Hydrogen peroxide-induced oxidative stress responses in Desulfovibrio vulgaris Hildenborough.

To understand how sulphate-reducing bacteria respond to oxidative stresses, the responses of Desulfovibrio vulgaris Hildenborough to H(2)O(2)-induced stresses were investigated with transcriptomic, proteomic and genetic approaches. H(2)O(2) and induced chemical species (e.g. polysulfide, ROS) and redox potential shift increased the expressions of the genes involved in detoxification, thioredoxin-dependent reduction system, protein and DNA repair, and decreased those involved in sulfate reduction, lactate oxidation and protein synthesis. A gene coexpression network analysis revealed complicated network interactions among differentially expressed genes, and suggested possible importance of several hypothetical genes in H(2)O(2) stress. Also, most of the genes in PerR and Fur regulons were highly induced, and the abundance of a Fur regulon protein increased. Mutant analysis suggested that PerR and Fur are functionally overlapped in response to stresses induced by H(2)O(2) and reaction products, and the upregulation of thioredoxin-dependent reduction genes was independent of PerR or Fur. It appears that induction of those stress response genes could contribute to the increased resistance of deletion mutants to H(2)O(2)-induced stresses. In addition, a conceptual cellular model of D. vulgaris responses to H(2)O(2) stress was constructed to illustrate that this bacterium may employ a complicated molecular mechanism to defend against the H(2)O(2)-induced stresses.

[1]  Zhili He,et al.  Global transcriptional, physiological and metabolite analyses of Desulfovibrio vulgaris Hildenborough responses to salt adaptation , 2010 .

[2]  Katherine H. Huang,et al.  Global Transcriptional, Physiological, and Metabolite Analyses of the Responses of Desulfovibrio vulgaris Hildenborough to Salt Adaptation , 2009, Applied and Environmental Microbiology.

[3]  G. Voordouw,et al.  A genomic island of the sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough promotes survival under stress conditions while decreasing the efficiency of anaerobic growth. , 2009, Environmental microbiology.

[4]  J. Imlay Cellular defenses against superoxide and hydrogen peroxide. , 2008, Annual review of biochemistry.

[5]  Jizhong Zhou,et al.  Transcriptional response of Desulfovibrio vulgaris Hildenborough to oxidative stress mimicking environmental conditions , 2008, Archives of Microbiology.

[6]  Feng Luo,et al.  Constructing gene co-expression networks and predicting functions of unknown genes by random matrix theory , 2007, BMC Bioinformatics.

[7]  Adam P. Arkin,et al.  Analysis of a ferric uptake regulator (Fur) mutant of Desulfovibrio vulgaris , 2010 .

[8]  Paramvir S. Dehal,et al.  Cell-Wide Responses to Low-Oxygen Exposure in Desulfovibrio vulgaris Hildenborough , 2007, Journal of bacteriology.

[9]  G. Voordouw,et al.  Effect of nitrate and nitrite on sulfide production by two thermophilic, sulfate-reducing enrichments from an oil field in the North Sea , 2007, Applied Microbiology and Biotechnology.

[10]  M. Teixeira,et al.  The anaerobe Desulfovibrio desulfuricans ATCC 27774 grows at nearly atmospheric oxygen levels , 2007, FEBS letters.

[11]  M. Fournier,et al.  Oxygen defense in sulfate-reducing bacteria. , 2006, Journal of biotechnology.

[12]  G. Voordouw,et al.  Rubredoxin:Oxygen Oxidoreductase Enhances Survival of Desulfovibrio vulgaris Hildenborough under Microaerophilic Conditions , 2006, Journal of bacteriology.

[13]  Adam P. Arkin,et al.  Energetic Consequences of Nitrite Stress in Desulfovibrio vulgaris Hildenborough, Inferred from Global Transcriptional Analysis , 2006, Applied and Environmental Microbiology.

[14]  Alyssa M. Redding,et al.  Study of nitrate stress in Desulfovibrio vulgaris Hildenborough using iTRAQ proteomics. , 2006, Briefings in functional genomics & proteomics.

[15]  Weiwen Zhang,et al.  Oxidative stress and heat-shock responses in Desulfovibrio vulgaris by genome-wide transcriptomic analysis , 2006, Antonie van Leeuwenhoek.

[16]  G. Klug,et al.  Thioredoxins in bacteria: functions in oxidative stress response and regulation of thioredoxin genes , 2006, Naturwissenschaften.

[17]  J. Helmann,et al.  The PerR transcription factor senses H2O2 by metal-catalysed histidine oxidation , 2006, Nature.

[18]  Katherine H. Huang,et al.  Global Analysis of Heat Shock Response in Desulfovibrio vulgaris Hildenborough , 2006, Journal of bacteriology.

[19]  M E J Newman,et al.  Modularity and community structure in networks. , 2006, Proceedings of the National Academy of Sciences of the United States of America.

