Direct simulation of protein-mediated vesicle fusion: lung surfactant protein B.

[1]  S. Rananavare,et al.  Hydrophobic surfactant proteins induce a phosphatidylethanolamine to form cubic phases. , 2010, Biophysical journal.

[2]  Marc Baaden,et al.  Complex molecular assemblies at hand via interactive simulations , 2009, J. Comput. Chem..

[3]  Gregory A Voth,et al.  New insights into BAR domain-induced membrane remodeling. , 2009, Biophysical journal.

[4]  Volker Knecht,et al.  A single bicontinuous cubic phase induced by fusion peptides. , 2009, Journal of the American Chemical Society.

[5]  Reinhard Jahn,et al.  Helical extension of the neuronal SNARE complex into the membrane , 2009, Nature.

[6]  Klaus Schulten,et al.  Simulations of membrane tubulation by lattices of amphiphysin N-BAR domains. , 2009, Structure.

[7]  Siewert J Marrink,et al.  Lipids on the move: simulations of membrane pores, domains, stalks and curves. , 2009, Biochimica et biophysica acta.

[8]  S. Rugonyi,et al.  The biophysical function of pulmonary surfactant , 2008, Respiratory Physiology & Neurobiology.

[9]  Siewert J. Marrink,et al.  The molecular face of lipid rafts in model membranes , 2008, Proceedings of the National Academy of Sciences.

[10]  A. Neumann,et al.  Current perspectives in pulmonary surfactant--inhibition, enhancement and evaluation. , 2008, Biochimica et biophysica acta.

[11]  Siewert J Marrink,et al.  The molecular mechanism of lipid monolayer collapse , 2008, Proceedings of the National Academy of Sciences.

[12]  M. Kozlov,et al.  Mechanics of membrane fusion , 2008, Nature Structural &Molecular Biology.

[13]  J. Rizo,et al.  Synaptic vesicle fusion , 2008, Nature Structural &Molecular Biology.

[14]  S. Harrison Viral membrane fusion , 2008, Nature Structural &Molecular Biology.

[15]  Reinhard Lipowsky,et al.  Tension-induced vesicle fusion: pathways and pore dynamics. , 2008, Soft matter.

[16]  R. Schultz-Heienbrok,et al.  Crystal structures of human saposins C andD: implications for lipid recognition and membrane interactions. , 2008, Structure.

[17]  R. Larson,et al.  The MARTINI Coarse-Grained Force Field: Extension to Proteins. , 2008, Journal of chemical theory and computation.

[18]  Siewert J Marrink,et al.  Mechanosensitive membrane channels in action. , 2008, Biophysical journal.

[19]  Syma Khalid,et al.  Coarse-grained MD simulations of membrane protein-bilayer self-assembly. , 2008, Structure.

[20]  Perttu S. Niemelä,et al.  Structure of spheroidal HDL particles revealed by combined atomistic and coarse-grained simulations. , 2008, Biophysical journal.

[21]  M. Schick,et al.  Calculation of free energy barriers to the fusion of small vesicles. , 2008, Biophysical journal.

[22]  Carsten Kutzner,et al.  GROMACS 4:  Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation. , 2008, Journal of chemical theory and computation.

[23]  L. Chernomordik,et al.  Viral and Developmental Cell Fusion Mechanisms: Conservation and Divergence , 2008, Developmental Cell.

[24]  Berk Hess,et al.  P-LINCS:  A Parallel Linear Constraint Solver for Molecular Simulation. , 2008, Journal of chemical theory and computation.

[25]  Siewert J Marrink,et al.  Pressure-area isotherm of a lipid monolayer from molecular dynamics simulations. , 2007, Langmuir : the ACS journal of surfaces and colloids.

[26]  Peter M. Kasson,et al.  Control of Membrane Fusion Mechanism by Lipid Composition: Predictions from Ensemble Molecular Dynamics , 2007, PLoS Comput. Biol..

[27]  F. Walther,et al.  Structure of mini-B, a functional fragment of surfactant protein B, in detergent micelles. , 2007, Biochemistry.

[28]  Thomas Huber,et al.  G protein-coupled receptors self-assemble in dynamics simulations of model bilayers. , 2007, Journal of the American Chemical Society.

[29]  Volker Knecht,et al.  Molecular dynamics simulations of lipid vesicle fusion in atomic detail. , 2007, Biophysical journal.

[30]  D. Tieleman,et al.  The MARTINI force field: coarse grained model for biomolecular simulations. , 2007, The journal of physical chemistry. B.

[31]  M. Kozlov,et al.  How Synaptotagmin Promotes Membrane Fusion , 2007, Science.

[32]  K. Kremer,et al.  Aggregation and vesiculation of membrane proteins by curvature-mediated interactions , 2007, Nature.

[33]  Elizabeth H. Chen,et al.  Cell–cell fusion , 2007, FEBS letters.

