The Tasmanian devil microbiome—implications for conservation and management

[1]  B. Tokarz-Deptuła,et al.  The human microbiome , 2017 .

[2]  M. Noval Rivas,et al.  The microbiome in asthma , 2016, Current opinion in pediatrics.

[3]  A. Roca,et al.  Variation in koala microbiomes within and between individuals: effect of body region and captivity status , 2015, Scientific Reports.

[4]  S. Salminen,et al.  Microbiota and probiotics in canine and feline welfare , 2015, Anaerobe.

[5]  N. Blom,et al.  The microbiome of New World vultures , 2014, Nature Communications.

[6]  J. Weese,et al.  Characterization of the oral microbiota of healthy cats using next-generation sequencing. , 2014, Veterinary journal.

[7]  G. Trinchieri,et al.  Gut microbiome and anticancer immune response: really hot Sh*t! , 2014, Cell Death and Differentiation.

[8]  Y. Li,et al.  Characterization of the Gut Microbiota in the Red Panda (Ailurus fulgens) , 2014, PloS one.

[9]  S. Dowd,et al.  The Skin Microbiome in Healthy and Allergic Dogs , 2014, PloS one.

[10]  P. Timms,et al.  Investigation of the koala (Phascolarctos cinereus) hindgut microbiome via 16S pyrosequencing. , 2013, Veterinary microbiology.

[11]  L. Desbonnet,et al.  The microbiome: stress, health and disease , 2013, Mammalian Genome.

[12]  P. Bork,et al.  Richness of human gut microbiome correlates with metabolic markers , 2013, Nature.

[13]  Jesse R. Zaneveld,et al.  Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences , 2013, Nature Biotechnology.

[14]  Hensin Tsao,et al.  The skin microbiome: current perspectives and future challenges. , 2013, Journal of the American Academy of Dermatology.

[15]  K. Nelson,et al.  Habitat degradation impacts black howler monkey (Alouatta pigra) gastrointestinal microbiomes , 2013, The ISME Journal.

[16]  Tom H. Pringle,et al.  Erratum: Genetic diversity and population structure of the endangered marsupial Sarcophilus harrisii (Tasmanian devil) (Proceedings of the National Academy of Sciences of the United States of America (2011) 108, 30 (12348-12353) DOI: 10.1073/pnas.1102838108) , 2012 .

[17]  B. Henrissat,et al.  Effects of dietary fiber on the feline gastrointestinal metagenome. , 2012, Journal of proteome research.

[18]  T. Dinan,et al.  Regulation of the stress response by the gut microbiota: Implications for psychoneuroendocrinology , 2012, Psychoneuroendocrinology.

[19]  D. Sinderen,et al.  Gut microbiota composition correlates with diet and health in the elderly , 2012, Nature.

[20]  G. Suen,et al.  The genomic basis for the evolution of a novel form of cellular reproduction in the bacterium Epulopiscium , 2012, BMC Genomics.

[21]  J. White,et al.  Pyrosequencing of Bacterial Symbionts within Axinella corrugata Sponges: Diversity and Seasonal Variability , 2012, PloS one.

[22]  A. Macpherson,et al.  Interactions Between the Microbiota and the Immune System , 2012, Science.

[23]  R. Isaacson,et al.  The intestinal microbiome of the pig , 2012, Animal Health Research Reviews.

[24]  F. Dewhirst,et al.  The Canine Oral Microbiome , 2012, PloS one.

[25]  K. Honda,et al.  The microbiome in infectious disease and inflammation. , 2012, Annual review of immunology.

[26]  J. Clemente,et al.  The Impact of the Gut Microbiota on Human Health: An Integrative View , 2012, Cell.

[27]  M. Blaser,et al.  The human microbiome: at the interface of health and disease , 2012, Nature Reviews Genetics.

[28]  Carolyn Tregidgo,et al.  Genome Sequencing and Analysis of the Tasmanian Devil and Its Transmissible Cancer , 2012, Cell.

[29]  G. Andersen,et al.  Comparison of the Fecal Microbiota in Feral and Domestic Goats , 2011, Genes.

[30]  Cassandra Willyard.  Microbiome: Gut reaction , 2011, Nature.

[31]  Qi Wu,et al.  Evidence of cellulose metabolism by the giant panda gut microbiome , 2011, Proceedings of the National Academy of Sciences.

