Hierarchical Nonlocal Residual Networks for Image Quality Assessment of Pediatric Diffusion MRI with Limited and Noisy Annotations

Fast and automated image quality assessment (IQA) of diffusion MR images is crucial for making timely decisions for rescans. However, learning a model for this task is challenging as the number of annotated data is limited and the annotation labels might not always be correct. As a remedy, we will introduce in this paper an automatic image quality assessment (IQA) method based on hierarchical non-local residual networks for pediatric diffusion MR images. Our IQA is performed in three sequential stages, i.e., 1) slice-wise IQA, where a nonlocal residual network is first pre-trained to annotate each slice with an initial quality rating (i.e., pass/questionable/fail), which is subsequently refined via iterative semi-supervised learning and slice self-training; 2) volume-wise IQA, which agglomerates the features extracted from the slices of a volume, and uses a nonlocal network to annotate the quality rating for each volume via iterative volume self-training; and 3) subject-wise IQA, which ensembles the volumetric IQA results to determine the overall image quality pertaining to a subject. Experimental results demonstrate that our method, trained using only samples of modest size, exhibits great generalizability, and is capable of conducting rapid hierarchical IQA with near-perfect accuracy.

[1]  Hao Wu,et al.  Semi-Supervised Deep Learning Using Pseudo Labels for Hyperspectral Image Classification , 2018, IEEE Transactions on Image Processing.

[2]  Ashish Kapoor,et al.  Learning a blind measure of perceptual image quality , 2011, CVPR 2011.

[3]  Alan C. Bovik,et al.  Image information and visual quality , 2004, 2004 IEEE International Conference on Acoustics, Speech, and Signal Processing.

[4]  M. Verleysen,et al.  Classification in the Presence of Label Noise: A Survey , 2014, IEEE Transactions on Neural Networks and Learning Systems.

[5]  Avrim Blum,et al.  Learning from Labeled and Unlabeled Data using Graph Mincuts , 2001, ICML.

[6]  Alan C. Bovik,et al.  No-Reference Image Quality Assessment in the Spatial Domain , 2012, IEEE Transactions on Image Processing.

[7]  Qiang Yang,et al.  A Survey on Transfer Learning , 2010, IEEE Transactions on Knowledge and Data Engineering.

[8]  Sei-Wang Chen,et al.  A non-parametric blur measure based on edge analysis for image processing applications , 2004, IEEE Conference on Cybernetics and Intelligent Systems, 2004..

[9]  Yale Song,et al.  Learning from Noisy Labels with Distillation , 2017, 2017 IEEE International Conference on Computer Vision (ICCV).

[10]  Hersh Chandarana,et al.  Automated image quality evaluation of T2‐weighted liver MRI utilizing deep learning architecture , 2018, Journal of magnetic resonance imaging : JMRI.

[11]  Kim-Han Thung,et al.  Multi-stage Image Quality Assessment of Diffusion MRI via Semi-supervised Nonlocal Residual Networks , 2019, MICCAI.

[12]  Christophe Charrier,et al.  Blind Image Quality Assessment: A Natural Scene Statistics Approach in the DCT Domain , 2012, IEEE Transactions on Image Processing.

[13]  R. Unbehauen,et al.  Estimation of image noise variance , 1999 .

[14]  Raveendran Paramesran,et al.  Review of medical image quality assessment , 2016, Biomed. Signal Process. Control..

[15]  Xiaogang Wang,et al.  Learning from massive noisy labeled data for image classification , 2015, 2015 IEEE Conference on Computer Vision and Pattern Recognition (CVPR).

[16]  Christophe Lenglet,et al.  Advances in computational and statistical diffusion MRI , 2019, NMR in biomedicine.

[17]  Matthew S. Nokleby,et al.  Learning Deep Networks from Noisy Labels with Dropout Regularization , 2016, 2016 IEEE 16th International Conference on Data Mining (ICDM).

[18]  D. Sculley,et al.  Web-scale k-means clustering , 2010, WWW '10.

[19]  Konstantin Nikolaou,et al.  Automated reference-free detection of motion artifacts in magnetic resonance images , 2018, Magnetic Resonance Materials in Physics, Biology and Medicine.

[20]  François Chollet,et al.  Xception: Deep Learning with Depthwise Separable Convolutions , 2016, 2017 IEEE Conference on Computer Vision and Pattern Recognition (CVPR).

[21]  Chao Yang,et al.  A Survey on Deep Transfer Learning , 2018, ICANN.

