Non-Markovian model for transport and reactions of particles in spiny dendrites.

Motivated by the experiments [Santamaria, Neuron 52, 635 (2006)10.1016/j.neuron.2006.10.025] that indicated the possibility of subdiffusive transport of molecules along dendrites of cerebellar Purkinje cells, we develop a mesoscopic model for transport and chemical reactions of particles in spiny dendrites. The communication between spines and a parent dendrite is described by a non-Markovian random process and, as a result, the overall movement of particles can be subdiffusive. A system of integrodifferential equations is derived for the particles densities in dendrites and spines. This system involves the spine-dendrite interaction term which describes the memory effects and nonlocality in space. We consider the impact of power-law waiting time distributions on the transport of biochemical signals and mechanism of the accumulation of plasticity-inducing signals inside spines.

[1]  M. Segal Dendritic spines and long-term plasticity , 2005, Nature Reviews Neuroscience.

[2]  J Rinzel,et al.  Propagation of dendritic spikes mediated by excitable spines: a continuum theory. , 1991, Journal of neurophysiology.

[3]  I M Sokolov,et al.  Reaction-subdiffusion equations for the A<=>B reaction. , 2008, Physical review. E, Statistical, nonlinear, and soft matter physics.

[4]  I. Sokolov,et al.  Stationary fronts in an A + B --> 0 reaction under subdiffusion. , 2008, Physical review letters.

[5]  R. Metzler,et al.  Random time-scale invariant diffusion and transport coefficients. , 2008, Physical review letters.

[6]  M. Saxton Anomalous diffusion due to binding: a Monte Carlo study. , 1996, Biophysical journal.

[7]  David Holcman,et al.  Modeling Calcium Dynamics in Dendritic Spines , 2005, SIAM J. Appl. Math..

[8]  Berton A. Earnshaw,et al.  Diffusion-trapping model of receptor trafficking in dendrites. , 2007, Physical review. E, Statistical, nonlinear, and soft matter physics.

[9]  A. Berezhkovskii,et al.  Single-file transport of water molecules through a carbon nanotube. , 2002, Physical review letters.

[10]  Z. Schuss,et al.  The narrow escape problem for diffusion in cellular microdomains , 2007, Proceedings of the National Academy of Sciences.

[11]  E. Schutter,et al.  Anomalous Diffusion in Purkinje Cell Dendrites Caused by Spines , 2006, Neuron.

[12]  Sergei Fedotov,et al.  Probabilistic approach to a proliferation and migration dichotomy in tumor cell invasion. , 2007, Physical review. E, Statistical, nonlinear, and soft matter physics.

[13]  D W Tank,et al.  Direct Measurement of Coupling Between Dendritic Spines and Shafts , 1996, Science.

[14]  David Holcman,et al.  Survival probability of diffusion with trapping in cellular neurobiology. , 2005, Physical review. E, Statistical, nonlinear, and soft matter physics.

[15]  Stephen Coombes,et al.  Solitary Waves in a Model of Dendritic Cable with Active Spines , 2000, SIAM J. Appl. Math..

[16]  Bernardo L Sabatini,et al.  Ca2+ signaling in dendritic spines , 2007, Current Opinion in Neurobiology.

[17]  Leonardo Dagdug,et al.  Transient diffusion in a tube with dead ends. , 2007, The Journal of chemical physics.

[18]  Robin Gerlach,et al.  Anomalous fluid transport in porous media induced by biofilm growth. , 2004, Physical review letters.

[19]  Bernardo L Sabatini,et al.  Neuronal Activity Regulates Diffusion Across the Neck of Dendritic Spines , 2005, Science.

[20]  S. Wearne,et al.  Fractional cable models for spiny neuronal dendrites. , 2008, Physical review letters.

[21]  Kristen M Harris,et al.  Structure, development, and plasticity of dendritic spines , 1999, Current Opinion in Neurobiology.

[22]  Douglas B. Ehlenberger,et al.  Automated Three-Dimensional Detection and Shape Classification of Dendritic Spines from Fluorescence Microscopy Images , 2008, PloS one.

[23]  B. M. Fulk MATH , 1992 .

[24]  Werner Horsthemke,et al.  Kinetic equations for reaction-subdiffusion systems: derivation and stability analysis. , 2006, Physical review. E, Statistical, nonlinear, and soft matter physics.

[25]  S. Baer,et al.  Analysis of an excitable dendritic spine with an activity-dependent stem conductance , 1998, Journal of mathematical biology.

[26]  A. Iomin,et al.  Migration and proliferation dichotomy in tumor-cell invasion. , 2006, Physical review letters.

[27]  P. Bressloff,et al.  Saltatory waves in the spike-diffuse-spike model of active dendritic spines. , 2003, Physical review letters.

[28]  K. Svoboda,et al.  Structure and function of dendritic spines. , 2002, Annual review of physiology.

[29]  S L Wearne,et al.  Anomalous diffusion with linear reaction dynamics: from continuous time random walks to fractional reaction-diffusion equations. , 2006, Physical review. E, Statistical, nonlinear, and soft matter physics.

[30]  J. Klafter,et al.  The random walk's guide to anomalous diffusion: a fractional dynamics approach , 2000 .