Bistability in the Rac1, PAK, and RhoA Signaling Network Drives Actin Cytoskeleton Dynamics and Cell Motility Switches

Summary Dynamic interactions between RhoA and Rac1, members of the Rho small GTPase family, play a vital role in the control of cell migration. Using predictive mathematical modeling, mass spectrometry-based quantitation of network components, and experimental validation in MDA-MB-231 mesenchymal breast cancer cells, we show that a network containing Rac1, RhoA, and PAK family kinases can produce bistable, switch-like responses to a graded PAK inhibition. Using a small chemical inhibitor of PAK, we demonstrate that cellular RhoA and Rac1 activation levels respond in a history-dependent, bistable manner to PAK inhibition. Consequently, we show that downstream signaling, actin dynamics, and cell migration also behave in a bistable fashion, displaying switches and hysteresis in response to PAK inhibition. Our results demonstrate that PAK is a critical component in the Rac1-RhoA inhibitory crosstalk that governs bistable GTPase activity, cell morphology, and cell migration switches.

[1]  C. Nobes,et al.  Rho, Rac, and Cdc42 GTPases regulate the assembly of multimolecular focal complexes associated with actin stress fibers, lamellipodia, and filopodia , 1995, Cell.

[2]  Y. Ohta,et al.  FilGAP, a Rho/Rho-associated protein kinase–regulated GTPase-activating protein for Rac, controls tumor cell migration , 2012, Molecular biology of the cell.

[3]  C. Dermardirossian,et al.  p21-activated Kinase 1 Phosphorylates and Regulates 14-3-3 Binding to GEF-H1, a Microtubule-localized Rho Exchange Factor* , 2004, Journal of Biological Chemistry.

[4]  Paola Chiarugi,et al.  Rac and Rho GTPases in cancer cell motility control , 2010, Cell Communication and Signaling.

[5]  Katherine C. Chen,et al.  Sniffers, buzzers, toggles and blinkers: dynamics of regulatory and signaling pathways in the cell. , 2003, Current opinion in cell biology.

[6]  Olivier Pertz,et al.  Spatio-temporal Rho GTPase signaling – where are we now? , 2010, Journal of Cell Science.

[7]  X. Bustelo,et al.  GTP‐binding proteins of the Rho/Rac family: regulation, effectors and functions in vivo , 2007, BioEssays : news and reviews in molecular, cellular and developmental biology.

[8]  G. Borisy,et al.  Cell Migration: Integrating Signals from Front to Back , 2003, Science.

[9]  Anne J. Ridley,et al.  The small GTP-binding protein rho regulates the assembly of focal adhesions and actin stress fibers in response to growth factors , 1992, Cell.

[10]  Mitsuo Kawato,et al.  The protein kinase Mζ network as a bistable switch to store neuronal memory , 2010, BMC Systems Biology.

[11]  M. Selbach,et al.  Global quantification of mammalian gene expression control , 2011, Nature.

[12]  Pedro M. Valero-Mora,et al.  ggplot2: Elegant Graphics for Data Analysis , 2010 .

[13]  C. Eyers Universal sample preparation method for proteome analysis , 2009 .

[14]  Stephanie Alexander,et al.  Cancer Invasion and the Microenvironment: Plasticity and Reciprocity , 2011, Cell.

[15]  Alexandra Jilkine,et al.  Mathematical Model for Spatial Segregation of the Rho-Family GTPases Based on Inhibitory Crosstalk , 2007, Bulletin of mathematical biology.

[16]  Jeffrey R. Peterson,et al.  An allosteric kinase inhibitor binds the p21-activated kinase autoregulatory domain covalently , 2009, Molecular Cancer Therapeutics.

[17]  O. Rath,et al.  Extracellular Signal-Regulated Kinase Regulates RhoA Activation and Tumor Cell Plasticity by Inhibiting Guanine Exchange Factor H1 Activity , 2013, Molecular and Cellular Biology.

[18]  W. Kolch,et al.  HGF induces epithelial-to-mesenchymal transition by modulating the mammalian hippo/MST2 and ISG15 pathways. , 2014, Journal of proteome research.

[19]  M. Mann,et al.  Universal sample preparation method for proteome analysis , 2009, Nature Methods.

[20]  T. Holak,et al.  Lifeact: a versatile marker to visualize F-actin , 2008, Nature Methods.

[21]  Boris N. Kholodenko,et al.  Emergence of bimodal cell population responses from the interplay between analog single-cell signaling and protein expression noise , 2012, BMC Systems Biology.

[22]  B. Kholodenko Cell-signalling dynamics in time and space , 2006, Nature Reviews Molecular Cell Biology.

[23]  K. Hahn,et al.  Spatial and Temporal Analysis of Rac Activation during Live Neutrophil Chemotaxis , 2002, Current Biology.

[24]  Chin-Jen Ku,et al.  Identifying network motifs that buffer front-to-back signaling in polarized neutrophils. , 2013, Cell reports.

[25]  Richard A. Cerione,et al.  The Cool-2/α-Pix Protein Mediates a Cdc42-Rac Signaling Cascade , 2005, Current Biology.

[26]  Marco Y. Hein,et al.  A “Proteomic Ruler” for Protein Copy Number and Concentration Estimation without Spike-in Standards* , 2014, Molecular & Cellular Proteomics.

