The application of Raman spectroscopy for the detection and identification of microorganisms

A fast and reliable detection and identification of microorganisms is crucial in environmental science, for food quality as well as medical diagnosis. In these fields, all types of Raman spectroscopy are gaining more and more importance during the last years. The review provides an extensive overview of recent research, technical expertise, and scientific findings based on Raman spectroscopic detection and identification of microorganisms within the years 2010 and 2015, demonstrating the diverse capability of Raman spectroscopy as a modern analytical tool. Raman spectroscopy distinguishes itself from other currently applied techniques by its easy application at low cost, its high speed of analysis, and its broad information content on both the chemical composition and the structure of biomolecules within the microorganisms. Slight chances in the chemical composition of microorganisms can be monitored by means of Raman spectroscopy and used to differentiate genera, species, or even strains. Detection of pathogens is possible from complex matrices, such as soil, food, and body fluids. Further, spectroscopic studies of host–pathogen interactions are addressed as well as the effect of antibiotics on bacteria. Copyright © 2015 John Wiley & Sons, Ltd.

[1]  Joseph Maria Kumar Irudayaraj,et al.  Silver Nanosphere SERS Probes for Sensitive Identification of Pathogens , 2010 .

[2]  J. Jehlička,et al.  Raman spectroscopy in halophile research , 2013, Front. Microbiol..

[3]  C. Ehrhardt,et al.  Forensic differentiation of Bacillus cereus spores grown using different culture media using Raman spectroscopy , 2015, Analytical and Bioanalytical Chemistry.

[4]  J. Popp,et al.  Vibrational spectroscopy—A powerful tool for the rapid identification of microbial cells at the single‐cell level , 2009, Cytometry. Part A : the journal of the International Society for Analytical Cytology.

[5]  Wayne W. Smith,et al.  Selective detection of 1000 B. anthracis spores within 15 minutes using a peptide functionalized SERS assay. , 2014, The Analyst.

[6]  J Popp,et al.  Micro-Raman spectroscopic identification of bacterial cells of the genus Staphylococcus and dependence on their cultivation conditions. , 2005, The Analyst.

[7]  Dorothea K. Thompson,et al.  Intracellularly grown gold nanoislands as SERS substrates for monitoring chromate, sulfate and nitrate localization sites in remediating bacteria biofilms by Raman chemical imaging. , 2012, Analytica chimica acta.

[8]  Royston Goodacre,et al.  Fourier transform infrared and Raman spectroscopies for the rapid detection, enumeration, and growth interaction of the bacteria Staphylococcus aureus and Lactococcus lactis ssp. cremoris in milk. , 2011, Analytical chemistry.

[9]  J. Popp,et al.  Toward culture-free Raman spectroscopic identification of pathogens in ascitic fluid. , 2015, Analytical chemistry.

[10]  Mark A. Thornton,et al.  Raman Spectroscopy and Chemometrics for Identification and Strain Discrimination of the Wine Spoilage Yeasts Saccharomyces cerevisiae, Zygosaccharomyces bailii, and Brettanomyces bruxellensis , 2013, Applied and Environmental Microbiology.

[11]  J. Muller,et al.  Degradation of cyanobacterial biosignatures by ionizing radiation. , 2011, Astrobiology.

[12]  A. Gigler,et al.  Sub-Micrometer-Scale Mapping of Magnetite Crystals and Sulfur Globules in Magnetotactic Bacteria Using Confocal Raman Micro-Spectrometry , 2014, PloS one.

[13]  Pavel Zemánek,et al.  Following the Mechanisms of Bacteriostatic versus Bactericidal Action Using Raman Spectroscopy , 2013, Molecules.

[14]  Tasnim Munshi,et al.  Destruction of Raman biosignatures by ionising radiation and the implications for life detection on Mars , 2012, Analytical and Bioanalytical Chemistry.

[15]  Jürgen Popp,et al.  Raman spectroscopic detection of Nickel impact on single Streptomyces cells – possible bioindicators for heavy metal contamination , 2012 .

[16]  Yiping Zhao,et al.  Rapid and Sensitive Detection of Rotavirus Molecular Signatures Using Surface Enhanced Raman Spectroscopy , 2010, PloS one.

