Physical map of the Clostridium beijerinckii (formerly Clostridium acetobutylicum) NCIMB 8052 chromosome

A combined physical and genetic map of the single, circular, 6.7-Mbp chromosome of the NCIMB 8052 strain of Clostridium beijerinckii (formerly Clostridium acetobutylicum) has been constructed by using a combination of cloned DNA fragments as hybridization probes and a bank of strains harboring insertions of the conjugative transposon Tn1545. The positions of 81 restriction endonuclease cleavage sites and 32 genes have been determined. Eight genes concerned with solventogenic fermentation are found at three different locations. The chromosome contains at least 13 rrn operons, 11 of which have been located on the map. Their transcriptional orientation diverges from the presumed location of the replication origin.

[1]  J. Meyer Cloning and sequencing of the gene encoding the [2Fe-2S] ferredoxin from Clostridium pasteurianum. , 1993, Biochimica et biophysica acta.

[2]  M. Young,et al.  Recent advances in the genetics of the clostridia. , 1989, FEMS microbiology reviews.

[3]  S. Cole,et al.  Genomic diversity and organization of virulence genes in the pathogenic anaerobe Clostridium perfringens , 1992, Molecular microbiology.

[4]  R. O'brien,et al.  Oxygen and the growth and metabolism of Clostridium acetobutylicum. , 1971, Journal of general microbiology.

[5]  R. Losick,et al.  Bacillus Subtilis and Other Gram-Positive Bacteria: Biochemistry, Physiology, and Molecular Genetics , 1993 .

[6]  D. Henner,et al.  An SfiI restriction map of the Bacillus subtilis 168 genome. , 1991, Gene.

[7]  M. Riley,et al.  Organization of the bacterial chromosome , 1990, Microbiological reviews.

[8]  C. Carlier,et al.  Physical analysis of the conjugative shuttle transposon Tn1545. , 1987, Plasmid.

[9]  I. Bancroft,et al.  Physical and genetic maps of the genome of the heterocyst-forming cyanobacterium Anabaena sp. strain PCC 7120 , 1989, Journal of bacteriology.

[10]  S. Ehrlich,et al.  A general method for cloning recA genes of gram-positive bacteria by polymerase chain reaction , 1992, Journal of bacteriology.

[11]  M. Young,et al.  Transfer of Tn1545 and Tn916 to Clostridium acetobutylicum. , 1989, Plasmid.

[12]  T. A. Roberts,et al.  Taxonomic studies on a psychrophilic Clostridium from vacuum-packed beef: description of Clostridium estertheticum sp. nov. , 1992, FEMS microbiology letters.

[13]  N. Minton,et al.  Introduction of plasmids into whole cells of Clostridium acetobutylicum by electroporation , 1988 .

[14]  G. Baranton,et al.  Linear chromosome of Borrelia burgdorferi. , 1989, Research in microbiology.

[15]  D. R. Woods,et al.  The Clostridia and biotechnology , 1993 .

[16]  E. Papoutsakis,et al.  Expression of Cloned Homologous Fermentative Genes in Clostridium Acetobutylicum ATCC 824 , 1992, Bio/Technology.

[17]  R. Zuerner,et al.  Comparison of genetic maps for two Leptospira interrogans serovars provides evidence for two chromosomes and intraspecies heterogeneity , 1993, Journal of bacteriology.

[18]  B. J. Brewer,et al.  When polymerases collide: Replication and the transcriptional organization of the E. coli chromosome , 1988, Cell.

[19]  M. Itaya,et al.  Complete physical map of the Bacillus subtilis 168 chromosome constructed by a gene-directed mutagenesis method. , 1991, Journal of molecular biology.

[20]  D. Hopwood,et al.  The chromosomal DNA of Streptomyces lividans 66 is linear , 1993, Molecular microbiology.

[21]  J. Cullum,et al.  Physical map of the Streptomyces lividans 66 genome and comparison with that of the related strain Streptomyces coelicolor A3(2) , 1993, Journal of bacteriology.

[22]  J. Morris,et al.  Stability of solvent production by Clostridium acetobutylicum in continuous culture: strain differences , 1990 .

[23]  A. Kolstø,et al.  Physical map of the Bacillus cereus chromosome , 1990, Journal of bacteriology.

[24]  C. Carlson,et al.  Physical maps of the genomes of three Bacillus cereus strains , 1992, Journal of bacteriology.

[25]  Megabase-sized linear DNA in the bacterium Borrelia burgdorferi, the Lyme disease agent. , 1989, Proceedings of the National Academy of Sciences of the United States of America.

[26]  J. Meyer,et al.  Cloning, sequencing and expression in Escherichia coli of the rubredoxin gene from Clostridium pasteurianum. , 1992, The Biochemical journal.

[27]  S. Cole,et al.  Bacterial genomics. , 1994, FEMS microbiology reviews.

