The Chloroplastic Protein THF1 Interacts with the Coiled-Coil Domain of the Disease Resistance Protein N′ and Regulates Light-Dependent Cell Death1[OPEN]

A chloroplastic protein inhibits defense-induced cell death and is destabilized by activation of a disease resistance protein. One branch of plant immunity is mediated through nucleotide-binding/Leu-rich repeat (NB-LRR) family proteins that recognize specific effectors encoded by pathogens. Members of the I2-like family constitute a well-conserved subgroup of NB-LRRs from Solanaceae possessing a coiled-coil (CC) domain at their N termini. We show here that the CC domains of several I2-like proteins are able to induce a hypersensitive response (HR), a form of programmed cell death associated with disease resistance. Using yeast two-hybrid screens, we identified the chloroplastic protein Thylakoid Formation1 (THF1) as an interacting partner for several I2-like CC domains. Co-immunoprecipitations and bimolecular fluorescence complementation assays confirmed that THF1 and I2-like CC domains interact in planta and that these interactions take place in the cytosol. Several HR-inducing I2-like CC domains have a negative effect on the accumulation of THF1, suggesting that the latter is destabilized by active CC domains. To confirm this model, we investigated N′, which recognizes the coat protein of most Tobamoviruses, as a prototypical member of the I2-like family. Transient expression and gene silencing data indicated that THF1 functions as a negative regulator of cell death and that activation of full-length N′ results in the destabilization of THF1. Consistent with the known function of THF1 in maintaining chloroplast homeostasis, we show that the HR induced by N′ is light-dependent. Together, our results define, to our knowledge, novel molecular mechanisms linking light and chloroplasts to the induction of cell death by a subgroup of NB-LRR proteins.

[1]  B. Fritig,et al.  Scopoletin expression in elicitor-treated and tobacco mosaic virus-infected tobacco plants. , 2002, Physiologia plantarum.

[2]  M. Azhar,et al.  Virus resistance induced by NB-LRR proteins involves Argonaute4-dependent translational control. , 2009, The Plant journal : for cell and molecular biology.

[3]  C. Mullineaux,et al.  A Critical Role for the Var2 FtsH Homologue of Arabidopsis thaliana in the Photosystem II Repair Cycle in Vivo * , 2002, The Journal of Biological Chemistry.

[4]  K. V. van Wijk,et al.  The Oligomeric Stromal Proteome of Arabidopsis thaliana Chloroplasts *S , 2006, Molecular & Cellular Proteomics.

[5]  L. Ciuffetti,et al.  Intracellular expression of a host-selective toxin, ToxA, in diverse plants phenocopies silencing of a ToxA-interacting protein, ToxABP1. , 2010, The New phytologist.

[6]  K. Murase,et al.  Two Distinct Forms of M-Locus Protein Kinase Localize to the Plasma Membrane and Interact Directly with S-Locus Receptor Kinase to Transduce Self-Incompatibility Signaling in Brassica rapa[W] , 2007, The Plant Cell Online.

[7]  M. Rep,et al.  The effector protein Avr2 of the xylem-colonizing fungus Fusarium oxysporum activates the tomato resistance protein I-2 intracellularly. , 2009, The Plant journal : for cell and molecular biology.

[8]  M. Banfield,et al.  Single amino acid mutations in the potato immune receptor R3a expand response to Phytophthora effectors. , 2014, Molecular plant-microbe interactions : MPMI.

[9]  D. Klessig,et al.  Light-dependent hypersensitive response and resistance signaling against Turnip Crinkle Virus in Arabidopsis. , 2006, The Plant journal : for cell and molecular biology.

[10]  Tieliu Shi,et al.  Proteomic evidence for genetic epistasis: ClpR4 mutations switch leaf variegation to virescence in Arabidopsis. , 2013, The Plant journal : for cell and molecular biology.