[27]  B. Kholodenko,et al.  Control of the G-protein cascade dynamics by GDP dissociation inhibitors. , 2013, Molecular bioSystems.

[28]  Gaudenz Danuser,et al.  Coordination of Rho GTPase activities during cell protrusion , 2009, Nature.

[29]  John J. Tyson,et al.  Hysteresis drives cell-cycle transitions in Xenopus laevis egg extracts , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[30]  Hadley Wickham,et al.  ggplot2 - Elegant Graphics for Data Analysis (2nd Edition) , 2017 .

[31]  K. Burridge,et al.  Rho-stimulated contractility drives the formation of stress fibers and focal adhesions , 1996, The Journal of cell biology.

[32]  Dan Baird,et al.  The Cool-2/alpha-Pix protein mediates a Cdc42-Rac signaling cascade. , 2005, Current biology : CB.

[33]  B. Kholodenko,et al.  Nonlinear signalling networks and cell-to-cell variability transform external signals into broadly distributed or bimodal responses , 2014, Journal of The Royal Society Interface.

[34]  Prahlad T. Ram,et al.  MAP Kinase Phosphatase As a Locus of Flexibility in a Mitogen-Activated Protein Kinase Signaling Network , 2002, Science.

[35]  K. Burridge,et al.  Rho protein crosstalk: another social network? , 2011, Trends in cell biology.

[36]  P. Bickel,et al.  System wide analyses have underestimated protein abundances and the importance of transcription in mammals , 2012, PeerJ.

[37]  K. Kaibuchi,et al.  Small GTP-binding proteins. , 1992, International review of cytology.

[38]  Krister Wennerberg,et al.  Rho and Rac Take Center Stage , 2004, Cell.

[39]  G. Bokoch,et al.  Nucleotide exchange factor GEF-H1 mediates cross-talk between microtubules and the actin cytoskeleton , 2002, Nature Cell Biology.

[40]  J. Segall,et al.  Rac and Rho driving tumor invasion: who's at the wheel? , 2009, Genome Biology.

[41]  B. Kholodenko,et al.  The topology design principles that determine the spatiotemporal dynamics of G-protein cascades. , 2012, Molecular Biosystems.

[42]  Boris N. Kholodenko,et al.  DYVIPAC: an integrated analysis and visualisation framework to probe multi-dimensional biological networks , 2015, Scientific Reports.

[43]  B. Kholodenko,et al.  Signaling switches and bistability arising from multisite phosphorylation in protein kinase cascades , 2004, The Journal of cell biology.

[44]  Alan Hall,et al.  Rho GTPases Control Polarity, Protrusion, and Adhesion during Cell Movement , 1999, The Journal of cell biology.

[45]  James E. Ferrell,et al.  A positive-feedback-based bistable ‘memory module’ that governs a cell fate decision , 2007, Nature.

[46]  J. Albeck,et al.  Regulation of the Cool/Pix Proteins , 2002, The Journal of Biological Chemistry.

[47]  D. Yablonski,et al.  A Pak- and Pix-dependent branch of the SDF-1alpha signalling pathway mediates T cell chemotaxis across restrictive barriers. , 2006, The Biochemical journal.

[48]  Kenneth M. Yamada,et al.  Random versus directionally persistent cell migration , 2009, Nature Reviews Molecular Cell Biology.

[49]  Kevin W. Eliceiri,et al.  Microtubules regulate GEF-H1 in response to extracellular matrix stiffness , 2012, Molecular biology of the cell.

[50]  B. Goode,et al.  Actin nucleation and elongation factors: mechanisms and interplay. , 2009, Current opinion in cell biology.

[51]  Alfred Wittinghofer,et al.  GEFs and GAPs: Critical Elements in the Control of Small G Proteins , 2007, Cell.

[52]  Matteo Semplice,et al.  A Bistable Model of Cell Polarity , 2012, PloS one.

[53]  Anne J. Ridley,et al.  The small GTP-binding protein rac regulates growth factor-induced membrane ruffling , 1992, Cell.

[54]  Eduardo Sontag,et al.  Building a cell cycle oscillator: hysteresis and bistability in the activation of Cdc2 , 2003, Nature Cell Biology.

[55]  S. Deacon,et al.  An isoform-selective, small-molecule inhibitor targets the autoregulatory mechanism of p21-activated kinase. , 2008, Chemistry & biology.

[56]  E. Manser,et al.  Do PAKs make good drug targets? , 2010, F1000 biology reports.

[57]  G. Bokoch Biology of the p21-activated kinases. , 2003, Annual review of biochemistry.

[58]  E. Sahai,et al.  Rac Activation and Inactivation Control Plasticity of Tumor Cell Movement , 2008, Cell.

[59]  J. Ferrell Self-perpetuating states in signal transduction: positive feedback, double-negative feedback and bistability. , 2002, Current opinion in cell biology.

[60]  J. Hartwig,et al.  FilGAP, a Rho- and ROCK-regulated GAP for Rac binds filamin A to control actin remodelling , 2006, Nature Cell Biology.

[61]  Alan Hall,et al.  Rho GTPases: biochemistry and biology. , 2005, Annual review of cell and developmental biology.

[62]  Boris N Kholodenko,et al.  Long-range signaling by phosphoprotein waves arising from bistability in protein kinase cascades , 2006, Molecular systems biology.

[63]  K. Hahn,et al.  Spatiotemporal dynamics of RhoA activity in migrating cells , 2006, Nature.