Time-resolved Measurements of Intracellular ATP in the Yeast Saccharomyces cerevisiae using a New Type of Nanobiosensor*

Adenosine 5′-triphosphate is a universal molecule in all living cells, where it functions in bioenergetics and cell signaling. To understand how the concentration of ATP is regulated by cell metabolism and in turn how it regulates the activities of enzymes in the cell it would be beneficial if we could measure ATP concentration in the intact cell in real time. Using a novel aptamer-based ATP nanosensor, which can readily monitor intracellular ATP in eukaryotic cells with a time resolution of seconds, we have performed the first on-line measurements of the intracellular concentration of ATP in the yeast Saccharomyces cerevisiae. These ATP measurements show that the ATP concentration in the yeast cell is not stationary. In addition to an oscillating ATP concentration, we also observe that the concentration is high in the starved cells and starts to decrease when glycolysis is induced. The decrease in ATP concentration is shown to be caused by the activity of membrane-bound ATPases such as the mitochondrial F0F1 ATPase-hydrolyzing ATP and the plasma membrane ATPase (PMA1). The activity of these two ATPases are under strict control by the glucose concentration in the cell. Finally, the measurements of intracellular ATP suggest that 2-deoxyglucose (2-DG) may have more complex function than just a catabolic block. Surprisingly, addition of 2-DG induces only a moderate decline in ATP. Furthermore, our results suggest that 2-DG may inhibit the activation of PMA1 after addition of glucose.

[1]  Anja Voigt,et al.  Glucose restriction extends Caenorhabditis elegans life span by inducing mitochondrial respiration and increasing oxidative stress. , 2007, Cell metabolism.

[2]  Takeharu Nagai,et al.  Visualization of ATP levels inside single living cells with fluorescence resonance energy transfer-based genetically encoded indicators , 2009, Proceedings of the National Academy of Sciences.

[3]  M. Kleerebezem,et al.  In vivo nuclear magnetic resonance studies of glycolytic kinetics in Lactococcus lactis. , 1999, Biotechnology and bioengineering.

[4]  Jörn Glökler,et al.  Nonradioactive fluorescence microtiter plate assay monitoring aptamer selections. , 2007, BioTechniques.

[5]  L. Olsen,et al.  Single cell studies and simulation of cell-cell interactions using oscillating glycolysis in yeast cells. , 2007, Biophysical chemistry.

[6]  G. Carmignoto,et al.  Neurone‐to‐astrocyte signalling in the brain represents a distinct multifunctional unit , 2004, The Journal of physiology.

[7]  John Leyden. Webb,et al.  Enzyme and metabolic inhibitors , 1963 .

[8]  M. Herve,et al.  Non-cooperative effects of glucose and 2-deoxyglucose on their metabolism in Saccharomyces cerevisiae studied by 1H-NMR and 13C-NMR spectroscopy. , 1993, European journal of biochemistry.

[9]  D. Bunka,et al.  Aptamers come of age – at last , 2006, Nature Reviews Microbiology.

[10]  H V Westerhoff,et al.  Sustained oscillations in free‐energy state and hexose phosphates in yeast , 1996, Yeast.

[11]  J. B. Pitner,et al.  Using receptor conformational change to detect low molecular weight analytes by surface plasmon resonance. , 2001, Analytical chemistry.

[12]  L. Olsen,et al.  Sustained glycolytic oscillations--no need for cyanide. , 2004, FEMS microbiology letters.

[13]  M. Espelund,et al.  A simple method for generating single-stranded DNA probes labeled to high activities. , 1990, Nucleic acids research.

[14]  C. Slayman,et al.  Tandem Phosphorylation of Ser-911 and Thr-912 at the C Terminus of Yeast Plasma Membrane H+-ATPase Leads to Glucose-dependent Activation* , 2007, Journal of Biological Chemistry.

[15]  Ioanis Katakis,et al.  Aptamers: molecular tools for analytical applications , 2008, Analytical and bioanalytical chemistry.

[16]  Sune Danø,et al.  Dynamical quorum sensing: Population density encoded in cellular dynamics , 2007, Proceedings of the National Academy of Sciences.

