An Improved Retinal Vessel Segmentation Framework Using Frangi Filter Coupled With the Probabilistic Patch Based Denoiser

Vessel segmentation has come a long way in terms of matching the experts at detection accuracy, yet there is potential for further improvement. In this regard, the accurate detection of vessels is generally more challenging due to the high variations in vessel contrast, width, and the observed noise level. Most vessel segmentation strategies utilize contrast enhancement as a preprocessing step, which has an inherent tendency to aggravate the noise and therefore, impede accurate vessel detection. To alleviate this problem, we propose to use the state-of-the-art Probabilistic Patch-Based (PPB) denoiser within the framework of an unsupervised retinal vessel segmentation strategy based on the Frangi filter. The PPB denoiser helps preserve vascular structure while effectively dealing with the amplified noise. Also, the modified Frangi filter is evaluated separately for tiny and large vessels, followed by individual segmentation and linear recombination of the binarized outputs. This way, the performance of the modified Frangi filter is significantly enhanced. The performance evaluation of the proposed method is evaluated on two recognized open-access datasets, viz: DRIVE and STARE. The proposed strategy yields competitive results for both preprocessing modalities, i.e., Contrast Limited Adaptive Histogram Equalization (CLAHE) and Generalized Linear Model (GLM). The performance observed for CLAHE over DRIVE and STARE datasets is (<inline-formula> <tex-math notation="LaTeX">$Sn = 0.8027$ </tex-math></inline-formula>, <inline-formula> <tex-math notation="LaTeX">$Acc = 0.9561$ </tex-math></inline-formula>) and (<inline-formula> <tex-math notation="LaTeX">$Sn = 0.798$ </tex-math></inline-formula>, <inline-formula> <tex-math notation="LaTeX">$Acc = 0.9561$ </tex-math></inline-formula>), respectively. For GLM, it is observed to be (<inline-formula> <tex-math notation="LaTeX">$Sn = 0.7907$ </tex-math></inline-formula>, <inline-formula> <tex-math notation="LaTeX">$Acc = 0.9603$ </tex-math></inline-formula>) and (<inline-formula> <tex-math notation="LaTeX">$Sn = 0.7860$ </tex-math></inline-formula>, <inline-formula> <tex-math notation="LaTeX">$Acc = 0.9583$ </tex-math></inline-formula>) over DRIVE and STARE datasets, respectively. Furthermore, based on the conducted comparative study, it is established that the proposed method outperforms various notable vessel segmentation methods available in the existing literature.

[1]  Bunyarit Uyyanonvara,et al.  Blood vessel segmentation methodologies in retinal images - A survey , 2012, Comput. Methods Programs Biomed..

[2]  Jean-Michel Morel,et al.  A non-local algorithm for image denoising , 2005, 2005 IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR'05).

[3]  Roberto Marcondes Cesar Junior,et al.  Retinal vessel segmentation using the 2-D Gabor wavelet and supervised classification , 2005, IEEE Transactions on Medical Imaging.

[4]  Bram van Ginneken,et al.  Comparative study of retinal vessel segmentation methods on a new publicly available database , 2004, SPIE Medical Imaging.

[5]  Nidal Kamel,et al.  Denoising methods for retinal fundus images , 2014, 2014 5th International Conference on Intelligent and Advanced Systems (ICIAS).

[6]  Muhammad Shahid,et al.  Robust Retinal Vessel Segmentation using Vessel's Location Map and Frangi Enhancement Filter , 2018, IET Image Process..

[7]  Ali Mahlooji Far,et al.  Retinal Image Analysis Using Curvelet Transform and Multistructure Elements Morphology by Reconstruction , 2011, IEEE Transactions on Biomedical Engineering.

[8]  Muhammad Moazam Fraz,et al.  Application of Morphological Bit Planes in Retinal Blood Vessel Extraction , 2013, Journal of Digital Imaging.

[9]  Nidal S. Kamel,et al.  Identification of noise in the fundus images , 2013, 2013 IEEE International Conference on Control System, Computing and Engineering.

[10]  Ying Sun,et al.  Back-propagation network and its configuration for blood vessel detection in angiograms , 1995, IEEE Trans. Neural Networks.

[11]  Pierrick Coupé,et al.  Bayesian non local means-based speckle filtering , 2008, 2008 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro.

[12]  Manoranjan Paul,et al.  Computerised approaches for the detection of diabetic retinopathy using retinal fundus images: a survey , 2017, Pattern Analysis and Applications.

[13]  Arwa Ahmed Gasm Elseid,et al.  Evaluation of Spatial Filtering Techniques in Retinal Fundus Images , 2018 .

[14]  Alan Wee-Chung Liew,et al.  General Retinal Vessel Segmentation Using Regularization-Based Multiconcavity Modeling , 2010, IEEE Transactions on Medical Imaging.

[15]  José Manuel Bravo,et al.  A New Supervised Method for Blood Vessel Segmentation in Retinal Images by Using Gray-Level and Moment Invariants-Based Features , 2011, IEEE Transactions on Medical Imaging.

