A mutation-centric approach to identifying pharmacogenomic relations in text

[1]  Stuart J. Nelson,et al.  Normalized names for clinical drugs: RxNorm at 6 years , 2011, J. Am. Medical Informatics Assoc..

[2]  Richard M Weinshilboum,et al.  Genomics and drug response. , 2011, The New England journal of medicine.

[3]  Olivier Bodenreider,et al.  Toward an automatic method for extracting cancer- and other disease-related point mutations from the biomedical literature , 2011, Bioinform..

[4]  Fabio Rinaldi,et al.  Mining complex Drug/Gene/Disease relations , 2011, PSB 2011.

[5]  Dina Demner-Fushman,et al.  Exploring automatic approaches to extracting pharmacogenomic information from the biomedical literature. , 2011 .

[6]  Russ B. Altman,et al.  Author ' s personal copy Using text to build semantic networks for pharmacogenomics , 2010 .

[7]  Yael Garten,et al.  Recent progress in automatically extracting information from the pharmacogenomic literature. , 2010, Pharmacogenomics.

[8]  Helen L. Johnson,et al.  Leveraging Gene Ontology Annotations to Improve a Memory-Based Language Understanding System , 2010, 2010 IEEE Fourth International Conference on Semantic Computing.

[9]  R. Verbrugge,et al.  Warfarin genotyping reduces hospitalization rates results from the MM-WES (Medco-Mayo Warfarin Effectiveness study). , 2010, Journal of the American College of Cardiology.

[10]  Alan R. Aronson,et al.  An overview of MetaMap: historical perspective and recent advances , 2010, J. Am. Medical Informatics Assoc..

[11]  Russ B. Altman,et al.  Teaching computers to read the pharmacogenomics literature ... so you don't have to. , 2010, Pharmacogenomics.

[12]  R. Altman,et al.  Estimation of the warfarin dose with clinical and pharmacogenetic data. , 2009, The New England journal of medicine.

[13]  Michael Schroeder,et al.  Inter-species normalization of gene mentions with GNAT , 2008, ECCB.

[14]  Marc S. Williams,et al.  Pharmacogenetic testing of CYP2C9 and VKORC1 alleles for warfarin , 2008, Genetics in Medicine.

[15]  Feng Liu,et al.  The pharmacogenetics and pharmacogenomics knowledge base: accentuating the knowledge , 2007, Nucleic Acids Res..

[16]  Zhiyong Lu,et al.  OpenDMAP: An open source, ontology-driven concept analysis engine, with applications to capturing knowledge regarding protein transport, protein interactions and cell-type-specific gene expression , 2008, BMC Bioinformatics.

[17]  K. Bretonnel Cohen,et al.  Frontiers of biomedical text mining: current progress , 2007, Briefings Bioinform..

[18]  K. Bretonnel Cohen,et al.  MutationFinder: a high-performance system for extracting point mutation mentions from text , 2007, Bioinform..

[19]  Sophia Ananiadou,et al.  Text Mining for Biology And Biomedicine , 2005 .

[20]  Deborah A Nickerson,et al.  Effect of VKORC1 haplotypes on transcriptional regulation and warfarin dose. , 2005, The New England journal of medicine.

[21]  Olivier Bodenreider,et al.  The Unified Medical Language System (UMLS): integrating biomedical terminology , 2004, Nucleic Acids Res..

[22]  Christian Meisel,et al.  MDR1 genotypes do not influence the absorption of a single oral dose of 1 mg digoxin in healthy white males. , 2002, British journal of clinical pharmacology.

[23]  Joshua M. Stuart,et al.  Integrating genotype and phenotype information: an overview of the PharmGKB project , 2001, The Pharmacogenomics Journal.

[24]  Elizabeth M. Smigielski,et al.  dbSNP: the NCBI database of genetic variation , 2001, Nucleic Acids Res..

[25]  M. Relling,et al.  Pharmacogenomics: translating functional genomics into rational therapeutics. , 1999, Science.