[20]  Katherine H. Huang,et al.  Temporal Transcriptomic Analysis as Desulfovibrio vulgaris Hildenborough Transitions into Stationary Phase during Electron Donor Depletion , 2005, Applied and Environmental Microbiology.

[21]  Inna Dubchak,et al.  Reconstruction of regulatory and metabolic pathways in metal-reducing δ-proteobacteria , 2004, Genome Biology.

[22]  Inna Dubchak,et al.  Reconstruction Of Regulatory And Metabolic Pathways In Metal-Reducing delta-Proteobacteria , 2004 .

[23]  M. Newman,et al.  Finding community structure in very large networks. , 2004, Physical review. E, Statistical, nonlinear, and soft matter physics.

[24]  Rekha Seshadri,et al.  The genome sequence of the anaerobic, sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough , 2004, Nature Biotechnology.

[25]  M. Hecker,et al.  Transcriptome and proteome analysis of Bacillus subtilis gene expression in response to superoxide and peroxide stress. , 2004, Microbiology.

[26]  S. Andrews,et al.  Bacterial iron homeostasis. , 2003, FEMS microbiology reviews.

[27]  D. Schriemer,et al.  Function of Oxygen Resistance Proteins in the Anaerobic, Sulfate-Reducing Bacterium Desulfovibrio vulgaris Hildenborough , 2003, Journal of bacteriology.

[28]  P. Fawcett,et al.  The Global Transcriptional Response of Bacillus subtilis to Peroxide Stress Is Coordinated by Three Transcription Factors , 2003, Journal of bacteriology.

[29]  J. Helmann,et al.  A peroxide‐induced zinc uptake system plays an important role in protection against oxidative stress in Bacillus subtilis , 2002, Molecular microbiology.

[30]  J. Helmann,et al.  Regulation of the Bacillus subtilis fur and perR Genes by PerR: Not All Members of the PerR Regulon Are Peroxide Inducible , 2002, Journal of bacteriology.

[31]  Robert A. LaRossa,et al.  DNA Microarray-Mediated Transcriptional Profiling of the Escherichia coli Response to Hydrogen Peroxide , 2001, Journal of bacteriology.

[32]  N. Shenvi,et al.  Rubrerythrin and Rubredoxin Oxidoreductase in Desulfovibrio vulgaris: a Novel Oxidative Stress Protection System , 2001 .

[33]  B Demple,et al.  Redox-operated genetic switches: the SoxR and OxyR transcription factors. , 2001, Trends in biotechnology.

[34]  J. Suflita,et al.  Signature metabolites attesting to the in situ attenuation of alkylbenzenes in anaerobic environments. , 2001, Environmental science & technology.

[35]  M. Adams,et al.  Anaerobic microbes: oxygen detoxification without superoxide dismutase. , 1999, Science.

[36]  A. Hausladen,et al.  Nitroreductase A is regulated as a member of the soxRS regulon of Escherichia coli. , 1999, Proceedings of the National Academy of Sciences of the United States of America.

[37]  J. Helmann,et al.  Bacillus subtilis contains multiple Fur homologues: identification of the iron uptake (Fur) and peroxide regulon (PerR) repressors , 1998, Molecular microbiology.

[38]  I. Zhulin,et al.  Oxygen-dependent growth of the obligate anaerobe Desulfovibrio vulgaris Hildenborough , 1997, Journal of bacteriology.

[39]  B. Britigan,et al.  Role of oxidants in microbial pathophysiology , 1997, Clinical microbiology reviews.

[40]  D. Hassett,et al.  Ferric uptake regulator (Fur) mutants of Pseudomonas aeruginosa demonstrate defective siderophore-mediated iron uptake, altered aerobic growth, and decreased superoxide dismutase and catalase activities , 1996, Journal of bacteriology.

[41]  J. Tiedje,et al.  DNA recovery from soils of diverse composition , 1996, Applied and environmental microbiology.

[42]  D. Touati,et al.  Lethal oxidative damage and mutagenesis are generated by iron in delta fur mutants of Escherichia coli: protective role of superoxide dismutase , 1995, Journal of bacteriology.

[43]  N. Fujita,et al.  Involvement of the RNA polymerase α subunit C‐terminal region in co‐operative interaction and transcriptional activation with OxyR protein , 1993, Molecular microbiology.

[44]  J. Pincemail,et al.  [Oxidative stress]. , 2007, Revue medicale de Liege.

[45]  D. Moinier,et al.  Response of the anaerobe Desulfovibrio vulgaris Hildenborough to oxidative conditions: proteome and transcript analysis. , 2006, Biochimie.

[46]  Katherine H. Huang,et al.  Salt Stress in Desulfovibrio vulgaris Hildenborough : an Integrated Genomics Approach , 2006 .

[47]  H. Cypionka,et al.  Oxygen respiration by desulfovibrio species. , 2000, Annual review of microbiology.