Chemical shifts as a tool for structure determination.

Publisher Summary This chapter describes chemical shift standards and pointing out some of the necessary corrections and experimental recommendations that need to be followed so that the NMR community can exploit chemical shift information to the fullest. Chemical shift analysis holds much promise for the field of protein NMR. There are two very different chemical shift standards are being used has led to the appearance of several very different tables for random coil 13 C chemical shifts, which has already caused a good deal of confusion within the NMR community. In particular case, chemical shift analysis was applied to a small, flexible peptide to both localize and quantify helix content as a function of TFE concentration. By monitoring the TFE-induced displacement of assigned a- 13 C resonances, the extent of the relative chemical shift change could be correlated with the intensity of the helical CD signal. These chemical shift plots are reported to provide qualitative details on the flexibility of the molecule and the presence of possible nonnative conformers.

[1]  Hazime Saitô,et al.  Conformation‐dependent 13C chemical shifts: A new means of conformational characterization as obtained by high‐resolution solid‐state 13C NMR , 1986 .

[2]  A. Bax,et al.  Sensitivity-enhanced two-dimensional heteronuclear shift correlation NMR spectroscopy , 1986 .

[3]  A. D. Marco,et al.  pH dependence of internal references , 1977 .

[4]  H. Mcconnell,et al.  Theory of Nuclear Magnetic Shielding in Molecules. I. Long‐Range Dipolar Shielding of Protons , 1957 .

[5]  P E Wright,et al.  Computational methods for determining protein structures from NMR data. , 1990, Biochemical pharmacology.

[6]  A. Bax,et al.  Empirical correlation between protein backbone conformation and C.alpha. and C.beta. 13C nuclear magnetic resonance chemical shifts , 1991 .

[7]  P. Lu,et al.  Lambda cro repressor complex with OR3 DNA: 15N NMR observations. , 1987, Biochemistry.

[8]  O. Jardetzky,et al.  α-Proton chemical shifts and secondary structure in proteins , 1989 .

[9]  Robert J.P. Williams,et al.  Structural information from NMR secondary chemical shifts of peptide α C−H protons in proteins , 1983 .

[10]  Hans Robert Kalbitzer,et al.  Distribution of chemical shifts in 1H nuclear magnetic resonance spectra of proteins , 1988 .

[11]  K. Wüthrich,et al.  Carbon‐13 NMR chemical shifts of the common amino acid residues measured in aqueous solutions of the linear tetrapeptides H‐Gly‐Gly‐ X‐L‐ Ala‐OH , 1978 .

[12]  F. Richards,et al.  Simple techniques for the quantification of protein secondary structure by 1H NMR spectroscopy , 1991, FEBS letters.

[13]  Tigelaar Hl,et al.  Molecular Zeeman effect in formamide and the -proton chemical shift in poly(L-alanine). , 1972 .

[14]  K. Wüthrich,et al.  Ring current effects in the conformation dependent NMR chemical shifts of aliphatic protons in the basic pancreatic trypsin inhibitor. , 1979, Biochimica et biophysica acta.

[15]  R. Dwek,et al.  Comparisons of ring-current shifts calculated from the crystal structure of egg white lysozyme of hen with the proton nuclear magnetic resonance spectrum of lysozyme in solution. , 1980, Biochemistry.

[16]  Kurt Wüthrich,et al.  1H‐nmr parameters of the common amino acid residues measured in aqueous solutions of the linear tetrapeptides H‐Gly‐Gly‐X‐L‐Ala‐OH , 1979 .

[17]  I. Kuntz,et al.  Amide chemical shifts in many helices in peptides and proteins are periodic , 1991 .

[18]  R. J. Williams,et al.  The value of chemical shift parameters in the description of protein solution structures , 1991, Journal of biomolecular NMR.

[19]  E. Becker A proposed scale for nitrogen chemical shifts , 1971 .

[20]  F. Richards,et al.  The chemical shift index: a fast and simple method for the assignment of protein secondary structure through NMR spectroscopy. , 1992, Biochemistry.

[21]  F. Bovey,et al.  Calculation of Nuclear Magnetic Resonance Spectra of Aromatic Hydrocarbons , 1958 .

