A study of bias and increasing organismal complexity from their post‐translational modifications and reaction site interplays
暂无分享,去创建一个
Ishwor Thapa | Dhundy Bastola | Oliver Bonham-Carter | Steven From | O. Bonham-Carter | S. From | D. Bastola | I. Thapa
[1] Robert J. Ferl,et al. Evolution of the 14-3-3 Protein Family: Does the Large Number of Isoforms in Multicellular Organisms Reflect Functional Specificity? , 2000, Journal of Molecular Evolution.
[2] Jiandong Chen,et al. Ubiquitinated Sirtuin 1 (SIRT1) Function Is Modulated during DNA Damage-induced Cell Death and Survival* , 2015, The Journal of Biological Chemistry.
[3] N. Rachidi,et al. A touch of Zen: post‐translational regulation of the Leishmania stress response , 2015, Cellular microbiology.
[4] E. L. Presman. Approximation in Variation of the Distribution of a Sum of Independent Bernoulli Variables with a Poisson Law , 1986 .
[5] C. Ehresmann,et al. The Structure of Threonyl-tRNA Synthetase-tRNAThr Complex Enlightens Its Repressor Activity and Reveals an Essential Zinc Ion in the Active Site , 1999, Cell.
[6] Aric Hagberg,et al. Exploring Network Structure, Dynamics, and Function using NetworkX , 2008 .
[7] M. Skwarczynska,et al. Structure of a 14-3-3σ-YAP phosphopeptide complex at 1.15 A resolution. , 2010, Acta crystallographica. Section F, Structural biology and crystallization communications.
[8] Judit Villén,et al. A Conserved MST-FOXO Signaling Pathway Mediates Oxidative-Stress Responses and Extends Life Span , 2006, Cell.
[9] Jing Zhu,et al. GO-function: deriving biologically relevant functions from statistically significant functions , 2012, Briefings Bioinform..
[10] J. Iovanna,et al. Oxidative stress-induced p53 activity is enhanced by a redox-sensitive TP53INP1 SUMOylation , 2014, Cell Death and Differentiation.
[11] Hiromi Nomura,et al. Structural changes in the calcium pump accompanying the dissociation of calcium , 2002, Nature.
[12] Jonas S. Almeida,et al. Alignment-free sequence comparison-a review , 2003, Bioinform..
[13] Dhundy Bastola,et al. Alignment-free genetic sequence comparisons: a review of recent approaches by word analysis , 2014, Briefings Bioinform..
[14] S. Lonial,et al. When Cancer Fights Back: Multiple Myeloma, Proteasome Inhibition, and the Heat-Shock Response , 2015, Molecular Cancer Research.
[15] Dhundy Bastola,et al. A text mining application for linking functionally stressed-proteins to their post-translational modifications , 2015, 2015 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).
[16] R. Marmorstein,et al. Structural basis for DNA recognition by FoxO1 and its regulation by posttranslational modification. , 2008, Structure.
[17] D. Klionsky,et al. How to control self-digestion: transcriptional, post-transcriptional, and post-translational regulation of autophagy. , 2015, Trends in cell biology.
[18] Ishwor Thapa,et al. Evidence of post translational modification bias extracted from the tRNA and corresponding amino acid interplay across a set of diverse organisms , 2014, BCB.
[19] K. Bechtol,et al. Chunaram Choudhary Major Cellular Functions Lysine Acetylation Targets Protein Complexes and Co-Regulates , 2012 .
[20] Mu Wang,et al. Carbonylation Contributes to SERCA2a Activity Loss and Diastolic Dysfunction in a Rat Model of Type 1 Diabetes , 2011, Diabetes.
[21] Evan Bolton,et al. Database resources of the National Center for Biotechnology Information , 2017, Nucleic Acids Res..
[22] L. Gordon,et al. Poisson Approximation and the Chen-Stein Method , 1990 .
[23] D. Bar-Sagi,et al. Regulating the regulator: post-translational modification of RAS , 2011, Nature Reviews Molecular Cell Biology.
[24] P. Bork,et al. Alternative splicing and genome complexity , 2002, Nature Genetics.
