Cumulative Specificity: A Universal Mechanism for the Initiation of Protein Synthesis

© 2012 Nakamoto and Kezdy, licensee InTech. This is an open access chapter distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/3.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Cumulative Specificity: A Universal Mechanism for the Initiation of Protein Synthesis

[1]  A. Tomasselli,et al.  A cumulative specificity model for proteases from human immunodeficiency virus types 1 and 2, inferred from statistical analysis of an extended substrate data base. , 1991, The Journal of biological chemistry.

[2]  T. Nakamoto Evolution and the universality of the mechanism of initiation of protein synthesis. , 2009, Gene.

[3]  T. Nakamoto,et al.  THE INITIATION OF VIRAL PROTEIN SYNTHESIS IN E. COLI EXTRACTS* , 1966, Proceedings of the National Academy of Sciences of the United States of America.

[4]  M. Kozak Compilation and analysis of sequences upstream from the translational start site in eukaryotic mRNAs. , 1984, Nucleic acids research.

[5]  T. Nakamoto A unified view of the initiation of protein synthesis. , 2006, Biochemical and biophysical research communications.

[6]  H. Lodish,et al.  Translation of bacteriophage Q RNA by cytoplasmic extracts of mammalian cells. , 1973, Proceedings of the National Academy of Sciences of the United States of America.

[7]  Aleksey Y. Ogurtsov,et al.  A periodic pattern of mRNA secondary structure created by the genetic code , 2006, Nucleic acids research.

[8]  B. Paterson,et al.  Efficient translation of prokaryotic mRNAs in a eukaryotic cell-free system requires addition of a cap structure , 1979, Nature.

[9]  L. Brakier-Gingras,et al.  The anti-Shine-Dalgarno region in Escherichia coli 16S ribosomal RNA is not essential for the correct selection of translational starts. , 1990, Biochemistry.

[10]  M. Kozak Adherence to the first-AUG rule when a second AUG codon follows closely upon the first. , 1995, Proceedings of the National Academy of Sciences of the United States of America.

[11]  A. C. Looman,et al.  Influence of the codon following the AUG initiation codon on the expression of a modified lacZ gene in Escherichia coli. , 1987, The EMBO journal.

[12]  T. Nakamoto Mechanisms of the initiation of protein synthesis: in reading frame binding of ribosomes to mRNA , 2011, Molecular Biology Reports.

[13]  S. Arnott,et al.  The ribosome binding sites recognized by E. coli ribosomes have regions with signal character in both the leader and protein coding segments. , 1980, Nucleic acids research.

[14]  H. Lodish,et al.  Secondary structure of bacteriophage f2 ribonucleic acid and the initiation of in vitro protein biosynthesis. , 1970, Journal of molecular biology.

[15]  R. Abramson,et al.  The ATP-dependent interaction of eukaryotic initiation factors with mRNA. , 1987, The Journal of biological chemistry.

[16]  J. Shine,et al.  The 3'-terminal sequence of Escherichia coli 16S ribosomal RNA: complementarity to nonsense triplets and ribosome binding sites. , 1974, Proceedings of the National Academy of Sciences of the United States of America.

[17]  W. Merrick,et al.  Eukaryotic initiation factor (eIF)-4F. Implications for a role in internal initiation of translation. , 1991, The Journal of biological chemistry.

[18]  J. Steitz,et al.  How ribosomes select initiator regions in mRNA: base pair formation between the 3' terminus of 16S rRNA and the mRNA during initiation of protein synthesis in Escherichia coli. , 1975, Proceedings of the National Academy of Sciences of the United States of America.

[19]  H. A. Boer,et al.  Mutagenesis of the three bases preceding the start codon of the beta‐galactosidase mRNA and its effect on translation in Escherichia coli. , 1984, The EMBO journal.

[20]  J. Hedegaard,et al.  Structural requirements of the mRNA for intracistronic translation initiation of the enterobacterial infB gene , 2002, Genes to cells : devoted to molecular & cellular mechanisms.

[21]  T. Wilson,et al.  Efficient translation of the coat protein cistron of tobacco mosaic virus in a cell-free system from Escherichia coli. , 2005, European journal of biochemistry.

[22]  M. Kozak,et al.  How do eucaryotic ribosomes select initiation regions in messenger RNA? , 1978, Cell.

[23]  M. Nomura,et al.  PHAGE f2 RNA-DIRECTED BINDING OF FORMYLMETHIONYL-TRNA TO RIBOSOMES AND THE ROLE OF 30S RIBOSOMAL SUBUNITS IN INITIATION OF PROTEIN SYNTHESIS. , 1967, Proceedings of the National Academy of Sciences of the United States of America.

[24]  T. Nakamoto The initiation of eukaryotic and prokaryotic protein synthesis: a selective accessibility and multisubstrate enzyme reaction. , 2007, Gene.

[25]  W. Merrick Cap-dependent and cap-independent translation in eukaryotic systems. , 2004, Gene.

[26]  C. Gualerzi,et al.  Initiation of mRNA translation in prokaryotes. , 1990, Biochemistry.

[27]  H. Lodish,et al.  Protein synthesis in Escherichia coli extracts programmed by poliovirus RNA. , 1970, Journal of molecular biology.

[28]  P. Sarnow,et al.  Internal ribosome entry sites in eukaryotic mRNA molecules. , 2001, Genes & development.

[29]  W. Salser,et al.  Optical measurements reveal base-pairing in T4-specific mRNAs. , 1976, Biochimica et biophysica acta.

[30]  M. Inouye,et al.  Translation of a specific mRNA from Escherichia coli in a eukaryotic cell-free system. , 1976, Biochemical and biophysical research communications.

[31]  D. Koshland,et al.  Proteomics and Models for Enzyme Cooperativity* 210 , 2002, The Journal of Biological Chemistry.

[32]  B. Paterson,et al.  Efficient cap-dependent translation of polycistronic prokaryotic mRNAs is restricted to the first gene in the operon , 1979, Nature.

[33]  J. Steitz Genetic Signals and Nucleotide Sequences in Messenger RNA , 1979 .

[34]  C. DeLisi,et al.  Biological sciences: mRNA is expected to form stable secondary structures , 1974, Nature.

[35]  C. Gualerzi,et al.  Selection of the mRNA translation initiation region by Escherichia coli ribosomes. , 1988, Proceedings of the National Academy of Sciences of the United States of America.

[36]  W. Siegert,et al.  Translation of avian myeloblastosis virus RNA in a cell-free lysate of Escherichia coli. , 1972, Proceedings of the National Academy of Sciences of the United States of America.