Accurate, rapid identification of dislocation lines in coherent diffractive imaging via a min-max optimization formulation

Defects such as dislocations impact materials properties and their response during external stimuli. Defect engineering has emerged as a possible route to improving the performance of materials over a wide range of applications, including batteries, solar cells, and semiconductors. Imaging these defects in their native operating conditions to establish the structure-function relationship and, ultimately, to improve performance has remained a considerable challenge for both electron-based and x-ray-based imaging techniques. However, the advent of Bragg coherent x-ray diffractive imaging (BCDI) has made possible the 3D imaging of multiple dislocations in nanoparticles ranging in size from 100 nm to1000 nm. While the imaging process succeeds in many cases, nuances in identifying the dislocations has left manual identification as the preferred method. Derivative-based methods are also used, but they can be inaccurate and are computationally inefficient. Here we demonstrate a derivative-free method that is both more accurate and more computationally efficient than either derivative- or human-based methods for identifying 3D dislocation lines in nanocrystal images produced by BCDI. We formulate the problem as a min-max optimization problem and show exceptional accuracy for experimental images. We demonstrate a 260x speedup for a typical experimental dataset with higher accuracy over current methods. We discuss the possibility of using this algorithm as part of a sparsity-based phase retrieval process. We also provide the MATLAB code for use by other researchers.

[1]  R. Harder,et al.  Bragg Coherent Diffractive Imaging of Zinc Oxide Acoustic Phonons at Picosecond Timescales , 2017, Scientific Reports.

[2]  Matthew W. Kanan,et al.  Bragg coherent diffractive imaging of single-grain defect dynamics in polycrystalline films , 2017, Science.

[3]  Ian K. Robinson,et al.  3D lattice distortions and defect structures in ion-implanted nano-crystals , 2017, Scientific Reports.

[4]  A Ulvestad,et al.  Stability Limits and Defect Dynamics in Ag Nanoparticles Probed by Bragg Coherent Diffractive Imaging. , 2017, Nano letters.

[5]  J. W. Kim,et al.  Three-dimensional imaging of dislocation dynamics during the hydriding phase transformation. , 2017, Nature materials.

[6]  Ian McNulty,et al.  Ultrafast Three-Dimensional X-ray Imaging of Deformation Modes in ZnO Nanocrystals. , 2017, Nano letters.

[7]  Stefan M. Wild,et al.  Single-view phase retrieval of an extended sample by exploiting edge detection and sparsity. , 2016, Optics express.

[8]  O. Shpyrko,et al.  Coherent diffractive imaging: towards achieving atomic resolution. , 2015, Journal of synchrotron radiation.

[9]  Sven Leyffer,et al.  Visualizing and Improving the Robustness of Phase Retrieval Algorithms , 2015, ICCS.

[10]  R. Harder,et al.  3D Imaging of Twin Domain Defects in Gold Nanoparticles. , 2015, Nano letters.

[11]  J. Miao,et al.  Beyond crystallography: Diffractive imaging using coherent x-ray light sources , 2015, Science.

[12]  Y. S. Meng,et al.  Topological defect dynamics in operando battery nanoparticles , 2015, Science.

[13]  Ian K. Robinson,et al.  Three-dimensional imaging of dislocation propagation during crystal growth and dissolution , 2015, Nature materials.

[14]  Jia Li,et al.  Analytical modeling of dislocation effect on diffusion induced stress in a cylindrical lithium ion battery electrode , 2014 .

[15]  Ian K. Robinson,et al.  Atomic Diffusion within Individual Gold Nanocrystal , 2014, Scientific Reports.

[16]  E. Mamontov,et al.  Direct measurement of hydrogen dislocation pipe diffusion in deformed polycrystalline Pd using quasielastic neutron scattering. , 2014, Physical review letters.

[17]  R. Harder,et al.  Core-shell strain structure of zeolite microcrystals. , 2013, Nature materials.

[18]  Justin S. Wark,et al.  Ultrafast Three-Dimensional Imaging of Lattice Dynamics in Individual Gold Nanocrystals , 2013, Science.

[19]  Christian Kirches,et al.  Mixed-integer nonlinear optimization*† , 2013, Acta Numerica.

[20]  G. Aeppli,et al.  Differential stress induced by thiol adsorption on facetted nanocrystals. , 2011, Nature materials.

[21]  J. Als-Nielsen,et al.  Elements of Modern X-ray Physics: Als-Nielsen/Elements , 2011 .

[22]  M. Newton,et al.  Three-dimensional imaging of strain in a single ZnO nanorod. , 2010, Nature materials.

[23]  G. P. P. Pun,et al.  A molecular dynamics study of self-diffusion in the cores of screw and edge dislocations in aluminum , 2009 .

[24]  A. Korsunsky,et al.  Mesomechanics 2009 Crystal plasticity and hardening: a dislocation dynamics study , 2009 .

[25]  R. Harder,et al.  Coherent X-ray diffraction imaging of strain at the nanoscale. , 2009, Nature materials.

[26]  S. Marchesini,et al.  Invited article: a [corrected] unified evaluation of iterative projection algorithms for phase retrieval. , 2006, The Review of scientific instruments.

[27]  S. Marchesini,et al.  High-resolution ab initio three-dimensional x-ray diffraction microscopy. , 2005, Journal of the Optical Society of America. A, Optics, image science, and vision.

[28]  Julian D Gale,et al.  Predicting the structure of screw dislocations in nanoporous materials , 2004, Nature materials.

[29]  S. Marchesini,et al.  X-ray image reconstruction from a diffraction pattern alone , 2003, physics/0306174.

[30]  F. Cacialli Journal of Physics Condensed Matter: Preface , 2002 .

[31]  I. Robinson,et al.  Partial Coherence Effects on the Imaging of Small Crystals using Coherent X-ray Diffraction , 2001 .

[32]  D. Hull,et al.  Introduction to Dislocations , 1968 .

[33]  S. Marchesini A unified evaluation of iterative projection algorithms for phase retrieval , 2018 .

[34]  Physical Review Letters 63 , 1989 .

[35]  F. C. Frank,et al.  The influence of dislocations on crystal growth , 1949 .