[22]  F. Blanco,et al.  Periodic properties of proton conformational shifts in isolated protein helices. An experimental study. , 1992, European journal of biochemistry.

[23]  F. Bermejo,et al.  A study of the NH NMR signals of Gly-Gly-X-Ala tetrapeptides in H2O at low temperature. , 1986 .

[24]  D. Case,et al.  A new analysis of proton chemical shifts in proteins , 1991 .

[25]  A. Pastore,et al.  The relationship between chemical shift and secondary structure in proteins , 1990 .

[26]  F. Richards,et al.  Relationship between nuclear magnetic resonance chemical shift and protein secondary structure. , 1991, Journal of molecular biology.

[27]  G. N. Ramachandran,et al.  Conformation of polypeptides and proteins. , 1968, Advances in protein chemistry.

[28]  The Application of Chemical Shift Calculation to Protein Structure Determination by NMR , 1993 .

[29]  P E Wright,et al.  Defining solution conformations of small linear peptides. , 1991, Annual review of biophysics and biophysical chemistry.

[30]  Venkataraman Thanabal,et al.  Structure-induced carbon-13 chemical shifts : a sensitive measure of transient localized secondary structure in peptides , 1992 .

[31]  H. Kricheldorf,et al.  Secondary structure of peptides. 3. Carbon-13 NMR cross polarization/magic angle spinning spectroscopic characterization of solid polypeptides , 1983 .

[32]  B. Sykes,et al.  Assignment of amide 1H and 15N NMR resonances in detergent-solubilized M13 coat protein: a model for the coat protein dimer. , 1992, Biochemistry.

[33]  M. Williamson,et al.  A method for the calculation of protein α-CH chemical shifts , 1992 .

[34]  R. Lichter,et al.  Nitrogen-15 nuclear magnetic resonance spectroscopy. Evaluation of chemical shift references , 1977 .

[35]  D. Cowburn,et al.  Nitrogen-15 chemical shifts of backbone amides in bovine pancreatic trypsin inhibitor and apamin [Erratum to document cited in CA111(17):149076x] , 1990 .

[36]  Kurt Wüthrich,et al.  NMR in biological research: Peptides and proteins , 1976 .

[37]  J. Rizo,et al.  Conformational behavior of Escherichia coli OmpA signal peptides in membrane mimetic environments. , 1993, Biochemistry.

[38]  M. Jiménez,et al.  1H NMR and CD evidence of the folding of the isolated ribonuclease 50–61 fragment , 1987, FEBS letters.

[39]  Robert Powers,et al.  Proton, nitrogen-15, carbon-13, carbon-13 monoxide assignments of human interleukin-4 using three-dimensional double- and triple-resonance heteronuclear magnetic resonance spectroscopy , 1992 .

[40]  K. Wüthrich,et al.  Protein conformation and proton nuclear-magnetic-resonance chemical shifts. , 1983, European journal of biochemistry.

[41]  R. Hodges,et al.  Relationship between amide proton chemical shifts and hydrogen bonding in amphipathic .alpha.-helical peptides , 1992 .

[42]  N. Clayden,et al.  Peptide group shifts , 1982 .

[43]  R. Mallion,et al.  Ring current theories in nuclear magnetic resonance , 1979 .

[44]  D. Wilson,et al.  Magnetic resonance studies of macromolecules. I. Aromatic-methyl interactions and helical structure effects in lysozyme. , 1967, Biochemistry.

[45]  J. Neira,et al.  Peptide group chemical shift computation , 1992 .

[46]  S. Opella,et al.  Protein structure by solid state nuclear magnetic resonance. Residues 40 to 45 of bacteriophage fd coat protein. , 1985, Journal of molecular biology.

[47]  D. Meadows,et al.  Nuclear magnetic resonance studies of helix-coil transitions in polyamino acids. , 1967, Journal of molecular biology.

[48]  F. Richards,et al.  1H-15N heteronuclear NMR studies of Escherichia coli thioredoxin in samples isotopically labeled by residue type. , 1985, Biochemistry.

[49]  M. Williamson,et al.  Secondary‐structure dependent chemical shifts in proteins , 1990, Biopolymers.

[50]  D. Cowburn,et al.  15N Chemical Shifts of Backbone Amides in Bovine Pancreatic Trypsin Inhibitor and Apamin , 1989 .