[11]  R. Visser,et al.  Comparative genomics enabled the isolation of the R3a late blight resistance gene in potato. , 2005, The Plant journal : for cell and molecular biology.

[12]  Lingang Zhang,et al.  Arabidopsis thylakoid formation 1 is a critical regulator for dynamics of PSII-LHCII complexes in leaf senescence and excess light. , 2013, Molecular plant.

[13]  Sándor Lenk,et al.  Multicolor fluorescence imaging for early detection of the hypersensitive reaction to tobacco mosaic virus. , 2007, Journal of plant physiology.

[14]  L. Ciuffetti,et al.  Ptr ToxA interacts with a chloroplast-localized protein. , 2007, Molecular plant-microbe interactions : MPMI.

[15]  Peter Uetz,et al.  Improving the yeast two-hybrid system with permutated fusions proteins: the Varicella Zoster Virus interactome , 2010, Proteome Science.

[16]  V. Paakkarinen,et al.  Depletion of the photosystem II core complex in mature tobacco leaves infected by the flavum strain of tobacco mosaic virus. , 2003, Molecular plant-microbe interactions : MPMI.

[17]  Marius A. Micluţa,et al.  Coiled-coil domain-dependent homodimerization of intracellular barley immune receptors defines a minimal functional module for triggering cell death. , 2011, Cell host & microbe.

[18]  K. Fukui,et al.  Reduced Levels of Chloroplast FtsH Protein in Tobacco Mosaic Virus–Infected Tobacco Leaves Accelerate the Hypersensitive Reaction , 2000, Plant Cell.

[19]  C. D. de Koster,et al.  The mixed xylem sap proteome of Fusarium oxysporum-infected tomato plants. , 2007, Molecular plant pathology.

[20]  D. Zamir,et al.  Comparative genetics of nucleotide binding site-leucine rich repeat resistance gene homologues in the genomes of two dicotyledons: tomato and arabidopsis. , 2000, Genetics.

[21]  Tsuyoshi Nakagawa,et al.  The Plastid Protein THYLAKOID FORMATION1 and the Plasma Membrane G-Protein GPA1 Interact in a Novel Sugar-Signaling Mechanism in Arabidopsis[W] , 2006, The Plant Cell Online.

[22]  E. Welsh,et al.  Psb29, a Conserved 22-kD Protein, Functions in the Biogenesis of Photosystem II Complexes in Synechocystis and Arabidopsisw⃞ , 2005, The Plant Cell Online.

[23]  B. Kobe,et al.  Structural and functional analysis of a plant resistance protein TIR domain reveals interfaces for self-association, signaling, and autoregulation. , 2011, Cell host & microbe.

[24]  D. Guttman,et al.  The Arabidopsis ZED1 pseudokinase is required for ZAR1-mediated immunity induced by the Pseudomonas syringae type III effector HopZ1a , 2013, Proceedings of the National Academy of Sciences.

[25]  R. Beachy,et al.  Selective inhibition of photosystem II in spinach by tobacco mosaic virus: An effect of the viral coat protein , 1989, FEBS Letters.

[26]  H. Hirt,et al.  Reactive oxygen species: metabolism, oxidative stress, and signal transduction. , 2004, Annual review of plant biology.

[27]  Jonathan D. G. Jones,et al.  The Arabidopsis thaliana TIR-NB-LRR R-protein, RPP1A; protein localization and constitutive activation of defence by truncated alleles in tobacco and Arabidopsis. , 2006, The Plant journal : for cell and molecular biology.

[28]  D. Baulcombe,et al.  Interaction between domains of a plant NBS–LRR protein in disease resistance‐related cell death , 2002, The EMBO journal.

[29]  R. Beachy,et al.  Reduced Photosystem II Activity and Accumulation of Viral Coat Protein in Chloroplasts of Leaves Infected with Tobacco Mosaic Virus. , 1989, Plant physiology.

[30]  J. Mes,et al.  Dissection of the Fusarium I2 Gene Cluster in Tomato Reveals Six Homologs and One Active Gene Copy , 1998, Plant Cell.