[28]  S. Cole,et al.  Cloning, mapping, and molecular characterization of the rRNA operons of Clostridium perfringens , 1991, Journal of bacteriology.

[29]  D. T. Jones,et al.  Acetone-butanol fermentation revisited. , 1986, Microbiological reviews.

[30]  L. Karayan,et al.  Presence of one linear and one circular chromosome in the Agrobacterium tumefaciens C58 genome , 1993, Journal of bacteriology.

[31]  D. Schwartz,et al.  Separation of yeast chromosome-sized DNAs by pulsed field gradient gel electrophoresis , 1984, Cell.

[32]  C. Carlson,et al.  A complete physical map of a Bacillus thuringiensis chromosome , 1993, Journal of bacteriology.

[33]  M. Young,et al.  Conjugative plasmid transfer from Escherichia coli to Clostridium acetobutylicum. , 1990, Journal of general microbiology.

[34]  H. Bahl,et al.  Molecular characterization of the dnaK gene region of Clostridium acetobutylicum, including grpE, dnaJ, and a new heat shock gene , 1992, Journal of bacteriology.

[35]  P. Trieu-Cuot,et al.  Plasmid transfer by conjugation from Escherichia coli to Gram‐positive bacteria , 1987 .

[36]  D. T. Jones,et al.  Homology between hydroxybutyryl and hydroxyacyl coenzyme A dehydrogenase enzymes from Clostridium acetobutylicum fermentation and vertebrate fatty acid beta-oxidation pathways , 1989, Journal of bacteriology.

[37]  M. Montagu,et al.  Fasciation induction by the phytopathogen Rhodococcus fascians depends upon a linear plasmid encoding a cytokinin synthase gene. , 1992, The EMBO journal.

[38]  R. W. Davis,et al.  Separation of large DNA molecules by contour-clamped homogeneous electric fields. , 1986, Science.

[39]  D. Hopwood,et al.  A combined genetic and physical map of the Streptomyces coelicolor A3(2) chromosome , 1992, Journal of bacteriology.

[40]  J. Morris The clostridia and biotechnology. , 1993, Biotechnology.

[41]  E. R. Kashket,et al.  Isolation of a Degeneration-Resistant Mutant of Clostridium acetobutylicum NCIMB 8052 , 1993, Applied and environmental microbiology.

[42]  G. Bennett,et al.  Cloning of the Clostridium acetobutylicum ATCC 824 acetyl coenzyme A acetyltransferase (thiolase; EC 2.3.1.9) gene , 1991, Applied and environmental microbiology.

[43]  E. Papoutsakis,et al.  Cloning and expression of Clostridium acetobutylicum phosphotransbutyrylase and butyrate kinase genes in Escherichia coli , 1988, Journal of bacteriology.

[44]  H. Hennecke,et al.  Correlated physical and genetic map of the Bradyrhizobium japonicum 110 genome , 1993, Journal of bacteriology.

[45]  C. Cantor,et al.  Purification, specific fragmentation, and separation of large DNA molecules. , 1987, Methods in enzymology.

[46]  G. Bennett,et al.  Purification of acetoacetate decarboxylase from Clostridium acetobutylicum ATCC 824 and cloning of the acetoacetate decarboxylase gene in Escherichia coli , 1990, Applied and environmental microbiology.

[47]  J. Sambrook,et al.  Molecular Cloning: A Laboratory Manual , 2001 .

[48]  M. Young,et al.  Targeted integration of genes into the Clostridium acetobutylicum chromosome , 1994 .

[49]  G. Bennett,et al.  Sequence and arrangement of genes encoding enzymes of the acetone-production pathway of Clostridium acetobutylicum ATCC824. , 1993, Gene.

[50]  D. Hanahan Studies on transformation of Escherichia coli with plasmids. , 1983, Journal of molecular biology.

[51]  J. Paillisson,et al.  Presence of two independent chromosomes in the Brucella melitensis 16M genome , 1993, Journal of bacteriology.

[52]  S. Cole,et al.  Genome organization of the anaerobic pathogen Clostridium perfringens. , 1989, Proceedings of the National Academy of Sciences of the United States of America.

[53]  M. Young,et al.  Wide diversity of genome size among different strains of Clostridium acetobutylicum , 1993 .

[54]  G. Del Sal,et al.  A one-tube plasmid DNA mini-preparation suitable for sequencing. , 1988, Nucleic acids research.

[55]  A. Pospiech,et al.  A physical and genetic map of the Stigmatella aurantiaca DW4/3.1 chromosome , 1993, Molecular microbiology.

[56]  A. Kuspa,et al.  Physical map of the Myxococcus xanthus chromosome , 1991, Journal of bacteriology.

[57]  H. Bahl,et al.  Cloning, sequencing, and molecular analysis of the groESL operon of Clostridium acetobutylicum , 1992, Journal of bacteriology.