Proteomics Insights into Medullary Sponge Kidney Disease: Review of the Recent Results of an Italian Research Collaborative Network

Background: Medullary sponge kidney (MSK) disease is a rare and neglected congenital condition typically associated with nephrocalcinosis/nephrolithiasis, urinary concentration defects, and cystic anomalies in the precalyceal ducts that, although sporadic in the general population, is relatively frequent in renal stone formers. The physiopathologic mechanism associated with this disease is not fully understood, and omics technologies may help address this gap. Summary: The aim of this review was to provide an overview of the current state of the application of proteomics in the study of this rare disease. In particular, we focused on the results of our recent Italian collaborative studies that, analyzing the MSK whole and extracellular vesicle urinary content by mass spectrometry, have displayed the existence of a large and multifactorial MSK-associated biological machinery and identified some main regulatory biological elements able to discriminate patients affected by this rare disorder from those with idiopathic calcium nephrolithiasis and autosomal dominant polycystic kidney disease (including laminin subunit alpha 2, ficolin 1, mannan-binding lectin serine protease 2, complement component 4-binding protein β, sphingomyelin, ephrins). Key Messages: The application of omics technologies has provided new insights into the comprehension of the physiopathology of the MSK disease and identified novel potential diagnostic biomarkers that may replace in future expensive and invasive radiological tests (including CT) and select novel therapeutic targets potentially employable, whether validated in a large cohort of patients, in the daily clinical practice.

[1]  G. Ghiggeri,et al.  A Comprehensive Proteomics Analysis of Urinary Extracellular Vesicles Identifies a Specific Kinase Protein Profile as a Novel Hallmark of Medullary Sponge Kidney Disease , 2022, Kidney international reports.

[2]  G. Malerba,et al.  Sphingomyelin and Medullary Sponge Kidney Disease: A Biological Link Identified by Omics Approach , 2021, Frontiers in Medicine.

[3]  I. Panfoli,et al.  Analysis of urinary exosomes applications for rare kidney disorders , 2020, Expert review of proteomics.

[4]  M. Spedding,et al.  Sphingolipids metabolism alteration in the central nervous system: Amyotrophic lateral sclerosis (ALS) and other neurodegenerative diseases. , 2020, Seminars in cell & developmental biology.

[5]  G. Gambaro,et al.  Proteomic Analysis of Urinary Extracellular Vesicles Reveals a Role for the Complement System in Medullary Sponge Kidney Disease , 2019, International journal of molecular sciences.

[6]  G. Gambaro,et al.  Proteomic Analysis of Urinary Microvesicles and Exosomes in Medullary Sponge Kidney Disease and Autosomal Dominant Polycystic Kidney Disease. , 2019, Clinical journal of the American Society of Nephrology : CJASN.

[7]  G. Remuzzi,et al.  Urinary proteome signature of Renal Cysts and Diabetes syndrome in children , 2019, Scientific Reports.

[8]  C. Farquharson,et al.  PLA2 and ENPP6 may act in concert to generate phosphocholine from the matrix vesicle membrane during skeletal mineralization , 2018, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

[9]  Manoj B. Patel,et al.  Efficacy of Multi-Detector Computed Tomography for the Diagnosis of Medullary Sponge Kidney , 2018, Current Urology.

[10]  I. Miinalainen,et al.  HNF1B controls epithelial organization and cell polarity during ureteric bud branching and collecting duct morphogenesis , 2017, Development.

[11]  G. Gambaro,et al.  Proteomic-based research strategy identified laminin subunit alpha 2 as a potential urinary-specific biomarker for the medullary sponge kidney disease. , 2017, Kidney international.

[12]  M. Khurshid,et al.  Proteomics: Technologies and Their Applications. , 2017, Journal of chromatographic science.

[13]  C. Ibáñez,et al.  Biology of GDNF and its receptors — Relevance for disorders of the central nervous system , 2017, Neurobiology of Disease.

[14]  G. Gambaro,et al.  New non-renal congenital disorders associated with medullary sponge kidney (MSK) support the pathogenic role of GDNF and point to the diagnosis of MSK in recurrent stone formers , 2017, Urolithiasis.

