How to switch a fluorophore: from undesired blinking to controlled photoswitching.
暂无分享,去创建一个
[1] C. Bustamante,et al. Counting single photoactivatable fluorescent molecules by photoactivated localization microscopy (PALM) , 2012, Proceedings of the National Academy of Sciences.
[2] Mark Bates,et al. Multicolor Super-Resolution Imaging with Photo-Switchable Fluorescent Probes , 2007, Science.
[3] M. Heilemann,et al. Direct stochastic optical reconstruction microscopy with standard fluorescent probes , 2011, Nature Protocols.
[4] Atsushi Miyawaki,et al. Photo-induced peptide cleavage in the green-to-red conversion of a fluorescent protein. , 2003, Molecular cell.
[5] David Baddeley,et al. 4D Super-Resolution Microscopy with Conventional Fluorophores and Single Wavelength Excitation in Optically Thick Cells and Tissues , 2011, PloS one.
[6] V. Verkhusha,et al. Engineering of a monomeric green-to-red photoactivatable fluorescent protein induced by blue light , 2006, Nature Biotechnology.
[7] Paul R. Selvin,et al. Myosin V Walks Hand-Over-Hand: Single Fluorophore Imaging with 1.5-nm Localization , 2003, Science.
[8] W. Moerner,et al. Illuminating single molecules in condensed matter. , 1999, Science.
[9] Jan Vogelsang,et al. Make them blink: probes for super-resolution microscopy. , 2010, Chemphyschem : a European journal of chemical physics and physical chemistry.
[10] Shimon Weiss,et al. Superresolution optical fluctuation imaging with organic dyes. , 2010, Angewandte Chemie.
[11] T. Yanagida,et al. Mechanochemical coupling in actomyosin energy transduction studied by in vitro movement assay. , 1990, Journal of molecular biology.
[12] X. Zhuang,et al. Breaking the Diffraction Barrier: Super-Resolution Imaging of Cells , 2010, Cell.
[13] Masahiro Irie,et al. Organic chemistry: A digital fluorescent molecular photoswitch , 2002, Nature.
[14] Kristin L. Hazelwood,et al. A bright and photostable photoconvertible fluorescent protein for fusion tags , 2009, Nature Methods.
[15] R. Tsien,et al. The Fluorescent Toolbox for Assessing Protein Location and Function , 2006, Science.
[16] Michael D. Mason,et al. Ultra-high resolution imaging by fluorescence photoactivation localization microscopy. , 2006, Biophysical journal.
[17] X. Zhuang,et al. Fast three-dimensional super-resolution imaging of live cells , 2011, Nature Methods.
[18] Joshua C Vaughan,et al. Phosphine quenching of cyanine dyes as a versatile tool for fluorescence microscopy. , 2013, Journal of the American Chemical Society.
[19] A. Miyawaki,et al. An optical marker based on the UV-induced green-to-red photoconversion of a fluorescent protein , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[20] A. Miyawaki,et al. Regulated Fast Nucleocytoplasmic Shuttling Observed by Reversible Protein Highlighting , 2004, Science.
[21] Peter J. Verveer,et al. Chemically Induced Photoswitching of Fluorescent Probes—A General Concept for Super-Resolution Microscopy , 2011, Molecules.
[22] M. Davidson,et al. Advances in fluorescent protein technology , 2011, Journal of Cell Science.
[23] E. Betzig,et al. Live-cell photoactivated localization microscopy of nanoscale adhesion dynamics , 2008, Nature Methods.
[24] S. Holden,et al. DAOSTORM: an algorithm for high- density super-resolution microscopy , 2011, Nature Methods.
[25] Jan Vogelsang,et al. Controlling the fluorescence of ordinary oxazine dyes for single-molecule switching and superresolution microscopy , 2009, Proceedings of the National Academy of Sciences.
[26] M. Sauer,et al. rapidSTORM: accurate, fast open-source software for localization microscopy , 2012, Nature Methods.
[27] S. Hell. Microscopy and its focal switch , 2008, Nature Methods.
[28] S. van de Linde,et al. Methylene blue- and thiol-based oxygen depletion for super-resolution imaging. , 2013, Analytical chemistry.
[29] Masahiro Irie,et al. Diarylethenes for Memories and Switches. , 2000, Chemical reviews.
[30] W. Webb,et al. Precise nanometer localization analysis for individual fluorescent probes. , 2002, Biophysical journal.
[31] J. Widengren,et al. Iodide as a fluorescence quencher and promoter--mechanisms and possible implications. , 2010, The journal of physical chemistry. B.