[31]  K. Shirasu,et al.  RanGAP2 Mediates Nucleocytoplasmic Partitioning of the NB-LRR Immune Receptor Rx in the Solanaceae, Thereby Dictating Rx Function[W][OA] , 2010, Plant Cell.

[32]  F. Takken,et al.  How to build a pathogen detector: structural basis of NB-LRR function. , 2012, Current opinion in plant biology.

[33]  Y. Hikichi,et al.  Genetic basis for the hierarchical interaction between Tobamovirus spp. and L resistance gene alleles from different pepper species. , 2011, Molecular plant-microbe interactions : MPMI.

[34]  Peter Jeschke,et al.  Pivoting the Plant Immune System from Dissection to Deployment , 2013 .

[35]  P. Moffett,et al.  NB-LRRs work a "bait and switch" on pathogens. , 2009, Trends in plant science.

[36]  R. Visser,et al.  The R3 resistance to Phytophthora infestans in potato is conferred by two closely linked R genes with distinct specificities. , 2004, Molecular plant-microbe interactions : MPMI.

[37]  P. Moffett,et al.  Cell death mediated by the N-terminal domains of a unique and highly conserved class of NB-LRR protein. , 2011, Molecular plant-microbe interactions : MPMI.

[38]  Amy E. Keating,et al.  Paircoil2: improved prediction of coiled coils from sequence , 2006, Bioinform..

[39]  Alan M. Jones,et al.  Deletion of the Chloroplast-Localized Thylakoid Formation1 Gene Product in Arabidopsis Leads to Deficient Thylakoid Formation and Variegated Leaves1 , 2004, Plant Physiology.

[40]  S. Schornack,et al.  Host Protein BSL1 Associates with Phytophthora infestans RXLR Effector AVR2 and the Solanum demissum Immune Receptor R2 to Mediate Disease Resistance[C][W] , 2012, Plant Cell.

[41]  R. Beachy,et al.  Association of TMV coat protein with chloroplast membranes in virus-infected leaves , 1986, Plant Molecular Biology.

[42]  S. Chisholm,et al.  Host-Microbe Interactions: Shaping the Evolution of the Plant Immune Response , 2022 .

[43]  John P. Rathjen,et al.  Plant immunity: towards an integrated view of plant–pathogen interactions , 2010, Nature Reviews Genetics.

[44]  Lingang Zhang,et al.  Activation of the heterotrimeric G protein alpha-subunit GPA1 suppresses the ftsh-mediated inhibition of chloroplast development in Arabidopsis. , 2009, The Plant journal : for cell and molecular biology.

[45]  J. Dangl,et al.  Molecular and Functional Analyses of a Maize Autoactive NB-LRR Protein Identify Precise Structural Requirements for Activity , 2015, PLoS pathogens.

[46]  D. Baulcombe,et al.  Technical Advance: Tobacco rattle virus as a vector for analysis of gene function by silencing , 2008 .

[47]  P. Moffett Fragment complementation and co-immunoprecipitation assays for understanding R protein structure and function. , 2011, Methods in molecular biology.

[48]  J. Parker,et al.  Arabidopsis EDS1 Connects Pathogen Effector Recognition to Cell Compartment–Specific Immune Responses , 2011, Science.

[49]  J. Manners,et al.  Tobacco transgenic for the flax rust resistance gene L expresses allele-specific activation of defense responses. , 2004, Molecular plant-microbe interactions : MPMI.

[50]  Leighton Pritchard,et al.  Identification and localisation of the NB-LRR gene family within the potato genome , 2012, BMC Genomics.

[51]  S. Dinesh-Kumar,et al.  Chloroplastic Protein NRIP1 Mediates Innate Immune Receptor Recognition of a Viral Effector , 2008, Cell.

[52]  G. Coaker,et al.  Plant NB-LRR signaling: upstreams and downstreams. , 2011, Current opinion in plant biology.