[22]  J. Paul Brooks,et al.  Support Vector Machines with the Ramp Loss and the Hard Margin Loss , 2011, Oper. Res..

[23]  Dinggang Shen,et al.  The UNC/UMN Baby Connectome Project (BCP): An overview of the study design and protocol development , 2019, NeuroImage.

[24]  David S. Doermann,et al.  No-Reference Image Quality Assessment Using Visual Codebooks , 2012, IEEE Transactions on Image Processing.

[25]  Pierre Bellec,et al.  Supervised machine learning quality control for magnetic resonance artifacts in neonatal data sets , 2018, Human brain mapping.

[26]  Joan Bruna,et al.  Training Convolutional Networks with Noisy Labels , 2014, ICLR 2014.

[27]  Xiaokang Yang,et al.  No-reference image blur assessment based on gradient profile sharpness , 2013, 2013 IEEE International Symposium on Broadband Multimedia Systems and Broadcasting (BMSB).

[28]  A. Said,et al.  Objective no-reference image blur metric based on local phase coherence , 2009 .

[29]  Dong-Hyun Lee,et al.  Pseudo-Label : The Simple and Efficient Semi-Supervised Learning Method for Deep Neural Networks , 2013 .

[30]  Krzysztof J. Gorgolewski,et al.  MRIQC: Advancing the automatic prediction of image quality in MRI from unseen sites , 2016, bioRxiv.

[31]  Sergey Ioffe,et al.  Rethinking the Inception Architecture for Computer Vision , 2015, 2016 IEEE Conference on Computer Vision and Pattern Recognition (CVPR).

[32]  Abhinav Gupta,et al.  Non-local Neural Networks , 2017, 2018 IEEE/CVF Conference on Computer Vision and Pattern Recognition.

[33]  Patricia Ladret,et al.  The blur effect: perception and estimation with a new no-reference perceptual blur metric , 2007, Electronic Imaging.

[34]  Alan C. Bovik,et al.  A Two-Step Framework for Constructing Blind Image Quality Indices , 2010, IEEE Signal Processing Letters.

[35]  Xiaojin Zhu,et al.  --1 CONTENTS , 2006 .

[36]  Derek K. Jones,et al.  Diffusion‐tensor MRI: theory, experimental design and data analysis – a technical review , 2002 .

[37]  Azriel Rosenfeld,et al.  A Fast Parallel Algorithm for Blind Estimation of Noise Variance , 1990, IEEE Trans. Pattern Anal. Mach. Intell..

[38]  Jing Tian,et al.  Image Noise Estimation Using A Variation-Adaptive Evolutionary Approach , 2012, IEEE Signal Processing Letters.

[39]  John D. Lafferty,et al.  Semi-supervised learning using randomized mincuts , 2004, ICML.

[40]  Damon M. Chandler,et al.  No-reference image quality assessment based on log-derivative statistics of natural scenes , 2013, J. Electronic Imaging.

[41]  Dong-Hyuk Shin,et al.  Block-based noise estimation using adaptive Gaussian filtering , 2005, IEEE Transactions on Consumer Electronics.

[42]  Xiaodong Gu,et al.  No Reference Block Based Blur Detection , 2009, 2009 International Workshop on Quality of Multimedia Experience.

[43]  Sebastian Thrun,et al.  Text Classification from Labeled and Unlabeled Documents using EM , 2000, Machine Learning.

[44]  André Carlos Ponce de Leon Ferreira de Carvalho,et al.  Use of Classification Algorithms in Noise Detection and Elimination , 2009, HAIS.

[45]  Dumitru Erhan,et al.  Training Deep Neural Networks on Noisy Labels with Bootstrapping , 2014, ICLR.

[46]  Geoffrey E. Hinton,et al.  Learning to Label Aerial Images from Noisy Data , 2012, ICML.

[47]  Wen Gao,et al.  A no-reference perceptual blur metric using histogram of gradient profile sharpness , 2009, 2009 16th IEEE International Conference on Image Processing (ICIP).

[48]  Eric C. Larson,et al.  Most apparent distortion: full-reference image quality assessment and the role of strategy , 2010, J. Electronic Imaging.

[49]  Choh-Man Teng,et al.  A Comparison of Noise Handling Techniques , 2001, FLAIRS.

[50]  Taghi M. Khoshgoftaar,et al.  An Empirical Study of the Classification Performance of Learners on Imbalanced and Noisy Software Quality Data , 2007, 2007 IEEE International Conference on Information Reuse and Integration.

[51]  Jian Sun,et al.  Deep Residual Learning for Image Recognition , 2015, 2016 IEEE Conference on Computer Vision and Pattern Recognition (CVPR).