[34]  M. Parrinello,et al.  Canonical sampling through velocity rescaling. , 2007, The Journal of chemical physics.

[35]  M. Kozlov,et al.  Membranes of the world unite! , 2006, The Journal of cell biology.

[36]  Reinhard Jahn,et al.  SNAREs — engines for membrane fusion , 2006, Nature Reviews Molecular Cell Biology.

[37]  Peter M. Kasson,et al.  Ensemble molecular dynamics yields submillisecond kinetics and intermediates of membrane fusion , 2006, Proceedings of the National Academy of Sciences.

[38]  G. Privé,et al.  Crystal structures of saposins A and C , 2006, Protein science : a publication of the Protein Society.

[39]  A F Smeijers,et al.  Coarse-grained transmembrane proteins: hydrophobic matching, aggregation, and their effect on fusion. , 2006, The journal of physical chemistry. B.

[40]  Demet Araç,et al.  Unraveling the mechanisms of synaptotagmin and SNARE function in neurotransmitter release. , 2006, Trends in cell biology.

[41]  A. J. Markvoort,et al.  A detailed look at vesicle fusion. , 2006, The journal of physical chemistry. B.

[42]  M. Jackson,et al.  Fusion pores and fusion machines in Ca2+-triggered exocytosis. , 2006, Annual review of biophysics and biomolecular structure.

[43]  M. Mueller,et al.  Field theoretic study of bilayer membrane fusion: II. Mechanism of a stalk-hole complex. , 2005, Biophysical journal.

[44]  F. Rey,et al.  Virus membrane-fusion proteins: more than one way to make a hairpin , 2006, Nature Reviews Microbiology.

[45]  A. Touhami,et al.  Liposome reconstitution of a minimal protein‐mediated membrane fusion machine , 2005, The EMBO journal.

[46]  H. Bruhn A short guided tour through functional and structural features of saposin-like proteins. , 2005, The Biochemical journal.

[47]  Siewert J Marrink,et al.  Simulation of gel phase formation and melting in lipid bilayers using a coarse grained model. , 2005, Chemistry and physics of lipids.

[48]  Reinhard Lipowsky,et al.  Tension-induced fusion of bilayer membranes and vesicles , 2005, Nature materials.

[49]  J. Johansson,et al.  Mapping and analysis of the lytic and fusogenic domains of surfactant protein B. , 2005, Biochemistry.

[50]  A. Mark,et al.  Molecular view of hexagonal phase formation in phospholipid membranes. , 2004, Biophysical journal.

[51]  Marcus Mueller,et al.  Field theoretic study of bilayer membrane fusion , 2004 .

[52]  M. Mueller,et al.  Field theoretic study of bilayer membrane fusion. I. Hemifusion mechanism. , 2003, Biophysical journal.

[53]  M. Kozlov,et al.  Protein-lipid interplay in fusion and fission of biological membranes. , 2003, Annual review of biochemistry.

[54]  Siewert J Marrink,et al.  The mechanism of vesicle fusion as revealed by molecular dynamics simulations. , 2003, Journal of the American Chemical Society.

[55]  L. Tamm Hypothesis: spring-loaded boomerang mechanism of influenza hemagglutinin-mediated membrane fusion. , 2003, Biochimica et biophysica acta.

[56]  Thomas B Woolf,et al.  Insights into the molecular mechanism of membrane fusion from simulation: evidence for the association of splayed tails. , 2003, Physical review letters.

[57]  M. Müller,et al.  A new mechanism of model membrane fusion determined from Monte Carlo simulation. , 2002, Biophysical journal.

[58]  J. Whitsett,et al.  Hydrophobic surfactant proteins in lung function and disease. , 2002, The New England journal of medicine.

[59]  D Peter Tieleman,et al.  Molecular dynamics simulation of spontaneous membrane fusion during a cubic-hexagonal phase transition. , 2002, Biophysical journal.

[60]  Yonathan Kozlovsky,et al.  Lipid intermediates in membrane fusion: formation, structure, and decay of hemifusion diaphragm. , 2002, Biophysical journal.

[61]  Yonathan Kozlovsky,et al.  Stalk model of membrane fusion: solution of energy crisis. , 2002, Biophysical journal.

[62]  Hiroshi Noguchi,et al.  Fusion pathways of vesicles: A Brownian dynamics simulation , 2001 .

[63]  Lukas K. Tamm,et al.  Membrane structure and fusion-triggering conformational change of the fusion domain from influenza hemagglutinin , 2001, Nature Structural Biology.

[64]  F S Cohen,et al.  A quantitative model for membrane fusion based on low-energy intermediates , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[65]  J. Whitsett,et al.  Lamellar Body Formation in Normal and Surfactant Protein B-Deficient Fetal Mice , 2000, Laboratory Investigation.