[15]  A. Kispert,et al.  Eph/ephrin signaling in the kidney and lower urinary tract , 2016, Pediatric Nephrology.

[16]  S. Kalantari,et al.  Human Urine Proteomics: Analytical Techniques and Clinical Applications in Renal Diseases , 2015, International journal of proteomics.

[17]  M. Salvadori,et al.  Complement involvement in kidney diseases: From physiopathology to therapeutical targeting. , 2015, World journal of nephrology.

[18]  F. Fagotto,et al.  Ephrin-Eph signaling in embryonic tissue separation , 2014, Cell adhesion & migration.

[19]  R. Zietse,et al.  Urinary extracellular vesicles and the kidney: biomarkers and beyond. , 2014, American journal of physiology. Renal physiology.

[20]  V. Torres,et al.  Aberrant expression of laminin-332 promotes cell proliferation and cyst growth in ARPKD. , 2014, American journal of physiology. Renal physiology.

[21]  J. Dear,et al.  Urinary exosomes: A reservoir for biomarker discovery and potential mediators of intrarenal signalling , 2013, Proteomics.

[22]  G. Gambaro,et al.  Medullary sponge kidney: state of the art. , 2013, Nephrology, dialysis, transplantation : official publication of the European Dialysis and Transplant Association - European Renal Association.

[23]  G. Gambaro,et al.  Familial clustering of medullary sponge kidney is autosomal dominant with reduced penetrance and variable expressivity. , 2013, Kidney international.

[24]  D. Hwang,et al.  Urinary exosomes and proteomics. , 2011, Mass spectrometry reviews.

[25]  Luigi Biancone,et al.  Exosomes/microvesicles as a mechanism of cell-to-cell communication. , 2010, Kidney international.

[26]  Christian Weber,et al.  Microparticles: Protagonists of a Novel Communication Network for Intercellular Information Exchange , 2010, Circulation research.

[27]  G. Gambaro,et al.  Long-term treatment with potassium citrate and renal stones in medullary sponge kidney. , 2010, Clinical journal of the American Society of Nephrology : CJASN.

[28]  G. Gambaro,et al.  Identification of GDNF gene sequence variations in patients with medullary sponge kidney disease. , 2010, Clinical journal of the American Society of Nephrology : CJASN.

[29]  M. Bhasin,et al.  Optimizing a Proteomics Platform for Urine Biomarker Discovery* , 2010, Molecular & Cellular Proteomics.

[30]  S. Hopkinson,et al.  Laminin deposition in the extracellular matrix: a complex picture emerges , 2009, Journal of Cell Science.

[31]  G. Gambaro,et al.  Bone disease in medullary sponge kidney and effect of potassium citrate treatment. , 2009, Clinical journal of the American Society of Nephrology : CJASN.

[32]  A. Paterson,et al.  Unified criteria for ultrasonographic diagnosis of ADPKD. , 2009, Journal of the American Society of Nephrology : JASN.

[33]  A. Fico,et al.  Fine-tuning of cell signaling by glypicans , 2011, Cellular and Molecular Life Sciences.

[34]  J. Lötvall,et al.  Exosome-mediated transfer of mRNAs and microRNAs is a novel mechanism of genetic exchange between cells , 2007, Nature Cell Biology.

[35]  B. Knebelmann,et al.  Laminin 5 Regulates Polycystic Kidney Cell Proliferation and Cyst Formation* , 2006, Journal of Biological Chemistry.

[36]  M. Shannon,et al.  A hypomorphic mutation in the mouse laminin alpha5 gene causes polycystic kidney disease. , 2006, Journal of the American Society of Nephrology : JASN.

[37]  G. Gambaro,et al.  Medullary sponge kidney (Lenarduzzi-Cacchi-Ricci disease): a Padua Medical School discovery in the 1930s. , 2006, Kidney international.

[38]  G. Gambaro,et al.  An unusual association of contralateral congenital small kidney, reduced renal function and hyperparathyroidism in sponge kidney patients: on the track of the molecular basis. , 2005, Nephrology, dialysis, transplantation : official publication of the European Dialysis and Transplant Association - European Renal Association.