[52]  Ling Shao,et al.  Non-distortion-specific no-reference image quality assessment: A survey , 2015, Inf. Sci..

[53]  Shih-Ming Yang,et al.  A fast method for image noise estimation using Laplacian operator and adaptive edge detection , 2008, 2008 3rd International Symposium on Communications, Control and Signal Processing.

[54]  Mohamed Cheriet,et al.  Mean Deviation Similarity Index: Efficient and Reliable Full-Reference Image Quality Evaluator , 2016, IEEE Access.

[55]  Dilek Z. Hakkani-Tür,et al.  Automatic Labeling Inconsistencies Detection and Correction for Sentence Unit Segmentation in Conversational Speech , 2007, MLMI.

[56]  David Zhang,et al.  FSIM: A Feature Similarity Index for Image Quality Assessment , 2011, IEEE Transactions on Image Processing.

[57]  Hui Zhang,et al.  A supervised learning approach for diffusion MRI quality control with minimal training data , 2018, NeuroImage.

[58]  Eero P. Simoncelli,et al.  Image quality assessment: from error visibility to structural similarity , 2004, IEEE Transactions on Image Processing.

[59]  Abdul Rehman,et al.  Reduced-Reference Image Quality Assessment by Structural Similarity Estimation , 2012, IEEE Transactions on Image Processing.

[60]  Weisi Lin,et al.  An Objective Out-of-Focus Blur Measurement , 2005, 2005 5th International Conference on Information Communications & Signal Processing.

[61]  Qian Luo,et al.  Automated Quality Assessment of Structural Magnetic Resonance Brain Images Based on a Supervised Machine Learning Algorithm , 2016, Front. Neuroinform..

[62]  Aditya Krishna Menon,et al.  Learning with Symmetric Label Noise: The Importance of Being Unhinged , 2015, NIPS.

[63]  P. Basser,et al.  Microstructural and physiological features of tissues elucidated by quantitative-diffusion-tensor MRI. , 1996, Journal of magnetic resonance. Series B.

[64]  Michael I. Jordan,et al.  Convexity, Classification, and Risk Bounds , 2006 .

[65]  M. Dylan Tisdall,et al.  Head motion during MRI acquisition reduces gray matter volume and thickness estimates , 2015, NeuroImage.

[66]  Douglas L Arnold,et al.  Automated quality control of brain MR images , 2008, Journal of magnetic resonance imaging : JMRI.

[67]  Ross B. Girshick,et al.  Focal Loss for Dense Object Detection , 2017, IEEE Transactions on Pattern Analysis and Machine Intelligence.

[68]  Bin Yang,et al.  A Machine-learning framework for automatic reference-free quality assessment in MRI , 2018, Magnetic resonance imaging.

[69]  Dinggang Shen,et al.  Real-Time Quality Assessment of Pediatric MRI via Semi-Supervised Deep Nonlocal Residual Neural Networks , 2019, IEEE Transactions on Image Processing.

[70]  Lei Zhang,et al.  Deep Convolutional Neural Models for Picture-Quality Prediction: Challenges and Solutions to Data-Driven Image Quality Assessment , 2017, IEEE Signal Processing Magazine.

[71]  I. Johnstone,et al.  Ideal spatial adaptation by wavelet shrinkage , 1994 .

[72]  Jun Sun,et al.  Deep Learning From Noisy Image Labels With Quality Embedding , 2017, IEEE Transactions on Image Processing.

[73]  Jing Tian,et al.  Blind noisy image quality assessment using block homogeneity , 2014, Comput. Electr. Eng..

[74]  Andrew Zisserman,et al.  Very Deep Convolutional Networks for Large-Scale Image Recognition , 2014, ICLR.

[75]  Richard Nock,et al.  Making Deep Neural Networks Robust to Label Noise: A Loss Correction Approach , 2016, 2017 IEEE Conference on Computer Vision and Pattern Recognition (CVPR).

[76]  D. Le Bihan,et al.  Artifacts and pitfalls in diffusion MRI , 2006, Journal of magnetic resonance imaging : JMRI.

[77]  Zhou Wang,et al.  Image Sharpness Assessment Based on Local Phase Coherence , 2013, IEEE Transactions on Image Processing.

[78]  Ross B. Girshick,et al.  Seeing through the Human Reporting Bias: Visual Classifiers from Noisy Human-Centric Labels , 2015, 2016 IEEE Conference on Computer Vision and Pattern Recognition (CVPR).