[66]  R. Duncan,et al.  A new class of fusion‐associated small transmembrane (FAST) proteins encoded by the non‐enveloped fusogenic reoviruses , 2000, The EMBO journal.

[67]  M. Derrick,et al.  Structure and properties of surfactant protein B. , 1998, Biochimica et biophysica acta.

[68]  M. Kozlov,et al.  A mechanism of protein-mediated fusion: coupling between refolding of the influenza hemagglutinin and lipid rearrangements. , 1998, Biophysical journal.

[69]  Gottfried Otting,et al.  Saposin fold revealed by the NMR structure of NK-lysin , 1997, Nature Structural Biology.

[70]  Berk Hess,et al.  LINCS: A linear constraint solver for molecular simulations , 1997, J. Comput. Chem..

[71]  B. Lentz,et al.  Evolution of lipidic structures during model membrane fusion and the relation of this process to cell membrane fusion. , 1997, Biochemistry.

[72]  B. Stripp,et al.  Targeted disruption of the surfactant protein B gene disrupts surfactant homeostasis, causing respiratory failure in newborn mice. , 1995, Proceedings of the National Academy of Sciences of the United States of America.

[73]  H. Jörnvall,et al.  An amphipathic helical motif common to tumourolytic polypeptide NK‐lysin and pulmonary surfactant polypeptide SP‐B , 1995, FEBS letters.

[74]  C. Casals,et al.  Conformational flexibility of pulmonary surfactant proteins SP-B and SP-C, studied in aqueous organic solvents. , 1995, Biochimica et biophysica acta.

[75]  H. Colten,et al.  Ultrastructure of lung in surfactant protein B deficiency. , 1994, American journal of respiratory cell and molecular biology.

[76]  K. Wüthrich,et al.  The NMR structure of the pulmonary surfactant-associated polypeptide SP-C in an apolar solvent contains a valyl-rich alpha-helix. , 1994, Biochemistry.

[77]  H. Colten,et al.  A mutation in the surfactant protein B gene responsible for fatal neonatal respiratory disease in multiple kindreds. , 1994, The Journal of clinical investigation.

[78]  D. Siegel,et al.  Energetics of intermediates in membrane fusion: comparison of stalk and inverted micellar intermediate mechanisms. , 1993, Biophysical journal.

[79]  H. Geuze,et al.  Intracellular processing of pulmonary surfactant protein B in an endosomal/lysosomal compartment. , 1992, The American journal of physiology.

[80]  H. Haagsman,et al.  Lipid mixing is mediated by the hydrophobic surfactant protein SP-B but not by SP-C. , 1992, Biochimica et biophysica acta.

[81]  M. Williams,et al.  Effects of surfactant apolipoproteins on liposome structure: implications for tubular myelin formation. , 1992, The American journal of physiology.

[82]  L. Patthy Homology of the precursor of pulmonary surfactant-associated protein SP-B with prosaposin and sulfated glycoprotein 1. , 1991, The Journal of biological chemistry.

[83]  V. Parsegian,et al.  Hydration forces between phospholipid bilayers , 1989 .

[84]  K. Kogishi,et al.  Reconstitution of tubular myelin from synthetic lipids and proteins associated with pig pulmonary surfactant. , 1989, The American review of respiratory disease.

[85]  F. Possmayer A proposed nomenclature for pulmonary surfactant-associated proteins. , 1988, The American review of respiratory disease.

[86]  J. Johansson,et al.  Size and structure of the hydrophobic low molecular weight surfactant-associated polypeptide. , 1988, Biochemistry.

[87]  J. Goerke,et al.  Interactions of the low molecular weight group of surfactant-associated proteins (SP 5-18) with pulmonary surfactant lipids. , 1988, Biochemistry.

[88]  L. Chernomordik,et al.  Biomembrane fusion: a new concept derived from model studies using two interacting planar lipid bilayers. , 1987, Biochimica et biophysica acta.

[89]  H. Berendsen,et al.  Molecular dynamics with coupling to an external bath , 1984 .

[90]  Kozlov Mm,et al.  Possible mechanism of membrane fusion , 1983 .

[91]  M. Kozlov,et al.  [Possible mechanism of membrane fusion]. , 1983, Biofizika.

[92]  J. Zimmerberg,et al.  Fusion of phospholipid vesicles with planar phospholipid bilayer membranes. II. Incorporation of a vesicular membrane marker into the planar membrane , 1980, The Journal of general physiology.

[93]  F S Cohen,et al.  Fusion of phospholipid vesicles with planar phospholipid bilayer membranes. I. Discharge of vesicular contents across the planar membrane , 1980, The Journal of general physiology.

[94]  W. Helfrich Elastic Properties of Lipid Bilayers: Theory and Possible Experiments , 1973, Zeitschrift fur Naturforschung. Teil C: Biochemie, Biophysik, Biologie, Virologie.