Structural and mechanistic basis of porphyrin metallation by ferrochelatase.

Ferrochelatase, the enzyme catalyzing metallation of protoporphyrin IX at the terminal step of heme biosynthesis, was co-crystallized with an isomer mixture of the potent inhibitor N-methylmesoporphyrin (N-MeMP). The X-ray structure revealed the active site of the enzyme, to which only one of the isomers was bound, and for the first time allowed characterization of the mode of porphyrin macrocycle distortion by ferrochelatase. Crystallization of ferrochelatase and N-MeMP in the presence of Cu(2+) leads to metallation and demethylation of N-MeMP. A mechanism of porphyrin distortion is proposed, which assumes that the enzyme holds pyrrole rings B, C and D in a vice-like grip and forces a 36 degrees tilt on ring A.

[1]  O. P. Anderson,et al.  Structures and properties of N-methyltetraphenylporphyrin complexes. The crystal and molecular structure of chloro-N-methyl-.alpha.,.beta.,.gamma.,.delta.-tetraphenylporphinatozinc(II) and the chelate effect of zinc(II), cobalt(II), and cadmium(II) N-methylporphyrin complexes , 1978 .

[2]  J. Shelnutt,et al.  The structural origin of nonplanar heme distortions in tetraheme ferricytochromes c3. , 1998, Biochemistry.

[3]  H. Dailey,et al.  Interaction of free porphyrins and metalloporphyrins with mouse ferrochelatase. A model for the active site of ferrochelatase. , 1989, Biochimica et biophysica acta.

[4]  J. Zou,et al.  Improved methods for building protein models in electron density maps and the location of errors in these models. , 1991, Acta crystallographica. Section A, Foundations of crystallography.

[5]  D. Lavallee Kinetics and mechanisms of metalloporphyrin reactions , 1985 .

[6]  K S Wilson,et al.  Common chelatase design in the branched tetrapyrrole pathways of heme and anaerobic cobalamin synthesis. , 1999, Biochemistry.

[7]  F. De Matteis,et al.  Structural Isomerism and chirality of N‐monosubstituted protoporphyrins , 1982, FEBS letters.

[8]  R J Read,et al.  Crystallography & NMR system: A new software suite for macromolecular structure determination. , 1998, Acta crystallographica. Section D, Biological crystallography.

[9]  G J Barton,et al.  ALSCRIPT: a tool to format multiple sequence alignments. , 1993, Protein engineering.

[10]  Mike Carson,et al.  RIBBONS 2.0 , 1991 .

[11]  S. Nikonov,et al.  Crystal structure of ferrochelatase: the terminal enzyme in heme biosynthesis. , 1997, Structure.

[12]  Peter G. Schultz,et al.  Antibody-catalyzed porphyrin metallation. , 1990, Science.

[13]  L. Hederstedt,et al.  Purification and characterisation of a water-soluble ferrochelatase from Bacillus subtilis. , 1994, European journal of biochemistry.

[14]  P. Kraulis A program to produce both detailed and schematic plots of protein structures , 1991 .

[15]  K. Sharp,et al.  Protein folding and association: Insights from the interfacial and thermodynamic properties of hydrocarbons , 1991, Proteins.

[16]  H. Kohno,et al.  Site-directed mutagenesis of human ferrochelatase: identification of histidine-263 as a binding site for metal ions. , 1994, Biochimica et biophysica acta.

[17]  P. Schultz,et al.  Structural and kinetic evidence for strain in biological catalysis. , 1998, Biochemistry.

[18]  W. Jentzen,et al.  Structural characterization of synthetic and protein-bound porphyrins in terms of the lowest-frequency normal coordinates of the macrocycle , 1997 .

[19]  S. Al-Karadaghi,et al.  Purification, crystallization, and preliminary X‐ray analysis of Bacillus subtilis ferrochelatase , 1995, Proteins.

[20]  E. Grzybowska,et al.  Probing the Active-site Residues in Saccharomyces cerevisiae Ferrochelatase by Directed Mutagenesis , 1996, The Journal of Biological Chemistry.

[21]  Z. Otwinowski,et al.  [20] Processing of X-ray diffraction data collected in oscillation mode. , 1997, Methods in enzymology.

[22]  H. Dailey,et al.  Bovine ferrochelatase. Kinetic analysis of inhibition by N-methylprotoporphyrin, manganese, and heme. , 1983, The Journal of biological chemistry.

[23]  Axel T. Brunger,et al.  X-PLOR Version 3.1: A System for X-ray Crystallography and NMR , 1992 .