Knowledge Representation and Management. From Ontology to Annotation

OBJECTIVE To summarize the best papers in the field of Knowledge Representation and Management (KRM). METHODS A comprehensive review of medical informatics literature was performed to select some of the most interesting papers of KRM published in 2014. RESULTS Four articles were selected, two focused on annotation and information retrieval using an ontology. The two others focused mainly on ontologies, one dealing with the usage of a temporal ontology in order to analyze the content of narrative document, one describing a methodology for building multilingual ontologies. CONCLUSION Semantic models began to show their efficiency, coupled with annotation tools.

[1]  K. Bretonnel Cohen,et al.  Large-scale biomedical concept recognition: an evaluation of current automatic annotators and their parameters , 2014, BMC Bioinformatics.

[2]  Yiannis Kompatsiaris,et al.  Panacea, a semantic-enabled drug recommendations discovery framework , 2014, VDOS+DO@ICBO.

[3]  Jean Charlet,et al.  Building an ontology of pulmonary diseases with natural language processing tools using textual corpora , 2007, Int. J. Medical Informatics.

[4]  Sooyoung Yoo,et al.  Semantic concept-enriched dependence model for medical information retrieval , 2014, J. Biomed. Informatics.

[5]  David Sánchez,et al.  A framework for unifying ontology-based semantic similarity measures: A study in the biomedical domain , 2014, J. Biomed. Informatics.

[6]  Arantza Illarramendi,et al.  Cross-domain targeted ontology subsets for annotation: The case of SNOMED CORE and RxNorm , 2014, J. Biomed. Informatics.

[7]  Ronald Cornet,et al.  Clustering clinical models from local electronic health records based on semantic similarity , 2015, J. Biomed. Informatics.

[8]  Jessica A. Turner,et al.  Statistical algorithms for ontology-based annotation of scientific literature , 2014, J. Biomed. Semant..

[9]  Wolfgang Marwan,et al.  EXACT2: the semantics of biomedical protocols , 2014, BMC Bioinformatics.

[10]  Cui Tao,et al.  A use case study on late stent thrombosis for ontology-based temporal reasoning and analysis , 2014, Journal of Biomedical Semantics.

[11]  Nicholas R. Hardiker,et al.  Inter-terminology mapping of nursing problems , 2014, J. Biomed. Informatics.

[12]  Jurgen Fripp,et al.  Automatic model‐based semantic registration of multimodal MRI knee data , 2015, Journal of magnetic resonance imaging : JMRI.

[13]  Olivier Palombi,et al.  My Corporis Fabrica: an ontology-based tool for reasoning and querying on complex anatomical models , 2014, Journal of Biomedical Semantics.

[14]  V Maojo,et al.  Toward a View-oriented Approach for Aligning RDF-based Biomedical Repositories , 2014, Methods of Information in Medicine.

[15]  Fleur Mougin,et al.  Reuse of termino-ontological resources and text corpora for building a multilingual domain ontology: An application to Alzheimer's disease , 2014, J. Biomed. Informatics.

[16]  Jessica A. Turner,et al.  Neuroanatomical domain of the foundational model of anatomy ontology , 2014, J. Biomed. Semant..