[32] M. Roeffaers,et al. Super-resolution reactivity mapping of nanostructured catalyst particles. , 2009, Angewandte Chemie.
[33] M. Bodenstein,et al. Eine Theorie der photochemischen Reaktionsgeschwindigkeiten , 1913 .
[34] S. Hell,et al. Fluorescence nanoscopy by ground-state depletion and single-molecule return , 2008, Nature Methods.
[35] Wesley R. Legant,et al. Carbofluoresceins and Carborhodamines as Scaffolds for High-Contrast Fluorogenic Probes , 2013, ACS chemical biology.
[36] M. Tokunaga,et al. Highly inclined thin illumination enables clear single-molecule imaging in cells , 2008, Nature Methods.
[37] H Schindler,et al. Imaging of single molecule diffusion. , 1996, Proceedings of the National Academy of Sciences of the United States of America.
[38] S. Hell,et al. Breaking the diffraction resolution limit by stimulated emission: stimulated-emission-depletion fluorescence microscopy. , 1994, Optics letters.
[39] M. Gustafsson. Surpassing the lateral resolution limit by a factor of two using structured illumination microscopy , 2000, Journal of microscopy.
[40] J. Lippincott-Schwartz,et al. Imaging Intracellular Fluorescent Proteins at Nanometer Resolution , 2006, Science.
[41] M. Heilemann,et al. Live-cell super-resolution imaging with synthetic fluorophores. , 2012, Annual review of physical chemistry.
[42] S. McKinney,et al. Nonblinking and long-lasting single-molecule fluorescence imaging , 2006, Nature Methods.
[43] K. A. Connors. Chemical Kinetics: The Study of Reaction Rates in Solution , 1990 .
[44] George H. Patterson,et al. A Photoactivatable GFP for Selective Photolabeling of Proteins and Cells , 2002, Science.
[45] Mike Heilemann,et al. A reducing and oxidizing system minimizes photobleaching and blinking of fluorescent dyes. , 2008, Angewandte Chemie.
[46] S. Englander,et al. Biochemistry without oxygen. , 1987, Analytical biochemistry.
[47] Michael J Rust,et al. Sub-diffraction-limit imaging by stochastic optical reconstruction microscopy (STORM) , 2006, Nature Methods.
[48] W. E. Moerner,et al. A photoactivatable push-pull fluorophore for single-molecule imaging in live cells. , 2008, Journal of the American Chemical Society.
[49] Taekjip Ha,et al. Photophysics of fluorescent probes for single-molecule biophysics and super-resolution imaging. , 2012, Annual review of physical chemistry.
[50] Christian Eggeling,et al. Diffraction-unlimited all-optical imaging and writing with a photochromic GFP , 2011, Nature.
[51] D. Haltrich,et al. Enzymatic Oxygen Scavenging for Photostability without pH Drop in Single-Molecule Experiments , 2012, ACS nano.
[52] Paul D. Dunne,et al. Quantitative single-molecule microscopy reveals that CENP-ACnp1 deposition occurs during G2 in fission yeast , 2012, Open Biology.
[53] R. Tsien,et al. On/off blinking and switching behaviour of single molecules of green fluorescent protein , 1997, Nature.
[54] P. Annibale,et al. Photoactivatable Fluorescent Protein mEos2 Displays Repeated Photoactivation after a Long-Lived Dark State in the Red Photoconverted Form , 2010 .
[55] Christian Eggeling,et al. Strategies to improve photostabilities in ultrasensitive fluorescence spectroscopy. , 2007, The journal of physical chemistry. A.
[56] P. Dedecker,et al. Fluorescent proteins: shine on, you crazy diamond. , 2013, Journal of the American Chemical Society.
[57] Stephan J Sigrist,et al. Multi‐colour direct STORM with red emitting carbocyanines , 2012, Biology of the cell.
[58] Mike Heilemann,et al. Super-resolution imaging with small organic fluorophores. , 2009, Angewandte Chemie.
[59] S W Hell,et al. Photochromic rhodamines provide nanoscopy with optical sectioning. , 2007, Angewandte Chemie.
[60] Suliana Manley,et al. Photoactivatable mCherry for high-resolution two-color fluorescence microscopy , 2009, Nature Methods.
[61] E. Gouaux,et al. Dynamic superresolution imaging of endogenous proteins on living cells at ultra-high density. , 2010, Biophysical journal.
[62] Christian Eggeling,et al. A reversibly photoswitchable GFP-like protein with fluorescence excitation decoupled from switching , 2011, Nature Biotechnology.
[63] Viola Vogel,et al. Binding-activated localization microscopy of DNA structures. , 2011, Nano letters.