[17]  Jean-Marc Dinten,et al.  Single bacteria identification by Raman spectroscopy , 2014, Journal of biomedical optics.

[18]  J. Chen,et al.  Culture-free diagnostics of Pseudomonas aeruginosa infection by silver nanorod array based SERS from clinical sputum samples. , 2014, Nanomedicine : nanotechnology, biology, and medicine.

[19]  A. Schintlmeister,et al.  Tracking heavy water (D2O) incorporation for identifying and sorting active microbial cells , 2014, Proceedings of the National Academy of Sciences.

[20]  Jochen Arlt,et al.  Intracellular imaging of host‐pathogen interactions using combined CARS and two‐photon fluorescence microscopies , 2010, Journal of biophotonics.

[21]  Jürgen Popp,et al.  Raman Spectroscopy as a Potential Tool for Detection of Brucella spp. in Milk , 2012, Applied and Environmental Microbiology.

[22]  D. E. Aston,et al.  Detection of Receptor-Induced Glycoprotein Conformational Changes on Enveloped Virions by Using Confocal Micro-Raman Spectroscopy , 2013, Journal of Virology.

[23]  P. Bartlett,et al.  Using surface-enhanced Raman spectroscopy and electrochemically driven melting to discriminate Yersinia pestis from Y. pseudotuberculosis based on single nucleotide polymorphisms within unpurified polymerase chain reaction amplicons. , 2015, Analytical chemistry.

[24]  Xiaonan Lu,et al.  Application of Mid-infrared and Raman Spectroscopy to the Study of Bacteria , 2011 .

[25]  James W. Chan,et al.  Evaluation of Escherichia coli Cell Response to Antibiotic Treatment by Use of Raman Spectroscopy with Laser Tweezers , 2010, Journal of Clinical Microbiology.

[26]  H. Edwards,et al.  Bacterioruberin and salinixanthin carotenoids of extremely halophilic Archaea and Bacteria: a Raman spectroscopic study. , 2013, Spectrochimica acta. Part A, Molecular and biomolecular spectroscopy.

[27]  Jürgen Popp,et al.  Identification of vancomycin interaction with Enterococcus faecalis within 30 min of interaction time using Raman spectroscopy , 2015, Analytical and Bioanalytical Chemistry.

[28]  Jürgen Popp,et al.  Combined dielectrophoresis-Raman setup for the classification of pathogens recovered from the urinary tract. , 2013, Analytical chemistry.

[29]  W. Fritzsche,et al.  Detection of vancomycin resistances in enterococci within 3 ½ hours , 2015, Scientific Reports.

[30]  J. Popp,et al.  Raman spectroscopic differentiation of planktonic bacteria and biofilms , 2015, Analytical and Bioanalytical Chemistry.

[31]  Jürgen Popp,et al.  Raman spectroscopic detection of physiology changes in plasmid-bearing Escherichia coli with and without antibiotic treatment , 2011, Analytical and bioanalytical chemistry.

[32]  A. I. Athamneh,et al.  Near-Real-Time Analysis of the Phenotypic Responses of Escherichia coli to 1-Butanol Exposure Using Raman Spectroscopy , 2014, Journal of bacteriology.

[33]  P. Fowler,et al.  Stable isotope probing and Raman spectroscopy for monitoring carbon flow in a food chain and revealing metabolic pathway. , 2013, Analytical chemistry.

[34]  J. Popp,et al.  Raman spectroscopic monitoring of the growth of pigmented and non-pigmented mycobacteria , 2015, Analytical and Bioanalytical Chemistry.

[35]  Shona Stewart,et al.  Raman spectroscopy and chemical imaging for quantification of filtered waterborne bacteria. , 2006, Journal of microbiological methods.

[36]  C. Hu,et al.  Rapid (<5 min) Identification of Pathogen in Human Blood by Electrokinetic Concentration and Surface-Enhanced Raman Spectroscopy , 2013, Scientific Reports.

[37]  J. Popp,et al.  Bioanalytical application of surface‐ and tip‐enhanced Raman spectroscopy , 2012 .

[38]  T. Kang,et al.  Combining a nanowire SERRS sensor and a target recycling reaction for ultrasensitive and multiplex identification of pathogenic fungi. , 2011, Small.

