Allele-specific binding of ZFP57 in the epigenetic regulation of imprinted and non-imprinted monoallelic expression
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Felix Krueger | Kirsten R. McEwen | R. Pedersen | A. Ferguson-Smith | F. Krueger | K. Yamazawa | Bowen Sun | Anne C. Ferguson-Smith | Ruslan Strogantsev | Kazuki Yamazawa | Hui Shi | Poppy Gould | Megan Goldman-Roberts | Kirsten McEwen | Bowen Sun | Roger Pedersen | R. Strogantsev | Poppy A Gould | Hui Shi | Megan Goldman-Roberts | Felix Krueger
[1] Jacek Majewski,et al. The study of eQTL variations by RNA-seq: from SNPs to phenotypes. , 2011, Trends in genetics : TIG.
[2] Austin G Smith,et al. Conversion of embryonic stem cells into neuroectodermal precursors in adherent monoculture , 2003, Nature Biotechnology.
[3] S. Andrews,et al. Dynamic CpG island methylation landscape in oocytes and preimplantation embryos , 2011, Nature Genetics.
[4] A. Ferguson-Smith,et al. Proteins involved in establishment and maintenance of imprinted methylation marks. , 2012, Briefings in functional genomics.
[5] Michael Rehli,et al. Allele-specific DNA methylation in mouse strains is mainly determined by cis-acting sequences. , 2009, Genome research.
[6] T. Mikkelsen,et al. Genome-wide maps of chromatin state in pluripotent and lineage-committed cells , 2007, Nature.
[7] Xin Wang,et al. Human and mouse ZFP57 proteins are functionally interchangeable in maintaining genomic imprinting at multiple imprinted regions in mouse ES cells , 2013, Epigenetics.
[8] E. Wagner,et al. Imprinted expression of the Igf2r gene depends on an intronic CpG island , 1997, Nature.
[9] K. Buiting. Prader–Willi syndrome and Angelman syndrome , 2010, American journal of medical genetics. Part C, Seminars in medical genetics.
[10] H. Soejima,et al. Methylation dynamics of IG-DMR and Gtl2-DMR during murine embryonic and placental development. , 2011, Genomics.
[11] Zachary D. Smith,et al. A unique regulatory phase of DNA methylation in the early mammalian embryo , 2012, Nature.
[12] Helen M. Rowe,et al. KAP1 controls endogenous retroviruses in embryonic stem cells , 2010, Nature.
[13] P. Soloway,et al. Regional loss of imprinting and growth deficiency in mice with a targeted deletion of KvDMR1 , 2002, Nature Genetics.
[14] P. Glenister,et al. Identification of an imprinting control region affecting the expression of all transcripts in the Gnas cluster , 2006, Nature Genetics.
[15] T. Mikkelsen,et al. Genome-scale DNA methylation maps of pluripotent and differentiated cells , 2008, Nature.
[16] H. Sasaki,et al. Genomic imprinting and its relevance to congenital disease, infertility, molar pregnancy and induced pluripotent stem cell , 2012, Journal of Human Genetics.
[17] Satoshi Tanaka,et al. PGC7/Stella protects against DNA demethylation in early embryogenesis , 2007, Nature Cell Biology.
[18] Damian Smedley,et al. BioMart Central Portal: an open database network for the biological community , 2011, Database J. Biol. Databases Curation.
[19] D. Solter,et al. Trim28 Is Required for Epigenetic Stability During Mouse Oocyte to Embryo Transition , 2012, Science.
[20] U. Francke,et al. Molecular definition of the chromosome 7 deletion in Williams syndrome and parent-of-origin effects on growth. , 1996, American journal of human genetics.
[21] B. Doble,et al. The ground state of embryonic stem cell self-renewal , 2008, Nature.
[22] T. Kono,et al. Imprinted DNA methylation reprogramming during early mouse embryogenesis at the Gpr1‐Zdbf2 locus is linked to long cis‐intergenic transcription , 2012, FEBS letters.
[23] Stephen R Quake,et al. Single-Cell DNA-Methylation Analysis Reveals Epigenetic Chimerism in Preimplantation Embryos , 2013, Science.
[24] D. Bourc’his,et al. The Gpr1/Zdbf2 locus provides new paradigms for transient and dynamic genomic imprinting in mammals , 2014, Genes & development.
[25] P. Leder,et al. A maternal-zygotic effect gene, Zfp57, maintains both maternal and paternal imprints. , 2008, Developmental cell.
[26] C. Morris,et al. A novel human gene FKBP6 is deleted in Williams syndrome. , 1998, Genomics.
[27] A. Ferguson-Smith,et al. Genomic imprinting: the emergence of an epigenetic paradigm , 2011, Nature Reviews Genetics.
[28] G. Giglia-Mari,et al. DNA damage response. , 2011, Cold Spring Harbor perspectives in biology.
[29] I M Morison,et al. The imprinted gene and parent-of-origin effect database , 2001, Nucleic Acids Res..
[30] A. Hattersley,et al. Hypomethylation of multiple imprinted loci in individuals with transient neonatal diabetes is associated with mutations in ZFP57 , 2008, Nature Genetics.
[31] S. Luo,et al. High-Resolution Analysis of Parent-of-Origin Allelic Expression in the Mouse Brain , 2010, Science.
[32] A. Ferguson-Smith,et al. Imprinted Gene Dosage Is Critical for the Transition to Independent Life , 2012, Cell metabolism.
[33] N. Yaegashi,et al. A tripartite paternally methylated region within the Gpr1-Zdbf2 imprinted domain on mouse chromosome 1 identified by meDIP-on-chip , 2010, Nucleic acids research.