[25] H. Dyson,et al. Intrinsically disordered proteins in cellular signalling and regulation , 2014, Nature Reviews Molecular Cell Biology.
[26] X. Jin,et al. Determination of the sites of posttranslational modifications in the charge isomers of bovine myelin basic protein by capillary electrophoresis-mass spectroscopy. , 1998, Biochemistry.
[27] Jay Pedersen,et al. A content and structural assessment of oxidative motifs across a diverse set of life forms , 2014, Comput. Biol. Medicine.
[28] D. Felsenberg,et al. Differential atrophy of the lower-limb musculature during prolonged bed-rest , 2009, European Journal of Applied Physiology.
[29] S. Kutty,et al. Carbonylation Induces Heterogeneity in Cardiac Ryanodine Receptor Function in Diabetes Mellitus , 2012, Molecular Pharmacology.
[30] A. Aitken. Post-translational modification of 14-3-3 isoforms and regulation of cellular function. , 2011, Seminars in cell & developmental biology.
[31] H. Beug,et al. Acetylation and MAPK phosphorylation cooperate to regulate the degradation of active GATA-1. , 2007, The EMBO journal.
[32] V. Ogryzko,et al. Regulation of activity of the transcription factor GATA-1 by acetylation , 1998, Nature.
[33] Peer Bork,et al. Alternative splicing and evolution. , 2003, BioEssays : news and reviews in molecular, cellular and developmental biology.
[34] R. Brosh,et al. Protein Degradation Pathways Regulate the Functions of Helicases in the DNA Damage Response and Maintenance of Genomic Stability , 2015, Biomolecules.
[35] Hsien-Da Huang,et al. dbPTM 3.0: an informative resource for investigating substrate site specificity and functional association of protein post-translational modifications , 2012, Nucleic Acids Res..
[36] E. Mica,et al. Post-transcriptional and post-translational regulations of drought and heat response in plants: a spider’s web of mechanisms , 2015, Front. Plant Sci..
[37] Hesham H. Ali,et al. A meta-genome sequencing and assembly preprocessing algorithm inspired by restriction site base composition , 2012, 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops.
[38] P. Bork,et al. Evolution and functional cross‐talk of protein post‐translational modifications , 2013, Molecular systems biology.
[39] D. Lavrov. Key transitions in animal evolution: a mitochondrial DNA perspective. , 2007, Integrative and comparative biology.
[40] Péter Csermely,et al. Protein stress and stress proteins: implications in aging and disease , 2007, Journal of Biosciences.
[41] Christodoulos A. Floudas,et al. Proteome-wide post-translational modification statistics: frequency analysis and curation of the swiss-prot database , 2011, Scientific reports.
[42] Lotfollah Najjar,et al. Modeling the Effects of Microgravity on Oxidation in Mitochondria: A Protein Damage Assessment across a Diverse Set of Life Forms , 2013, 2013 IEEE 13th International Conference on Data Mining Workshops.
[43] Janyl Jumadinova,et al. A multi-agent system with reinforcement learning agents for biomedical text mining , 2015, BCB.
[44] J. Boore. Animal mitochondrial genomes. , 1999, Nucleic acids research.
[45] Cathy H. Wu,et al. UniProt: the Universal Protein knowledgebase , 2004, Nucleic Acids Res..
[46] Y. Haupt,et al. The p53-Mdm2 loop: a critical juncture of stress response. , 2014, Sub-cellular biochemistry.
[47] Wei-Guo Zhu,et al. Surf the Post-translational Modification Network of p53 Regulation , 2012, International journal of biological sciences.
[48] H. Nothaft,et al. Protein glycosylation in bacteria: sweeter than ever , 2010, Nature Reviews Microbiology.
[49] Di Wu,et al. Bioinformatics analysis of the epitope regions for norovirus capsid protein , 2013, BMC Bioinformatics.
[50] S. Penfield. Temperature perception and signal transduction in plants. , 2008, The New phytologist.
[51] Hesham H. Ali,et al. A base composition analysis of natural patterns for the preprocessing of metagenome sequences , 2013, BMC Bioinformatics.