[16]  Mohammad A. U. Khan,et al.  Deriving scale normalisation factors for a GLoG detector , 2018, IET Image Process..

[17]  Deniz Erdogmus,et al.  Structure-based level set method for automatic retinal vasculature segmentation , 2014, EURASIP J. Image Video Process..

[18]  Matthew B. Blaschko,et al.  A Discriminatively Trained Fully Connected Conditional Random Field Model for Blood Vessel Segmentation in Fundus Images , 2017, IEEE Transactions on Biomedical Engineering.

[19]  Antonio Iodice,et al.  Scattering-Based Nonlocal Means SAR Despeckling , 2016, IEEE Transactions on Geoscience and Remote Sensing.

[20]  Bunyarit Uyyanonvara,et al.  An approach to localize the retinal blood vessels using bit planes and centerline detection , 2012, Comput. Methods Programs Biomed..

[21]  Hamid Reza Pourreza,et al.  Improvement of retinal blood vessel detection using morphological component analysis , 2015, Comput. Methods Programs Biomed..

[22]  Sonam Singh,et al.  A fully convolutional neural network based structured prediction approach towards the retinal vessel segmentation , 2016, 2017 IEEE 14th International Symposium on Biomedical Imaging (ISBI 2017).

[23]  Kotagiri Ramamohanarao,et al.  An effective retinal blood vessel segmentation method using multi-scale line detection , 2013, Pattern Recognit..

[24]  Qinmu Peng,et al.  Segmentation of retinal blood vessels using the radial projection and semi-supervised approach , 2011, Pattern Recognit..

[25]  Sandra C Fuchs,et al.  Measuring arteriolar-to-venous ratio in retinal photography of patients with hypertension: development and application of a new semi-automated method. , 2005, American journal of hypertension.

[26]  Karel J. Zuiderveld,et al.  Contrast Limited Adaptive Histogram Equalization , 1994, Graphics Gems.

[27]  Nitish Srivastava,et al.  Improving neural networks by preventing co-adaptation of feature detectors , 2012, ArXiv.

[28]  Lei Zhang,et al.  Retinal vessel extraction by matched filter with first-order derivative of Gaussian , 2010, Comput. Biol. Medicine.

[29]  Josien P. W. Pluim,et al.  Robust Retinal Vessel Segmentation via Locally Adaptive Derivative Frames in Orientation Scores , 2016, IEEE Transactions on Medical Imaging.

[30]  Klaus D. McDonald-Maier,et al.  Multi-scale image denoising based on goodness of fit (GOF) tests , 2016, 2016 24th European Signal Processing Conference (EUSIPCO).

[31]  Keshab K. Parhi,et al.  Blood Vessel Segmentation of Fundus Images by Major Vessel Extraction and Subimage Classification , 2015, IEEE Journal of Biomedical and Health Informatics.

[32]  Manoranjan Paul,et al.  Contrast normalization steps for increased sensitivity of a retinal image segmentation method , 2017, Signal Image Video Process..

[33]  Jürgen Weese,et al.  Multi-scale line segmentation with automatic estimation of width, contrast and tangential direction in 2D and 3D medical images , 1997, CVRMed.

[34]  M. Goldbaum,et al.  Detection of blood vessels in retinal images using two-dimensional matched filters. , 1989, IEEE transactions on medical imaging.

[35]  Guido Gerig,et al.  3D Multi-scale line filter for segmentation and visualization of curvilinear structures in medical images , 1997, CVRMed.

[36]  T. W. Ridler,et al.  Picture thresholding using an iterative selection method. , 1978 .

[37]  Bostjan Likar,et al.  Beyond Frangi: an improved multiscale vesselness filter , 2015, Medical Imaging.

[38]  Ana Maria Mendonça,et al.  Segmentation of retinal blood vessels by combining the detection of centerlines and morphological reconstruction , 2006, IEEE Transactions on Medical Imaging.

[39]  Muhammad Moazam Fraz,et al.  QUARTZ: Quantitative Analysis of Retinal Vessel Topology and size - An automated system for quantification of retinal vessels morphology , 2015, Expert Syst. Appl..

[40]  Abdul Jalil,et al.  A robust technique based on VLM and Frangi filter for retinal vessel extraction and denoising , 2018, PloS one.

[41]  Muhammad Shahid,et al.  A Novel Fast GLM Approach for Retinal Vascular Segmentation and Denoising , 2017, J. Inf. Sci. Eng..

[42]  Manoranjan Paul,et al.  Impact of ICA-Based Image Enhancement Technique on Retinal Blood Vessels Segmentation , 2018, IEEE Access.

[43]  Abdul Jalil,et al.  A review of retinal blood vessels extraction techniques: challenges, taxonomy, and future trends , 2018, Pattern Analysis and Applications.

[44]  Alan Agresti,et al.  Categorical Data Analysis , 1991, International Encyclopedia of Statistical Science.