[39]  P. Abete,et al.  Raman spectroscopy as a new tool for early detection of bacteria in patients with cystic fibrosis , 2013 .

[40]  Samjin Choi,et al.  Label-free biochemical analytic method for the early detection of adenoviral conjunctivitis using human tear biofluids. , 2014, Analytical Chemistry.

[41]  W. Abraham Applications and impacts of stable isotope probing for analysis of microbial interactions , 2014, Applied Microbiology and Biotechnology.

[42]  Adrian D. C. Chan,et al.  Identification of Listeria Species Using a Low-Cost Surface-Enhanced Raman Scattering System With Wavelet-Based Signal Processing , 2009, IEEE Transactions on Instrumentation and Measurement.

[43]  J. Popp,et al.  Raman Spectroscopy-Compatible Inactivation Method for Pathogenic Endospores , 2010, Applied and Environmental Microbiology.

[44]  B. V. Bronk,et al.  Silver Colloids Impregnating or Coating Bacteria , 1998 .

[45]  Duncan Graham,et al.  Simultaneous detection and quantification of three bacterial meningitis pathogens by SERS , 2014 .

[46]  W. Xie,et al.  Medical applications of surface-enhanced Raman scattering. , 2013, Physical chemistry chemical physics : PCCP.

[47]  J. Irudayaraj,et al.  SERS driven cross-platform based multiplex pathogen detection , 2011 .

[48]  R. Dluhy,et al.  Identification of mycobacteria based on spectroscopic analyses of mycolic acid profiles. , 2013, The Analyst.

[49]  J. Jehlička,et al.  Use of a handheld Raman spectrometer for fast screening of microbial pigments in cultures of halophilic microorganisms and in microbial communities in hypersaline environments in nature , 2013 .

[50]  Nicholas I Smith,et al.  Raman spectroscopic analysis of malaria disease progression via blood and plasma samples. , 2013, The Analyst.

[51]  Kong-Thon Tsen,et al.  Prospects for a novel ultrashort pulsed laser technology for pathogen inactivation , 2012, Journal of Biomedical Science.

[52]  M. Baesso,et al.  Are metabolites of Fusarium oxysporum responsible for fungal skin invasion? A morphological and Raman spectroscopy monitoring , 2014 .

[53]  J. Popp,et al.  Raman spectroscopic detection and identification of Burkholderia mallei and Burkholderia pseudomallei in feedstuff , 2014, Analytical and Bioanalytical Chemistry.

[54]  H. Byrne,et al.  Improved protocols for vibrational spectroscopic analysis of body fluids , 2014, Journal of biophotonics.

[55]  G Thouand,et al.  Raman spectroscopy applied to the horizontal methods ISO 6579:2002 to identify Salmonella spp. in the food industry , 2014, Analytical and Bioanalytical Chemistry.

[56]  Jürgen Popp,et al.  Rapid, culture-independent, optical diagnostics of centrifugally captured bacteria from urine samples. , 2015, Biomicrofluidics.

[57]  K. Maquelin,et al.  Proof of Principle for Successful Characterization of Methicillin-Resistant Coagulase-Negative Staphylococci Isolated from Skin by Use of Raman Spectroscopy and Pulsed-Field Gel Electrophoresis , 2009, Journal of Clinical Microbiology.

[58]  Jürgen Popp,et al.  Isolation and identification of bacteria by means of Raman spectroscopy. , 2015, Advanced drug delivery reviews.

[59]  P. Setlow,et al.  Direct analysis of water content and movement in single dormant bacterial spores using confocal Raman microspectroscopy and Raman imaging. , 2013, Analytical chemistry.

[60]  J. Coates,et al.  Surfaceomics and surface‐enhanced Raman spectroscopy of environmental microbes: Matching cofactors with redox‐active surface proteins , 2013, Proteomics.

[61]  Costas Pitris,et al.  A novel method for urinary tract infection diagnosis and antibiogram using Raman spectroscopy , 2010 .

[62]  Jacek Waluk,et al.  Nanostructured silver-gold bimetallic SERS substrates for selective identification of bacteria in human blood. , 2014, The Analyst.

