guide.

[8]  F. C. Santos,et al.  Scale-free networks provide a unifying framework for the emergence of cooperation. , 2005, Physical review letters.

[9]  Alessandro Vespignani,et al.  Epidemic spreading in scale-free networks. , 2000, Physical review letters.

[10]  Wen-Xu Wang,et al.  Predicting catastrophes in nonlinear dynamical systems by compressive sensing. , 2011, Physical review letters.

[11]  Mark Newman,et al.  Networks: An Introduction , 2010 .

[12]  M. Newman,et al.  Hierarchical structure and the prediction of missing links in networks , 2008, Nature.

[13]  Mark Goadrich,et al.  The relationship between Precision-Recall and ROC curves , 2006, ICML.

[14]  Wen-Xu Wang,et al.  Noise bridges dynamical correlation and topology in coupled oscillator networks. , 2010, Physical review letters.

[15]  A. Barabasi,et al.  Network link prediction by global silencing of indirect correlations , 2013, Nature Biotechnology.

[16]  Stefan Wuchty,et al.  Controllability in protein interaction networks , 2014, Proceedings of the National Academy of Sciences.

[17]  S. Fortunato,et al.  Statistical physics of social dynamics , 2007, 0710.3256.

[18]  Massimo Fornasier,et al.  Compressive Sensing , 2015, Handbook of Mathematical Methods in Imaging.

[19]  Harry Eugene Stanley,et al.  Catastrophic cascade of failures in interdependent networks , 2009, Nature.

[20]  J. Gleeson Binary-state dynamics on complex networks: pair approximation and beyond , 2012, 1209.2983.

[21]  Duncan J. Watts,et al.  Collective dynamics of ‘small-world’ networks , 1998, Nature.

[22]  Albert,et al.  Emergence of scaling in random networks , 1999, Science.

[23]  J. Romberg,et al.  Imaging via Compressive Sampling , 2008, IEEE Signal Processing Magazine.

[24]  M. J. Oliveira,et al.  Isotropic majority-vote model on a square lattice , 1992 .

[25]  J. Collins,et al.  Inferring Genetic Networks and Identifying Compound Mode of Action via Expression Profiling , 2003, Science.

[26]  E. Candès,et al.  Stable signal recovery from incomplete and inaccurate measurements , 2005, math/0503066.

[27]  Alessandro Vespignani,et al.  Dynamical Processes on Complex Networks , 2008 .

[28]  Mark S. Granovetter Threshold Models of Collective Behavior , 1978, American Journal of Sociology.

[29]  A. Barabasi,et al.  The network takeover , 2011, Nature Physics.

[30]  S. Havlin,et al.  The extreme vulnerability of interdependent spatially embedded networks , 2012, Nature Physics.

[31]  Albert-László Barabási,et al.  Controllability of complex networks , 2011, Nature.

[32]  Gaël Varoquaux,et al.  Scikit-learn: Machine Learning in Python , 2011, J. Mach. Learn. Res..

[33]  Shilpa Chakravartula,et al.  Complex Networks: Structure and Dynamics , 2014 .

[34]  Alan Kirman,et al.  Ants, Rationality, and Recruitment , 1993 .

[35]  Nir Friedman,et al.  Inferring Cellular Networks Using Probabilistic Graphical Models , 2004, Science.

[36]  Sergio Gómez,et al.  On the dynamical interplay between awareness and epidemic spreading in multiplex networks , 2013, Physical review letters.

[37]  Xiao Han,et al.  Robust Reconstruction of Complex Networks from Sparse Data , 2015, Physical review letters.

[38]  Piet Van Mieghem,et al.  Epidemic processes in complex networks , 2014, ArXiv.

[39]  J. Franklin,et al.  The elements of statistical learning: data mining, inference and prediction , 2005 .

[40]  Arkady Pikovsky,et al.  Network reconstruction from random phase resetting. , 2010, Physical review letters.

[41]  S. Battiston,et al.  The power to control , 2013, Nature Physics.

[42]  Jieping Ye,et al.  Network Reconstruction Based on Evolutionary-Game Data via Compressive Sensing , 2011, Physical Review X.

[43]  S. Redner,et al.  A Kinetic View of Statistical Physics , 2010 .

[44]  R. Glauber Time‐Dependent Statistics of the Ising Model , 1963 .

[45]  Derek Ruths,et al.  Control Profiles of Complex Networks , 2014, Science.

[46]  Marc Timme,et al.  Revealing network connectivity from response dynamics. , 2006, Physical review letters.

[47]  Wen-Xu Wang,et al.  Exact controllability of complex networks , 2013, Nature Communications.

[48]  F. C. Santos,et al.  Social diversity promotes the emergence of cooperation in public goods games , 2008, Nature.

[49]  Jie Ren,et al.  Controlling complex networks: How much energy is needed? , 2012, Physical review letters.

[50]  Muriel Médard,et al.  Network deconvolution as a general method to distinguish direct dependencies in networks , 2013, Nature Biotechnology.

[51]  J Kurths,et al.  Inner composition alignment for inferring directed networks from short time series. , 2011, Physical review letters.

[52]  Shlomo Havlin,et al.  Dynamic opinion model and invasion percolation. , 2009, Physical review letters.

[53]  Jianfeng Feng,et al.  Uncovering Interactions in the Frequency Domain , 2008, PLoS Comput. Biol..

[54]  P. S. Ward ANTS , 1889, Science.

[55]  A. Aertsen,et al.  Spiking activity propagation in neuronal networks: reconciling different perspectives on neural coding , 2010, Nature Reviews Neuroscience.

[56]  P. Erdos,et al.  On the evolution of random graphs , 1984 .

[57]  S. Strogatz,et al.  Linguistics: Modelling the dynamics of language death , 2003, Nature.

[58]  鈴木 増雄 Time-Dependent Statistics of the Ising Model , 1965 .

[59]  Emmanuel J. Candès,et al.  Robust uncertainty principles: exact signal reconstruction from highly incomplete frequency information , 2004, IEEE Transactions on Information Theory.

[60]  G. Caldarelli,et al.  Reconstructing a credit network , 2013, Nature Physics.

[61]  J. Kurths,et al.  Oscillation quenching mechanisms: Amplitude vs. oscillation death , 2013 .

[62]  Tamás Vicsek,et al.  Controlling edge dynamics in complex networks , 2011, Nature Physics.

[63]  Hod Lipson,et al.  Automated reverse engineering of nonlinear dynamical systems , 2007, Proceedings of the National Academy of Sciences.