[64] M. Heilemann,et al. Carbocyanine dyes as efficient reversible single-molecule optical switch. , 2005, Journal of the American Chemical Society.
[65] J. Wiedenmann,et al. Structural basis for photo-induced protein cleavage and green-to-red conversion of fluorescent protein EosFP. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[66] Jan Vogelsang,et al. Superresolution microscopy on the basis of engineered dark states. , 2008, Journal of the American Chemical Society.
[67] Colin Echeverría Aitken,et al. An oxygen scavenging system for improvement of dye stability in single-molecule fluorescence experiments. , 2008, Biophysical journal.
[68] Mark Bates,et al. Short-range spectroscopic ruler based on a single-molecule optical switch. , 2005, Physical review letters.
[69] R. Gleiter,et al. Photochromism of Rhodamine Derivatives , 1977 .
[70] Prabuddha Sengupta,et al. Probing protein heterogeneity in the plasma membrane using PALM and pair correlation analysis , 2011, Nature Methods.
[71] Mike Heilemann,et al. Photoinduced formation of reversible dye radicals and their impact on super-resolution imaging , 2011, Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology.
[72] M. Field,et al. Structural characterization of IrisFP, an optical highlighter undergoing multiple photo-induced transformations , 2008, Proceedings of the National Academy of Sciences.
[73] Mike Heilemann,et al. Monitoring multiple distances within a single molecule using switchable FRET , 2010, Nature Methods.
[74] S. Weiss,et al. Fast, background-free, 3D super-resolution optical fluctuation imaging (SOFI) , 2009, Proceedings of the National Academy of Sciences.
[75] Lei Zhu,et al. Faster STORM using compressed sensing , 2012, Nature Methods.
[76] David R. Liu,et al. Photoswitching Mechanism of Cyanine Dyes , 2009, Journal of the American Chemical Society.
[77] S Wolter,et al. Real‐time computation of subdiffraction‐resolution fluorescence images , 2010, Journal of microscopy.
[78] R. Heintzmann,et al. Superresolution by localization of quantum dots using blinking statistics. , 2005, Optics express.
[79] S. Lukyanov,et al. Fluorescent proteins and their applications in imaging living cells and tissues. , 2010, Physiological reviews.
[80] J. Sibarita,et al. Real-Time Analysis and Visualization for Single-Molecule Based Super-Resolution Microscopy , 2013, PloS one.
[81] M. Heilemann,et al. Identification of the Product of Photoswitching of an Oxazine Fluorophore Using Fourier Transform Infrared Difference Spectroscopy , 2010 .
[82] Shu Jia,et al. Ultra-bright Photoactivatable Fluorophores Created by Reductive Caging , 2012, Nature Methods.
[83] H. Flyvbjerg,et al. Optimized localization-analysis for single-molecule tracking and super-resolution microscopy , 2010, Nature Methods.
[84] S. Weiss. Fluorescence spectroscopy of single biomolecules. , 1999, Science.
[85] R. Hochstrasser,et al. Wide-field subdiffraction imaging by accumulated binding of diffusing probes , 2006, Proceedings of the National Academy of Sciences.
[86] J. Wiedenmann,et al. EosFP, a fluorescent marker protein with UV-inducible green-to-red fluorescence conversion. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[87] Suliana Manley,et al. Superresolution imaging using single-molecule localization. , 2010, Annual review of physical chemistry.
[88] Mark Bates,et al. Evaluation of fluorophores for optimal performance in localization-based super-resolution imaging , 2011, Nature Methods.
[89] Benjamin B. Machta,et al. Correlation Functions Quantify Super-Resolution Images and Estimate Apparent Clustering Due to Over-Counting , 2011, PloS one.
[90] M. Heilemann,et al. Subdiffraction-resolution fluorescence imaging with conventional fluorescent probes. , 2008, Angewandte Chemie.
[91] Mike Heilemann,et al. Live-cell super-resolution imaging with trimethoprim conjugates , 2010, Nature Methods.
[92] Mike Heilemann,et al. Measuring localization performance of super-resolution algorithms on very active samples. , 2011, Optics express.
[93] Keith A. Lidke,et al. Fast, single-molecule localization that achieves theoretically minimum uncertainty , 2010, Nature Methods.
[94] M. Sauer. Reversible molecular photoswitches: a key technology for nanoscience and fluorescence imaging. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[95] N. Murthy,et al. Hydrocyanines: a class of fluorescent sensors that can image reactive oxygen species in cell culture, tissue, and in vivo. , 2009, Angewandte Chemie.