[63]  Andrew J Berger,et al.  Identification of different bacterial species in biofilms using confocal Raman microscopy. , 2010, Journal of biomedical optics.

[64]  T. Smijs,et al.  Detection and differentiation of causative organisms of onychomycosis in an ex vivo nail model by means of Raman spectroscopy , 2014, Journal of the European Academy of Dermatology and Venereology : JEADV.

[65]  J. Popp,et al.  Isolation and enrichment of pathogens with a surface-modified aluminium chip for Raman spectroscopic applications. , 2013, Chemphyschem : a European journal of chemical physics and physical chemistry.

[66]  Chao Wang,et al.  Analytical characterization using surface-enhanced Raman scattering (SERS) and microfluidic sampling , 2015, Nanotechnology.

[67]  P. Visscher,et al.  Evidence for arsenic metabolism and cycling by microorganisms 2.7 billion years ago , 2014 .

[68]  Costas Pitris,et al.  A Novel Method for Bacterial UTI Diagnosis Using Raman Spectroscopy , 2012 .

[69]  Jürgen Popp,et al.  How to pre-process Raman spectra for reliable and stable models? , 2011, Analytica chimica acta.

[70]  Jürgen Popp,et al.  SERS: a versatile tool in chemical and biochemical diagnostics , 2008, Analytical and bioanalytical chemistry.

[71]  Il-Hoon Cho,et al.  Membrane filter-assisted surface enhanced Raman spectroscopy for the rapid detection of E. coli O157:H7 in ground beef. , 2015, Biosensors & bioelectronics.

[72]  Elina Dadu,et al.  Raman Spectroscopic Signatures of Echovirus 1 Uncoating , 2014, Journal of Virology.

[73]  A. Wesełucha-Birczyńska,et al.  Clostridium difficile the hospital plague. , 2015, The Analyst.

[74]  Zhiqiang Hu,et al.  Rapid detection of food- and waterborne bacteria using surface-enhanced Raman spectroscopy coupled with silver nanosubstrates , 2011, Applied Microbiology and Biotechnology.

[75]  H. Dekter,et al.  Comparison of Raman spectroscopy and two molecular diagnostic methods for Burkholderia cepacia complex species identification. , 2014, Journal of microbiological methods.

[76]  P. Vandenabeele,et al.  Pink! Why not? On the unusual colour of Évora Cathedral , 2014 .

[77]  T. B. Bakker Schut,et al.  Towards Raman‐based epidemiological typing of Pseudomonas aeruginosa , 2010, Journal of biophotonics.

[78]  J. Popp,et al.  Identification of water-conditioned Pseudomonas aeruginosa by Raman microspectroscopy on a single cell level. , 2014, Systematic and applied microbiology.

[79]  J. Popp,et al.  Identification of Bacillus anthracis via Raman spectroscopy and chemometric approaches. , 2012, Analytical chemistry.

[80]  Pavel Zemánek,et al.  Identification of individual biofilm-forming bacterial cells using Raman tweezers , 2015, Journal of biomedical optics.

[81]  Jürgen Popp,et al.  Culture independent Raman spectroscopic identification of urinary tract infection pathogens: a proof of principle study. , 2013, Analytical chemistry.

[82]  H. Edwards,et al.  Carotenes and carotenoids in natural biological samples: a Raman spectroscopic analysis , 2009 .

[83]  T. Lowenstein,et al.  Identification of carotenoids in ancient salt from Death Valley, Saline Valley, and Searles Lake, California, using laser Raman spectroscopy. , 2012, Astrobiology.

[84]  J. Madariaga,et al.  Characterization of the main colonizer and biogenic pigments present in the red biofilm from La Galea Fortress sandstone by means of microscopic observations and Raman imaging , 2015 .

[85]  Giuseppe Pesce,et al.  Raman Microspectroscopy Analysis in the Treatment of Acanthamoeba Keratitis , 2013, PloS one.

[86]  Howell G. M. Edwards,et al.  Raman Spectroscopy of Microbial Pigments , 2014, Applied and Environmental Microbiology.

[87]  Landulfo Silveira,et al.  Discrimination of selected species of pathogenic bacteria using near-infrared Raman spectroscopy and principal components analysis , 2012, Journal of biomedical optics.

