BUbble Flow Field: a Simulation Framework for Evaluating Ultrasound Localization Microscopy Algorithms

—Ultrasound contrast enhanced imaging has seen widespread uptake in research and clinical diagnostic imaging. This includes applications such as vector flow imaging, functional ultrasound and super-resolution Ultrasound Localization Microscopy (ULM). All of these require testing and validation during development of new algorithms with ground truth data. In this work we present a comprehensive simulation platform BUbble Flow Field (BUFF) that generates contrast enhanced ultrasound images in vascular tree geometries with realistic flow characteristics and validation algorithms for ULM. BUFF allows complex micro-vascular network generation of random and user-defined vascular networks. Blood flow is simulated with a fast Computational Fluid Dynamics (CFD) solver and allows arbitrary input and output positions and custom pressures. The acoustic field sim- ulation is combined with non-linear Microbubble (MB) dynamics and simulates a range of point spread functions based on user-defined MB characteristics. The validation combines both binary and quantitative metrics. BFF’s capacity to generate and validate user-defined networks is demonstrated through its implementation in the Ultrasound Localisation and TRacking Algorithms for Super Resolution (ULTRA-SR) Challenge at the International Ultrasonics Symposium (IUS) 2022 of the Institute of Electrical and Electronics Engineers (IEEE). The ability to produce ULM images, and the availability of a ground truth in localisation and tracking enables objective and quantitative evaluation of the large number of localisation and tracking algorithms developed in the field. BUFF can also benefit deep learning based methods by automatically generating datasets for training. BUFF is a fully comprehensive simulation platform for testing and validation of novel ULM techniques and is open source.

[1]  E. Stride,et al.  Fast and Selective Super-Resolution Ultrasound In Vivo With Acoustically Activated Nanodroplets , 2022, IEEE Transactions on Medical Imaging.

[2]  M. Tang,et al.  Super-Resolution Ultrasound Through Sparsity-Based Deconvolution and Multi-Feature Tracking , 2022, IEEE Transactions on Medical Imaging.

[3]  M. Tang,et al.  Contrast Agent-Free Assessment of Blood Flow and Wall Shear Stress in the Rabbit Aorta using Ultrasound Image Velocimetry , 2021, Ultrasound in medicine & biology.

[4]  M. Tang,et al.  Ultrafast 3-D Ultrasound Imaging Using Row–Column Array-Specific Frame-Multiply-and-Sum Beamforming , 2021, IEEE Transactions on Ultrasonics, Ferroelectrics, and Frequency Control.

[5]  E. Stride,et al.  Ultrasound Contrast Agent Modeling: A Review. , 2020, Ultrasound in medicine & biology.

[6]  Jianwen Luo,et al.  Deep Learning for Ultrasound Localization Microscopy , 2020, IEEE Transactions on Medical Imaging.

[7]  Matthew R. Lowerison,et al.  Short Acquisition Time Super-Resolution Ultrasound Microvessel Imaging via Microbubble Separation , 2020, Scientific Reports.

[8]  M. Kachelriess,et al.  Clinical quantitative cardiac imaging for the assessment of myocardial ischaemia , 2020, Nature Reviews Cardiology.

[9]  Yonina C. Eldar,et al.  Super-Resolution Ultrasound Localization Microscopy Through Deep Learning , 2018, IEEE Transactions on Medical Imaging.

[10]  Yonina C. Eldar,et al.  SUSHI: Sparsity-Based Ultrasound Super-Resolution Hemodynamic Imaging , 2017, IEEE Transactions on Ultrasonics, Ferroelectrics, and Frequency Control.

[11]  C. Dunsby,et al.  Investigation of microbubble detection methods for super-resolution imaging of microvasculature , 2017, 2017 IEEE International Ultrasonics Symposium (IUS).

[12]  Meng-Xing Tang,et al.  Effects of nonlinear propagation in ultrasound contrast agent imaging. , 2010, Ultrasound in medicine & biology.

[13]  B T Cox,et al.  k-Wave: MATLAB toolbox for the simulation and reconstruction of photoacoustic wave fields. , 2010, Journal of biomedical optics.

[14]  Detlef Lohse,et al.  A model for large amplitude oscillations of coated bubbles accounting for buckling and rupture , 2005 .

[15]  F. Stenbäck,et al.  Size, shape, structure, and direction of angiogenesis in laryngeal tumour development , 2004, Journal of Clinical Pathology.

[16]  J. Arendt Paper presented at the 10th Nordic-Baltic Conference on Biomedical Imaging: Field: A Program for Simulating Ultrasound Systems , 1996 .

[17]  J. Jensen,et al.  Calculation of pressure fields from arbitrarily shaped, apodized, and excited ultrasound transducers , 1992, IEEE Transactions on Ultrasonics, Ferroelectrics and Frequency Control.

[18]  K. Vokurka,et al.  On Rayleigh's model of a freely oscillating bubble. I. Basic relations , 1985 .