[45]  Aboul Ella Hassanien,et al.  Multi-objective retinal vessel localization using flower pollination search algorithm with pattern search , 2017, Adv. Data Anal. Classif..

[46]  Frank Y. Shih,et al.  Retinal vessels segmentation based on level set and region growing , 2014, Pattern Recognit..

[47]  George Azzopardi,et al.  Trainable COSFIRE filters for vessel delineation with application to retinal images , 2015, Medical Image Anal..

[48]  Mohammed Al-Rawi,et al.  An improved matched filter for blood vessel detection of digital retinal images , 2007, Comput. Biol. Medicine.

[49]  Rodrigo M. S. Veras,et al.  An unsupervised coarse-to-fine algorithm for blood vessel segmentation in fundus images , 2017, Expert Syst. Appl..

[50]  Elisa Ricci,et al.  Retinal Blood Vessel Segmentation Using Line Operators and Support Vector Classification , 2007, IEEE Transactions on Medical Imaging.

[51]  Emanuele Trucco,et al.  Leveraging Multiscale Hessian-Based Enhancement With a Novel Exudate Inpainting Technique for Retinal Vessel Segmentation , 2016, IEEE Journal of Biomedical and Health Informatics.

[52]  Bunyarit Uyyanonvara,et al.  An Ensemble Classification-Based Approach Applied to Retinal Blood Vessel Segmentation , 2012, IEEE Transactions on Biomedical Engineering.

[53]  Erik J. Bekkers,et al.  Robust and Fast Vessel Segmentation via Gaussian Derivatives in Orientation Scores , 2015, ICIAP.

[54]  Manoranjan Paul,et al.  Retinal Blood Vessels Extraction of Challenging Images , 2018, AusDM.

[55]  Jon Atli Benediktsson,et al.  Automatic retinal vessel extraction based on directional mathematical morphology and fuzzy classification , 2014, Pattern Recognit. Lett..

[56]  Tianfu Wang,et al.  A Cross-Modality Learning Approach for Vessel Segmentation in Retinal Images , 2016, IEEE Transactions on Medical Imaging.

[57]  A.D. Hoover,et al.  Locating blood vessels in retinal images by piecewise threshold probing of a matched filter response , 2000, IEEE Transactions on Medical Imaging.

[58]  George Azzopardi,et al.  Trainable COSFIRE Filters for Keypoint Detection and Pattern Recognition , 2013, IEEE Transactions on Pattern Analysis and Machine Intelligence.

[59]  Alejandro F. Frangi,et al.  Muliscale Vessel Enhancement Filtering , 1998, MICCAI.

[60]  M. Usman Akram Retinal Image Preprocessing: Background and Noise Segmentation , 2012 .

[61]  Xin Yang,et al.  Joint Segment-Level and Pixel-Wise Losses for Deep Learning Based Retinal Vessel Segmentation , 2018, IEEE Transactions on Biomedical Engineering.

[62]  Florence Tupin,et al.  Iterative Weighted Maximum Likelihood Denoising With Probabilistic Patch-Based Weights , 2009, IEEE Transactions on Image Processing.

[63]  Waleed H. Abdulla,et al.  Improved Vessel Segmentation Using Curvelet Transform and Line Operators , 2018, 2018 Asia-Pacific Signal and Information Processing Association Annual Summit and Conference (APSIPA ASC).

[64]  Shoaib Ehsan,et al.  Multiscale image denoising using goodness-of-fit test based on EDF statistics , 2019, PloS one.

[65]  Tariq M. Khan,et al.  A generalized multi-scale line-detection method to boost retinal vessel segmentation sensitivity , 2018, Pattern Analysis and Applications.

[66]  Max A. Viergever,et al.  Ridge-based vessel segmentation in color images of the retina , 2004, IEEE Transactions on Medical Imaging.

[67]  Klaus D. McDonald-Maier,et al.  A Multiscale Denoising Framework Using Detection Theory with Application to Images from CMOS/CCD Sensors , 2019, Sensors.

[68]  B. M. ter Haar Romeny,et al.  Analysis of Distance/Similarity Measures for Diffusion Tensor Imaging , 2008 .

[69]  Jing Wu,et al.  Retinal Fundus Image Enhancement Using the Normalized Convolution and Noise Removing , 2016, Int. J. Biomed. Imaging.

[70]  Ganapati Panda,et al.  New Binary Hausdorff Symmetry measure based seeded region growing for retinal vessel segmentation , 2016 .

[71]  Lila Iznita Izhar,et al.  Extraction and reconstruction of retinal vasculature , 2007, Journal of medical engineering & technology.

[72]  Vasileios Megalooikonomou,et al.  Discriminative vessel segmentation in retinal images by fusing context-aware hybrid features , 2014, Machine Vision and Applications.

[73]  Yan Chen,et al.  Vessel extraction from non-fluorescein fundus images using orientation-aware detector , 2015, Medical Image Anal..