[88]  Ashley J Driscoll,et al.  The development of surface-enhanced Raman scattering as a detection modality for portable in vitro diagnostics: progress and challenges. , 2013, Physical chemistry chemical physics : PCCP.

[89]  J. Popp,et al.  Assessment of two isolation techniques for bacteria in milk towards their compatibility with Raman spectroscopy. , 2011, The Analyst.

[90]  Olivier Gal,et al.  Direct identification of clinically relevant bacterial and yeast microcolonies and macrocolonies on solid culture media by Raman spectroscopy , 2014, Journal of biomedical optics.

[91]  Royston Goodacre,et al.  Portable, Quantitative Detection of Bacillus Bacterial Spores Using Surface-enhanced Raman Scattering , 2022 .

[92]  Shaw-Wei D Tsen,et al.  Ultrashort pulsed laser treatment inactivates viruses by inhibiting viral replication and transcription in the host nucleus. , 2014, Antiviral research.

[93]  Jürgen Popp,et al.  Improving chemometric results by optimizing the dimension reduction for Raman spectral data sets , 2014 .

[94]  Jürgen Popp,et al.  Identification of water pathogens by Raman microspectroscopy. , 2014, Water research.

[95]  J. Garcia-Guinea,et al.  Composition and spectra of copper-carotenoid sediments from a pyrite mine stream in Spain. , 2015, Spectrochimica acta. Part A, Molecular and biomolecular spectroscopy.

[96]  Reinhard Niessner,et al.  SERS detection of bacteria in water by in situ coating with Ag nanoparticles. , 2014, Analytical chemistry.

[97]  K. Kong,et al.  Analysis of interaction between the apicomplexan protozoan Toxoplasma gondii and host cells using label-free Raman spectroscopy. , 2015, The Analyst.

[98]  Jürgen Popp,et al.  Towards a fast, high specific and reliable discrimination of bacteria on strain level by means of SERS in a microfluidic device. , 2011, Lab on a chip.

[99]  Yunfei Xie,et al.  Label-free detection of the foodborne pathogens of Enterobacteriaceae by surface-enhanced Raman spectroscopy , 2013 .

[100]  J. Perez,et al.  Characterization of bacteria using its O-antigen with surface-enhanced Raman scattering. , 2010, The Analyst.

[101]  Ishan Barman,et al.  Raman spectroscopy provides a powerful, rapid diagnostic tool for the detection of tuberculous meningitis in ex vivo cerebrospinal fluid samples , 2013, Journal of biophotonics.

[102]  Jürgen Popp,et al.  Localizing and identifying living bacteria in an abiotic environment by a combination of Raman and fluorescence microscopy. , 2008, Analytical chemistry.

[103]  Yiping Zhao,et al.  Detection and Differentiation of Avian Mycoplasmas by Surface-Enhanced Raman Spectroscopy Based on a Silver Nanorod Array , 2011, Applied and Environmental Microbiology.

[104]  C. D. Miller,et al.  Characterization and analysis of mycobacteria and Gram-negative bacteria and co-culture mixtures by Raman microspectroscopy, FTIR, and atomic force microscopy , 2013, Analytical and Bioanalytical Chemistry.

[105]  Joseph Irudayaraj,et al.  Separation and detection of multiple pathogens in a food matrix by magnetic SERS nanoprobes , 2011, Analytical and bioanalytical chemistry.

[106]  H. Edwards,et al.  Microorganism Response to Stressed Terrestrial Environments: A Raman Spectroscopic Perspective of Extremophilic Life Strategies , 2013, Life.

[107]  R Mathey,et al.  Viability of 3h grown bacterial micro-colonies after direct Raman identification. , 2015, Journal of microbiological methods.

[108]  J. Popp,et al.  Characterization of carotenoids in soil bacteria and investigation of their photodegradation by UVA radiation via resonance Raman spectroscopy. , 2015, The Analyst.

[109]  J. Popp,et al.  Shedding light on host niches: label‐free in situ detection of Mycobacterium gordonae via carotenoids in macrophages by Raman microspectroscopy , 2015, Cellular microbiology.