[32]  B. Cocks,et al.  Ancient Antimicrobial Peptides Kill Antibiotic-Resistant Pathogens: Australian Mammals Provide New Options , 2011, PloS one.

[33]  Jose U. Scher,et al.  The microbiome and rheumatoid arthritis , 2011, Nature Reviews Rheumatology.

[34]  Tom H. Pringle,et al.  Genetic diversity and population structure of the endangered marsupial Sarcophilus harrisii (Tasmanian devil) , 2011, Proceedings of the National Academy of Sciences.

[35]  J. Izard,et al.  The Human Oral Microbiome , 2010, Journal of bacteriology.

[36]  C. Sangster,et al.  Pulmonary mycobacteriosis caused by Mycobacterium intracellulare in a Tasmanian devil (Sarcophilus harrisii). , 2010, Australian veterinary journal.

[37]  William A. Walters,et al.  QIIME allows analysis of high-throughput community sequencing data , 2010, Nature Methods.

[38]  B. White,et al.  Phylogenetic Characterization of Fecal Microbial Communities of Dogs Fed Diets with or without Supplemental Dietary Fiber Using 454 Pyrosequencing , 2010, PloS one.

[39]  Christophe Caron,et al.  Towards the human intestinal microbiota phylogenetic core. , 2009, Environmental microbiology.

[40]  S. Mazmanian,et al.  The gut microbiota shapes intestinal immune responses during health and disease , 2009, Nature Reviews Immunology.

[41]  K. Nelson,et al.  Gene-centric metagenomics of the fiber-adherent bovine rumen microbiome reveals forage specific glycoside hydrolases , 2009, Proceedings of the National Academy of Sciences.

[42]  R. Ley,et al.  Innate immunity and intestinal microbiota in the development of Type 1 diabetes , 2008, Nature.

[43]  R. Knight,et al.  Evolution of Mammals and Their Gut Microbes , 2008, Science.

[44]  M. Hattori,et al.  Determination of the Genome Sequence of Porphyromonas gingivalis Strain ATCC 33277 and Genomic Comparison with Strain W83 Revealed Extensive Genome Rearrangements in P. gingivalis , 2008, DNA research : an international journal for rapid publication of reports on genes and genomes.

[45]  D. Antonopoulos,et al.  Decreased diversity of the fecal Microbiome in recurrent Clostridium difficile-associated diarrhea. , 2008, The Journal of infectious diseases.

[46]  H. Sugita,et al.  Novel ecological niche of Cetobacterium somerae, an anaerobic bacterium in the intestinal tracts of freshwater fish , 2007, Letters in applied microbiology.

[47]  R. Knight,et al.  The Human Microbiome Project , 2007, Nature.

[48]  N. Pace,et al.  Molecular-phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases , 2007, Proceedings of the National Academy of Sciences.

[49]  E. Mardis,et al.  An obesity-associated gut microbiome with increased capacity for energy harvest , 2006, Nature.

[50]  S. Bouma.  Tasmanian Devil: A Unique and Threatened Animal [Book Review] , 2006 .

[51]  Clare E. Hawkins,et al.  Emerging disease and population decline of an island endemic, the Tasmanian devil Sarcophilus harrisii , 2006 .

[52]  Menna E. Jones,et al.  Genetic diversity and population structure of Tasmanian devils, the largest marsupial carnivore , 2004, Molecular ecology.

[53]  E. Deane,et al.  Possible antimicrobial compounds from the pouch of the koala,Phascolarctos cinereus , 2001, Letters in Peptide Science.

[54]  H. Spielmann,et al.  Reproduction and development. , 1998, Environmental health perspectives.

[55]  Robert C. Edgar,et al.  Search and clustering orders of magnitude faster than BLAST , 2010 .

[56]  F. Bushman,et al.  QIIME allows integration and analysis of high-throughput community sequencing data. Nat. Meth. , 2010 .

[57]  P. Lawson,et al.  Cetobacterium somerae sp. nov. from human feces and emended description of the genus Cetobacterium. , 2003, Systematic and applied microbiology.

[58]  Hiroyuki Ogata,et al.  KEGG: Kyoto Encyclopedia of Genes and Genomes , 1999, Nucleic Acids Res..

[59]  D. Renouf,et al.  A Field-Study of Communication and Social-Behavior of the Tasmanian Devil at Feeding Sites , 1993 .

[60]  Supplemental Information 2: Kyoto Encyclopedia of genes and genomes. , 2022 .