[53]  Bin Wang,et al.  Long-Term Evolution of Nucleotide-Binding Site-Leucine-Rich Repeat Genes: Understanding Gained from and beyond the Legume Family1[C][W] , 2014, Plant Physiology.

[54]  P. Epple,et al.  Programmed cell death in the plant immune system , 2011, Cell Death and Differentiation.

[55]  J. Chai,et al.  Structural Basis for the Interaction between the Potato Virus X Resistance Protein (Rx) and Its Cofactor Ran GTPase-activating Protein 2 (RanGAP2)* , 2013, The Journal of Biological Chemistry.

[56]  B. Berger,et al.  Multicoil2: Predicting Coiled Coils and Their Oligomerization States from Sequence in the Twilight Zone , 2011, PloS one.

[57]  K. Mysore,et al.  A Virus-Induced Gene Silencing Screen Identifies a Role for Thylakoid Formation1 in Pseudomonas syringae pv tomato Symptom Development in Tomato and Arabidopsis1[W][OA] , 2009, Plant Physiology.

[58]  James N Culver,et al.  Tobacco mosaic virus assembly and disassembly: determinants in pathogenicity and resistance. , 2002, Annual review of phytopathology.

[59]  P. Moffett,et al.  A RanGAP protein physically interacts with the NB-LRR protein Rx, and is required for Rx-mediated viral resistance. , 2007, The Plant journal : for cell and molecular biology.

[60]  J. A. Carroll,et al.  Proteomic analysis of a highly active photosystem II preparation from the cyanobacterium Synechocystis sp. PCC 6803 reveals the presence of novel polypeptides. , 2002, Biochemistry.

[61]  Christian G Elowsky,et al.  Distinct Pseudomonas type-III effectors use a cleavable transit peptide to target chloroplasts. , 2014, The Plant journal : for cell and molecular biology.

[62]  G. Heijne,et al.  ChloroP, a neural network‐based method for predicting chloroplast transit peptides and their cleavage sites , 1999, Protein science : a publication of the Protein Society.

[63]  P. Boevink,et al.  Relocalization of Late Blight Resistance Protein R3a to Endosomal Compartments Is Associated with Effector Recognition and Required for the Immune Response[W] , 2012, Plant Cell.

[64]  Weidong Qian,et al.  Characterization of a specific interaction between IP-L, a tobacco protein localized in the thylakoid membranes, and Tomato mosaic virus coat protein. , 2008, Biochemical and biophysical research communications.

[65]  A. Petrescu,et al.  Nucleocytoplasmic Distribution Is Required for Activation of Resistance by the Potato NB-LRR Receptor Rx1 and Is Balanced by Its Functional Domains[W] , 2010, Plant Cell.

[66]  L. Ciuffetti,et al.  A host-selective toxin of Pyrenophora tritici-repentis, Ptr ToxA, induces photosystem changes and reactive oxygen species accumulation in sensitive wheat. , 2009, Molecular plant-microbe interactions : MPMI.

[67]  W. Sakamoto,et al.  The Variegated Mutants Lacking Chloroplastic FtsHs Are Defective in D1 Degradation and Accumulate Reactive Oxygen Species1[W][OA] , 2009, Plant Physiology.

[68]  J. Ohnishi,et al.  Two Amino Acid Substitutions in the Coat Protein of Pepper mild mottle virus Are Responsible for Overcoming the L(4) Gene-Mediated Resistance in Capsicum spp. , 2007, Phytopathology.

[69]  J. Hille,et al.  Cloning and characterization of the durable tomato mosaic virus resistance gene Tm-22 from Lycopersicon esculentum , 2003, Plant Molecular Biology.

[70]  A. Pfitzner,et al.  Tm-2(2) resistance in tomato requires recognition of the carboxy terminus of the movement protein of tomato mosaic virus. , 1998, Molecular plant-microbe interactions : MPMI.