[110]  H. Thatoi,et al.  Investigation on mechanism of Cr(VI) reduction and removal by Bacillus amyloliquefaciens, a novel chromate tolerant bacterium isolated from chromite mine soil. , 2014, Chemosphere.

[111]  J Popp,et al.  Raman Spectroscopic Detection of Anthrax Endospores in Powder Samples** , 2012, Angewandte Chemie.

[112]  P. Oger,et al.  In situ Raman and X‐ray spectroscopies to monitor microbial activities under high hydrostatic pressure , 2010, Annals of the New York Academy of Sciences.

[113]  A. Hernández-Martínez,et al.  Use of Raman spectroscopy to determine the kinetics of chemical transformation in yogurt production , 2013 .

[114]  Heyou Han,et al.  Streptococcus suis II immunoassay based on thorny gold nanoparticles and surface enhanced Raman scattering. , 2012, The Analyst.

[115]  Jürgen Popp,et al.  Making a big thing of a small cell--recent advances in single cell analysis. , 2014, The Analyst.

[116]  R. Camacho-Ruíz,et al.  Estimation of bacterioruberin by Raman spectroscopy during the growth of halophilic archaeon Haloarcula marismortui. , 2014, Applied optics.

[117]  J. Popp,et al.  Classification and identification of pigmented cocci bacteria relevant to the soil environment via Raman spectroscopy , 2015, Environmental Science and Pollution Research.

[118]  P. Banerjee,et al.  Development of a rapid capture-cum-detection method for Escherichia coli O157 from apple juice comprising nano-immunomagnetic separation in tandem with surface enhanced Raman scattering. , 2014, International journal of food microbiology.

[119]  G. McNay,et al.  Evaluation of a Commercially Developed Semiautomated PCR–Surface-Enhanced Raman Scattering Assay for Diagnosis of Invasive Fungal Disease , 2014, Journal of Clinical Microbiology.

[120]  Samjin Choi,et al.  Biochemical investigations of human papillomavirus‐infected cervical fluids , 2015, Microscopy research and technique.

[121]  Bosoon Park,et al.  Surface enhanced Raman scattering (SERS) with biopolymer encapsulated silver nanosubstrates for rapid detection of foodborne pathogens. , 2013, International journal of food microbiology.

[122]  Jürgen Popp,et al.  Identification of meat-associated pathogens via Raman microspectroscopy. , 2014, Food microbiology.

[123]  J. Popp,et al.  Label-free imaging and spectroscopic analysis of intracellular bacterial infections. , 2015, Analytical Chemistry.

[124]  K. Maquelin,et al.  Rapid Typing of Extended-Spectrum β-Lactamase- and Carbapenemase-Producing Escherichia coli and Klebsiella pneumoniae Isolates by Use of SpectraCell RA , 2012, Journal of Clinical Microbiology.

[125]  H. P. Lu,et al.  Single-cell imaging and spectroscopic analyses of Cr(VI) reduction on the surface of bacterial cells. , 2013, Langmuir : the ACS journal of surfaces and colloids.

[126]  Yiping Zhao,et al.  Detection and differentiation of foodborne pathogenic bacteria in mung bean sprouts using field deployable label-free SERS devices. , 2013, The Analyst.

[127]  Damien J. Batstone,et al.  Non-invasive characterization of electrochemically active microbial biofilms using confocal Raman microscopy , 2012 .

[128]  Jürgen Popp,et al.  The investigation of single bacteria by means of fluorescence staining and Raman spectroscopy , 2007 .

[129]  A. I. Athamneh,et al.  Phenotypic Profiling of Antibiotic Response Signatures in Escherichia coli Using Raman Spectroscopy , 2013, Antimicrobial Agents and Chemotherapy.

[130]  Human papilloma virus genotyping by surface-enhanced Raman scattering , 2014 .

[131]  S. J. Rehse,et al.  Sensitive and specific discrimination of pathogenic and nonpathogenic Escherichia coli using Raman spectroscopy—a comparison of two multivariate analysis techniques , 2013, Biomedical optics express.

[132]  Royston Goodacre,et al.  Rapid and quantitative detection of the microbial spoilage in milk using Fourier transform infrared spectroscopy and chemometrics. , 2008, The Analyst.

