First Report of Carrot Infection with Phytoplasmas in Slovenia

In Slovenia, in years 2016 and 2017, carrot plants were sampled for ‘Candidatus Liberibacter solanacearum’ presence verification. All samples were negative for this pathogen. Because some samples displayed symptoms reminiscent of phytoplasma diseases they were also tested for phytoplasma infection. An association of diseased plants with phytoplasmas was confirmed with the following protocol: (i) the presence of phytoplasmas was shown with the universal quantitative PCR and (ii) the ribosomal groups of 16SrI and 16SrXII were identified by specific qunatitative PCRs. Sequence analysis of tuf, secY and stamp gene fragments indicated that the 16SrXII phytoplasmas in carrot samples belong to the ‘Candidatus Phytoplasma solani’. This research is the first report of carrot infection in phytoplasmas in Slovenia. Key words–aster yellows, ‘Candidatus Phytoplasma solani’,

[1]  M. Dermastia,et al.  Grapevine Yellows Diseases and Their Phytoplasma Agents: Biology and Detection , 2017 .

[2]  A. F. Omar Detection and molecular characterization of phytoplasmas associated with vegetable and alfalfa crops in Qassim region , 2017 .

[3]  W. Monger,et al.  First report of ' Candidatus Phytoplasma asteris' in commercial carrots in the United Kingdom , 2014 .

[4]  M. Bahar,et al.  Characterization of phytoplasmas related to 'Candidatus Phytoplasma asteris' subgroup rpI-L in Iran , 2014 .

[5]  G. Brader,et al.  An abundant ‘Candidatus Phytoplasma solani’ tuf b strain is associated with grapevine, stinging nettle and Hyalesthes obsoletus , 2014, European Journal of Plant Pathology.

[6]  X. Foissac,et al.  The stolbur phytoplasma antigenic membrane protein gene stamp is submitted to diversifying positive selection. , 2011, Gene.

[7]  J. Tomlinson,et al.  Improved fireblight diagnostics using quantitative real-time PCR detection of Erwinia amylovora chromosomal DNA , 2009 .

[8]  Yongping Duan,et al.  Multiplex real-time PCR for detection, identification and quantification of 'Candidatus Liberibacter solanacearum' in potato plants with zebra chip. , 2009, Journal of microbiological methods.

[9]  X. Foissac,et al.  GENETIC VARIABILITY OF STOLBUR PHYTOPLASMA IN ANNUAL CROP AND WILD PLANT SPECIES IN SOUTH MORAVIA , 2009 .

[10]  R. Srivastava,et al.  New plant hosts for group 16SrII, ‘Candidatus Phytoplasma aurantifolia’, in India , 2009 .

[11]  J. Jakše,et al.  Identification of a phytoplasma from the aster yellows group infecting purple coneflower ( Echinacea purpurea ) in Slovenia , 2009 .

[12]  Maja Ravnikar,et al.  Real‐time PCR detection systems for Flavescence dorée and Bois noir phytoplasmas in grapevine: comparison with conventional PCR detection and application in diagnostics , 2007 .

[13]  L. Filippin,et al.  A new TaqMan method for the identification of phytoplasmas associated with grapevine yellows by real-time PCR assay. , 2007, Journal of microbiological methods.

[14]  L. Adam,et al.  Incidence and molecular detection of yellows-type disease in carrots, associated with leafhoppers in southern Manitoba, Canada , 2004 .

[15]  A. Schulz,et al.  Distribution of phytoplasmas in infected plants as revealed by real-time PCR and bioimaging. , 2004, Molecular plant-microbe interactions : MPMI.

[16]  R. Davis,et al.  First Report of Aster Yellows-Related Subgroup I-A Phytoplasma Strains in Carrot, Phlox, Sea-Lavender, Aconitum, and Hyacinth in Lithuania. , 2001, Plant disease.

[17]  B. Schneider,et al.  Sequence and RFLP analysis of the elongation factor Tu gene used in differentiation and classification of phytoplasmas. , 1997, Microbiology.

[18]  K. Gruden,et al.  A real-time PCR detection system for the bois noir and flavescence dorée phytoplasmas and quantification of the target DNA. , 2013, Methods in molecular biology.

[19]  M. Dermastia,et al.  The most widespread phytoplasmas, vectors and measures for disease control in Slovenia , 2011 .

[20]  M. Dermastia,et al.  Development of diagnostic method for aster yellows phytoplasma detection on grapevine with real-time PCR. , 2009 .

[21]  A. Bertaccini,et al.  Phytoplasmas in carrots: disease and potential vectors in Serbia , 2008 .