[71]  A. Oppenheim,et al.  The Thylakoid FtsH Protease Plays a Role in the Light-Induced Turnover of the Photosystem II D1 Protein , 2000, Plant Cell.

[72]  D. Baulcombe,et al.  NRG1, a CC-NB-LRR Protein, together with N, a TIR-NB-LRR Protein, Mediates Resistance against Tobacco Mosaic Virus , 2005, Current Biology.

[73]  P. Schulze-Lefert,et al.  Structure-Function Analysis of Barley NLR Immune Receptor MLA10 Reveals Its Cell Compartment Specific Activity in Cell Death and Disease Resistance , 2012, PLoS pathogens.

[74]  Jonathan D. G. Jones,et al.  The TIR domain of TIR-NB-LRR resistance proteins is a signaling domain involved in cell death induction. , 2009, Molecular plant-microbe interactions : MPMI.

[75]  G. Johal,et al.  Characterization of temperature and light effects on the defense response phenotypes associated with the maize Rp1-D21 autoactive resistance gene , 2013, BMC Plant Biology.

[76]  T. Saito,et al.  Mutational analysis of the coat protein gene of tobacco mosaic virus in relation to hypersensitive response in tobacco plants with the N' gene. , 1989, Virology.

[77]  B. Staskawicz,et al.  Activation of an Arabidopsis Resistance Protein Is Specified by the in Planta Association of Its Leucine-Rich Repeat Domain with the Cognate Oomycete Effector[W][OA] , 2010, Plant Cell.

[78]  J. Culver,et al.  Tobacco mosaic virus coat protein: an elicitor of the hypersensitive reaction but not required for the development of mosaic symptoms in Nicotiana sylvestris. , 1989, Virology.

[79]  S. Tanksley,et al.  The I2C family from the wilt disease resistance locus I2 belongs to the nucleotide binding, leucine-rich repeat superfamily of plant resistance genes. , 1997, The Plant cell.

[80]  K. V. van Wijk,et al.  New Functions of the Thylakoid Membrane Proteome of Arabidopsis thaliana Revealed by a Simple, Fast, and Versatile Fractionation Strategy* , 2004, Journal of Biological Chemistry.

[81]  P. Moffett,et al.  The Coiled-Coil and Nucleotide Binding Domains of the Potato Rx Disease Resistance Protein Function in Pathogen Recognition and Signaling[W][OA] , 2008, The Plant Cell Online.

[82]  B. Qiu,et al.  Identification of a tobacco protein interacting with tomato mosaic virus coat protein and facilitating long-distance movement of virus , 2005, Archives of Virology.

[83]  T. Saito,et al.  Coat protein gene sequence of tobacco mosaic virus encodes a host response determinant. , 1987, Proceedings of the National Academy of Sciences of the United States of America.

[84]  H. Saitoh,et al.  Functional differentiation in the leucine-rich repeat domains of closely related plant virus-resistance proteins that recognize common avr proteins. , 2012, Molecular plant-microbe interactions : MPMI.

[85]  C. Funk,et al.  FtsH proteases located in the plant chloroplast. , 2012, Physiologia plantarum.

[86]  J. Dangl,et al.  Expanded functions for a family of plant intracellular immune receptors beyond specific recognition of pathogen effectors , 2011, Proceedings of the National Academy of Sciences.

[87]  G. May,et al.  Pervasive purifying selection characterizes the evolution of I2 homologs. , 2006, Molecular plant-microbe interactions : MPMI.

[88]  Yuichiro Watanabe,et al.  Construction of a Tobamovirus Vector That Can Systemically Spread and Express Foreign Gene Products in Solanaceous Plants. , 2003 .

[89]  W. Sakamoto,et al.  NYC4, the rice ortholog of Arabidopsis THF1, is involved in the degradation of chlorophyll - protein complexes during leaf senescence. , 2013, The Plant journal : for cell and molecular biology.