[17]  F. Hynne,et al.  Full-scale model of glycolysis in Saccharomyces cerevisiae. , 2001, Biophysical chemistry.

[18]  Hans V. Westerhoff,et al.  Synchrony and mutual stimulation of yeast cells during fast glycolytic oscillations , 1992 .

[19]  H. Fromm,et al.  Kinetic studies of yeast hexokinase. , 1962, The Journal of biological chemistry.

[20]  J. Haber,et al.  Membrane potential defect in hygromycin B-resistant pma1 mutants of Saccharomyces cerevisiae. , 1988, The Journal of biological chemistry.

[21]  Jim Berg,et al.  A genetically encoded fluorescent reporter of ATP/ADP ratio , 2008, Nature Methods.

[22]  E. Pye,et al.  Cell density dependence of oscillatory metabolism , 1976, Nature.

[23]  M. Webb,et al.  Fluorescence changes , nucleotide affinities , and binding dynamics of different tetramethylrhodamine-labeled ParMmutants , 2010 .

[24]  D. Harris Azide as a probe of co-operative interactions in the mitochondrial F1-ATPase. , 1989, Biochimica et biophysica acta.

[25]  L. Olsen,et al.  Aptamers embedded in polyacrylamide nanoparticles: a tool for in vivo metabolite sensing. , 2010, ACS nano.

[26]  L. Olsen,et al.  Regulation of glycolytic oscillations by mitochondrial and plasma membrane H+-ATPases. , 2009, Biophysical journal.

[27]  H. Lehrach,et al.  A catabolic block does not sufficiently explain how 2-deoxy-d-glucose inhibits cell growth , 2008, Proceedings of the National Academy of Sciences.

[28]  Sune Danø,et al.  On the mechanisms of glycolytic oscillations in yeast , 2005, The FEBS journal.

[29]  P. Richard,et al.  The rhythm of yeast. , 2003, FEMS microbiology reviews.

[30]  J. M. Arbeit,et al.  Selective depletion of tumor ATP by 2-deoxyglucose and insulin, detected by 31P magnetic resonance spectroscopy. , 1992, Cancer research.

[31]  R. Jerome,et al.  Enzyme Immobilization in Nanoparticles Produced by Inverse Microemulsion Polymerization , 1994 .

[32]  M. Strano,et al.  A luciferase/single-walled carbon nanotube conjugate for near-infrared fluorescent detection of cellular ATP. , 2010, Angewandte Chemie.

[33]  Ramón Serrano,et al.  In vivo glucose activation of the yeast plasma membrane ATPase , 1983, FEBS letters.

[34]  W. Tan,et al.  Aptamer switch probe based on intramolecular displacement. , 2008, Journal of the American Chemical Society.

[35]  P. Komlósi,et al.  ATP as a mediator of macula densa cell signalling , 2009, Purinergic Signalling.

[36]  G. Burnstock,et al.  Purinoceptors on Neuroglia , 2009, Molecular Neurobiology.

[37]  Richard Bertram,et al.  Interaction of glycolysis and mitochondrial respiration in metabolic oscillations of pancreatic islets. , 2007, Biophysical journal.

[38]  R. Stoltenburg,et al.  FluMag-SELEX as an advantageous method for DNA aptamer selection , 2005, Analytical and bioanalytical chemistry.

[39]  K. Hara,et al.  An Efficient Method for Quantitative Determination of Cellular ATP Synthetic Activity , 2006, Journal of biomolecular screening.

[40]  A. Krost,et al.  Spatial control of the energy metabolism of yeast cells through electrolytic generation of oxygen , 2009, Physical biology.

[41]  L. Olsen,et al.  On‐line measurements of oscillating mitochondrial membrane potential in glucose‐fermenting Saccharomyces cerevisiae , 2007, Yeast.

[42]  A. Viarengo,et al.  A rapid HPLC method for determination of adenylate energy charge , 1986, Experientia.

[43]  M. Webb,et al.  A Biosensor for Fluorescent Determination of ADP with High Time Resolution* , 2009, The Journal of Biological Chemistry.