[34] Austin G Smith,et al. Niche-Independent Symmetrical Self-Renewal of a Mammalian Tissue Stem Cell , 2005, PLoS biology.
[35] A. Ferguson-Smith,et al. Uniparental disomy and human disease: An overview , 2010, American journal of medical genetics. Part C, Seminars in medical genetics.
[36] R. Shoemaker,et al. Allele-specific methylation is prevalent and is contributed by CpG-SNPs in the human genome. , 2010, Genome research.
[37] T. Rauch,et al. Chromosome-Wide Analysis of Parental Allele-Specific Chromatin and DNA Methylation , 2011, Molecular and Cellular Biology.
[38] Paul Flicek,et al. Extensive compensatory cis-trans regulation in the evolution of mouse gene expression , 2012, Genome research.
[39] Suzanne B. Cassidy,et al. Prader-Willi Syndrome , 2005 .
[40] Kazuhiro Kikuchi,et al. Essential Role of Fkbp6 in Male Fertility and Homologous Chromosome Pairing in Meiosis , 2003, Science.
[41] M. Kyba,et al. Zinc Finger Protein ZFP57 Requires Its Co-factor to Recruit DNA Methyltransferases and Maintains DNA Methylation Imprint in Embryonic Stem Cells via Its Transcriptional Repression Domain* , 2011, The Journal of Biological Chemistry.
[42] R. Feil,et al. Genomic imprinting and human disease. , 2010, Essays in biochemistry.
[43] P. M. Lynch,et al. Isolation of liver and muscle polyribosomes in high yield after cell disruption by nitrogen cavitation , 1968, FEBS letters.
[44] S. Andrews,et al. Dynamic stage-specific changes in imprinted differentially methylated regions during early mammalian development and prevalence of non-CpG methylation in oocytes , 2011, Development.
[45] T. Ogata,et al. Identification of the mouse paternally expressed imprinted gene Zdbf2 on chromosome 1 and its imprinted human homolog ZDBF2 on chromosome 2. , 2009, Genomics.
[46] V. Rakyan,et al. Protection against De Novo Methylation Is Instrumental in Maintaining Parent-of-Origin Methylation Inherited from the Gametes , 2012, Molecular cell.
[47] Yutaka Suzuki,et al. Contribution of Intragenic DNA Methylation in Mouse Gametic DNA Methylomes to Establish Oocyte-Specific Heritable Marks , 2012, PLoS genetics.
[48] Tomas Babak,et al. Critical Evaluation of Imprinted Gene Expression by RNA–Seq: A New Perspective , 2012, PLoS genetics.
[49] Xiaodong Cheng,et al. An atomic model of Zfp57 recognition of CpG methylation within a specific DNA sequence. , 2012, Genes & development.
[50] Kirsten R. McEwen,et al. Distinguishing epigenetic marks of developmental and imprinting regulation , 2010, Epigenetics & Chromatin.
[51] Yoko Ito,et al. Status of Genomic Imprinting in Epigenetically Distinct Pluripotent Stem Cells , 2012, Stem cells.
[52] A. Ferguson-Smith,et al. Mammalian genomic imprinting. , 2011, Cold Spring Harbor perspectives in biology.
[53] C. Morris,et al. A novel human gene, WSTF, is deleted in Williams syndrome. , 1998, Genomics.
[54] S. Leff,et al. A mouse model for Prader-Willi syndrome imprinting-centre mutations , 1998, Nature Genetics.
[55] M. Bartolomei,et al. Deletion of the H19 differentially methylated domain results in loss of imprinted expression of H19 and Igf2. , 1998, Genes & development.
[56] Thomas M. Keane,et al. Mouse genomic variation and its effect on phenotypes and gene regulation , 2011, Nature.
[57] S Rozen,et al. Primer3 on the WWW for general users and for biologist programmers. , 2000, Methods in molecular biology.
[58] R. Sachidanandam,et al. A role for Fkbp6 and the chaperone machinery in piRNA amplification and transposon silencing. , 2012, Molecular cell.
[59] D. Trono,et al. In Embryonic Stem Cells, ZFP57/KAP1 Recognize a Methylated Hexanucleotide to Affect Chromatin and DNA Methylation of Imprinting Control Regions , 2011, Molecular cell.
[60] B. Ren,et al. Base-Resolution Analyses of Sequence and Parent-of-Origin Dependent DNA Methylation in the Mouse Genome , 2012, Cell.
[61] Helen M. Rowe,et al. TRIM28 repression of retrotransposon-based enhancers is necessary to preserve transcriptional dynamics in embryonic stem cells , 2013, Genome research.
[62] R. Plomin,et al. Allelic skewing of DNA methylation is widespread across the genome. , 2010, American journal of human genetics.
[63] Henriette O'Geen,et al. Genome-Wide Analysis of KAP1 Binding Suggests Autoregulation of KRAB-ZNFs , 2007, PLoS genetics.
[64] Hiroyuki Sasaki,et al. Genomic imprinting in mammals: its life cycle, molecular mechanisms and reprogramming , 2011, Cell Research.
[65] J. Lingner,et al. AUF1/HnRNP D RNA binding protein functions in telomere maintenance. , 2012, Molecular cell.
[66] G. Felsenfeld,et al. Transitions in histone acetylation reveal boundaries of three separately regulated neighboring loci , 2001, The EMBO journal.
[67] K. Hata,et al. Histone methylation is mechanistically linked to DNA methylation at imprinting control regions in mammals. , 2009, Human molecular genetics.