[133]  Pavel Zemánek,et al.  Candida parapsilosis Biofilm Identification by Raman Spectroscopy , 2014, International journal of molecular sciences.

[134]  Diarmaid Hughes,et al.  Antibiotic resistance and its cost: is it possible to reverse resistance? , 2010, Nature Reviews Microbiology.

[135]  K. Benison,et al.  Acidophilic halophilic microorganisms in fluid inclusions in halite from Lake Magic, Western Australia. , 2013, Astrobiology.

[136]  J. Popp,et al.  Fast differentiation of SIRS and sepsis from blood plasma of ICU patients using Raman spectroscopy , 2014, Journal of biophotonics.

[137]  Kees Maquelin,et al.  Identification of bacteria in drinking water with Raman spectroscopy , 2013 .

[138]  J. Popp,et al.  A manual and an automatic TERS based virus discrimination. , 2015, Nanoscale.

[139]  D. Qin,et al.  Characterization of Exoelectrogenic Bacteria Enterobacter Strains Isolated from a Microbial Fuel Cell Exposed to Copper Shock Load , 2014, PloS one.

[140]  V. Trainer,et al.  In situ strain-level detection and identification of Vibrio parahaemolyticus using surface-enhanced Raman spectroscopy. , 2013, Analytical chemistry.

[141]  Yiping Zhao,et al.  Detection of Mycoplasma pneumoniae in Simulated and True Clinical Throat Swab Specimens by Nanorod Array-Surface-Enhanced Raman Spectroscopy , 2010, PLoS ONE.

[142]  J. Mirão,et al.  Oxalate biofilm formation in mural paintings due to microorganisms – A comprehensive study , 2013 .

[143]  Identification of Virulence Determinants in Influenza Viruses , 2014, Analytical chemistry.

[144]  S. Gurunathan,et al.  Microbial reduction of graphene oxide by Escherichia coli: a green chemistry approach. , 2013, Colloids and surfaces. B, Biointerfaces.

[145]  M. Dittrich,et al.  2D Raman spectroscopy study of dolomite and cyanobacterial extracellular polymeric substances from Khor Al-Adaid sabkha (Qatar) , 2013 .

[146]  P. Treado,et al.  Raman chemical imaging spectroscopy reagentless detection and identification of pathogens: signature development and evaluation. , 2007, Analytical chemistry.

[147]  J. Irudayaraj,et al.  Surface-enhanced Raman spectroscopy applied to food safety. , 2013, Annual review of food science and technology.

[148]  J. Popp,et al.  Destruction-free procedure for the isolation of bacteria from sputum samples for Raman spectroscopic analysis , 2015, Analytical and Bioanalytical Chemistry.

[149]  I. Boyaci,et al.  A highly sensitive detection platform based on surface-enhanced Raman scattering for Escherichia coli enumeration , 2010, Analytical and bioanalytical chemistry.

[150]  Manfred Auer,et al.  Surface multiheme c-type cytochromes from Thermincola potens and implications for respiratory metal reduction by Gram-positive bacteria , 2012, Proceedings of the National Academy of Sciences.

[151]  Jinsong Feng,et al.  Rapid detection of Listeria monocytogenes in milk using confocal micro-Raman spectroscopy and chemometric analysis. , 2015, International journal of food microbiology.

[152]  S. Lane,et al.  Effect of cefazolin treatment on the nonresonant Raman signatures of the metabolic state of individual Escherichia coli cells. , 2010, Analytical chemistry.

[153]  C. Hunter,et al.  Rapid resonance Raman microspectroscopy to probe carbon dioxide fixation by single cells in microbial communities , 2011, The ISME Journal.

[154]  M. Wagner,et al.  Raman microspectroscopy reveals long‐term extracellular activity of chlamydiae , 2010, Molecular microbiology.

[155]  Jürgen Popp,et al.  Raman spectroscopic identification of single bacterial cells under antibiotic influence , 2014, Analytical and Bioanalytical Chemistry.

[156]  Jürgen Popp,et al.  The many facets of Raman spectroscopy for biomedical analysis , 2014, Analytical and Bioanalytical Chemistry.

[157]  J. Popp,et al.  Effect of supplementary manganese on the sporulation of Bacillus endospores analysed by Raman spectroscopy , 2009 .