[39]  Rong-Fong Shen,et al.  Identification and proteomic profiling of exosomes in human urine. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[40]  D. Talham,et al.  Presence of lipids in urine, crystals and stones: implications for the formation of kidney stones. , 2002, Kidney international.

[41]  S. Nagao,et al.  Increased renal expression of monocyte chemoattractant protein-1 and osteopontin in ADPKD in rats. , 2001, Kidney international.

[42]  A. Hattersley,et al.  Hepatocyte Nuclear Factor-1β: A New Kindred with Renal Cysts and Diabetes and Gene Expression in Normal Human Development , 2001 .

[43]  Keith E. Mostov,et al.  Rac1 orientates epithelial apical polarity through effects on basolateral laminin assembly , 2001, Nature Cell Biology.

[44]  S. Selleck,et al.  Glypicans: proteoglycans with a surprise. , 2001, The Journal of clinical investigation.

[45]  Y. Pirson,et al.  Medullary sponge kidney--part of a congenital syndrome. , 2001, Nephrology, dialysis, transplantation : official publication of the European Dialysis and Transplant Association - European Renal Association.

[46]  A. Calender,et al.  Association of medullary sponge kidney disease and multiple endocrine neoplasia type IIA due to RET gene mutation: is there a causal relationship? , 2000, Nephrology, dialysis, transplantation : official publication of the European Dialysis and Transplant Association - European Renal Association.

[47]  M. Saarma,et al.  GDNF family receptors in the embryonic and postnatal rat heart and reduced cholinergic innervation in mice hearts lacking Ret or GFRα2 , 2000, Developmental dynamics : an official publication of the American Association of Anatomists.

[48]  P. Yurchenco,et al.  Form and function: The laminin family of heterotrimers , 2000, Developmental dynamics : an official publication of the American Association of Anatomists.

[49]  R. Oppenheim,et al.  Expression pattern of GDNF, c-ret, and GFRalphas suggests novel roles for GDNF ligands during early organogenesis in the chick embryo. , 2000, Developmental biology.

[50]  G. Neufeld,et al.  Glypican-1 Is a VEGF165 Binding Proteoglycan That Acts as an Extracellular Chaperone for VEGF165 * , 1999, The Journal of Biological Chemistry.

[51]  J J Sixma,et al.  Activated platelets release two types of membrane vesicles: microvesicles by surface shedding and exosomes derived from exocytosis of multivesicular bodies and alpha-granules. , 1999, Blood.

[52]  H. Friess,et al.  The cell-surface heparan sulfate proteoglycan glypican-1 regulates growth factor action in pancreatic carcinoma cells and is overexpressed in human pancreatic cancer. , 1998, The Journal of clinical investigation.

[53]  A. Admon,et al.  Identification of Glypican as a Dual Modulator of the Biological Activity of Fibroblast Growth Factors* , 1997, The Journal of Biological Chemistry.

[54]  H. van den Berghe,et al.  Stimulation of fibroblast growth factor receptor-1 occupancy and signaling by cell surface-associated syndecans and glypican , 1996, The Journal of cell biology.

[55]  M. McKee,et al.  Osteopontin: an interfacial extracellular matrix protein in mineralized tissues. , 1996, Connective tissue research.

[56]  P. Osther,et al.  Urinary acidification and urinary excretion of calcium and citrate in women with bilateral medullary sponge kidney. , 1994, Urologia internationalis.

[57]  F. Reinholt,et al.  Osteopontin--a possible anchor of osteoclasts to bone. , 1990, Proceedings of the National Academy of Sciences of the United States of America.

[58]  A. Lambrianides,et al.  Medullary sponge disease in horseshoe kidney. , 1987, Urology.

[59]  N. Breslau,et al.  Metabolic evaluation of nephrolithiasis in patients with medullary sponge kidney. , 1981, JAMA.

[60]  M. Sage,et al.  Medullary sponge kidney. , 1977, Australasian radiology.