Broad phylogenomic sampling improves resolution of the animal tree of life
暂无分享,去创建一个
David Q. Matus | Stephen A. Smith | M. Martindale | G. Rouse | W. Wheeler | G. Giribet | G. Edgecombe | A. Schmidt‐Rhaesa | R. Kristensen | W. E. Browne | C. Dunn | A. Hejnol | K. Pang | E. Seaver | M. Obst | M. Sørensen | S. Haddock | Akiko Okusu | Gonzalo Giribet | A. Schmidt-Rhaesa | D. Matus | Matthias Obst
[1] Casey W. Dunn,et al. Phyutility: a phyloinformatics tool for trees, alignments and molecular data , 2008, Bioinform..
[2] A. Minelli. Animal Evolution: Interrelationships of the Living Phyla , 2007 .
[3] H. Philippe,et al. Acoel Flatworms Are Not Platyhelminthes: Evidence from Phylogenomics , 2007, PloS one.
[4] C. Bleidorn,et al. Annelid phylogeny and the status of Sipuncula and Echiura , 2007, BMC Evolutionary Biology.
[5] H. Philippe,et al. SCaFoS: a tool for Selection, Concatenation and Fusion of Sequences for phylogenomics , 2007, BMC Evolutionary Biology.
[6] Hervé Philippe,et al. Lack of resolution in the animal phylogeny: closely spaced cladogeneses or undetected systematic errors? , 2007, Molecular biology and evolution.
[7] Sarah J. Bourlat,et al. Deuterostome phylogeny reveals monophyletic chordates and the new phylum Xenoturbellida , 2006, Nature.
[8] H. Philippe,et al. Large-scale sequencing and the new animal phylogeny. , 2006, Trends in ecology & evolution.
[9] Alexandros Stamatakis,et al. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models , 2006, Bioinform..
[10] Gonzalo Giribet,et al. Evidence for a clade composed of molluscs with serially repeated structures: Monoplacophorans are related to chitons , 2006, Proceedings of the National Academy of Sciences of the United States of America.
[11] F. Delsuc,et al. Tunicates and not cephalochordates are the closest living relatives of vertebrates , 2006, Nature.
[12] H. Philippe,et al. Multigene analyses of bilaterian animals corroborate the monophyly of Ecdysozoa, Lophotrochozoa, and Protostomia. , 2005, Molecular biology and evolution.
[13] J. McInerney,et al. The Opisthokonta and the Ecdysozoa may not be clades: stronger support for the grouping of plant and animal than for animal and fungi and stronger support for the Coelomata than Ecdysozoa. , 2005, Molecular biology and evolution.
[14] Vivek Gowri-Shankar,et al. Consideration of RNA secondary structure significantly improves likelihood-based estimates of phylogeny: examples from the bilateria. , 2005, Molecular biology and evolution.
[15] John B. Anderson,et al. CDD: a Conserved Domain Database for protein classification , 2004, Nucleic Acids Res..
[16] A. Chicaro,et al. Animal Evolution and the Molecular Signature of Radiations Compressed in Time , 2005 .
[17] G. Gilbert,et al. THE NEW VIEW OF ANIMAL PHYLOGENY , 2005 .
[18] Michael P. Cummings,et al. PAUP* [Phylogenetic Analysis Using Parsimony (and Other Methods)] , 2004 .
[19] P. Holland,et al. Phylogenomics of eukaryotes: impact of missing data on large alignments. , 2004, Molecular biology and evolution.
[20] Mark L. Blaxter,et al. PartiGene-constructing partial genomes , 2004, Bioinform..
[21] H. Philippe,et al. A Bayesian mixture model for across-site heterogeneities in the amino-acid replacement process. , 2004, Molecular biology and evolution.
[22] J. Shultz,et al. Ecdysozoan phylogeny and Bayesian inference: first use of nearly complete 28S and 18S rRNA gene sequences to classify the arthropods and their kin. , 2004, Molecular phylogenetics and evolution.
[23] Robert C. Edgar,et al. MUSCLE: multiple sequence alignment with high accuracy and high throughput. , 2004, Nucleic acids research.
[24] Darren A. Natale,et al. The COG database: an updated version includes eukaryotes , 2003, BMC Bioinformatics.
[25] M. Martindale,et al. The origin of mesoderm in phoronids. , 2002, Developmental biology.
[26] Gonzalo Giribet,et al. Current advances in the phylogenetic reconstruction of metazoan evolution. A new paradigm for the Cambrian explosion? , 2002, Molecular phylogenetics and evolution.
[27] T. Gojobori,et al. Bmc Evolutionary Biology the Evolutionary Position of Nematodes , 2022 .
[28] Anton J. Enright,et al. An efficient algorithm for large-scale detection of protein families. , 2002, Nucleic acids research.
[29] D. Swofford. PAUP*: Phylogenetic analysis using parsimony (*and other methods), Version 4.0b10 , 2002 .
[30] B. Schierwater,et al. Speciation and phylogeography in the cosmopolitan marine moon jelly, Aurelia sp , 2002, BMC Evolutionary Biology.
[31] Gonzalo Giribet,et al. Arthropod phylogeny based on eight molecular loci and morphology , 2001, Nature.
[32] D. Tautz,et al. Mitochondrial protein phylogeny joins myriapods with chelicerates , 2001, Nature.
[33] John P. Huelsenbeck,et al. MRBAYES: Bayesian inference of phylogenetic trees , 2001, Bioinform..
[34] A. Schmidt‐Rhaesa,et al. Tardigrades - Are They Really Miniaturized Dwarfs? * , 2001 .
[35] W. Wheeler,et al. Triploblastic relationships with emphasis on the acoelomates and the position of Gnathostomulida, Cycliophora, Plathelminthes, and Chaetognatha: a combined approach of 18S rDNA sequences and morphology. , 2000, Systematic biology.
[36] S. Dongen. Graph clustering by flow simulation , 2000 .
[37] Wei Qian,et al. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. , 2000, Molecular biology and evolution.
[38] S. Dongen. A cluster algorithm for graphs , 2000 .
[39] M. P. Cummings,et al. PAUP* Phylogenetic analysis using parsimony (*and other methods) Version 4 , 2000 .
[40] Wilkinson,et al. Testing the phylogenetic stability of early tetrapods , 1999, Journal of theoretical biology.
[41] R. Raff,et al. Evidence for a clade of nematodes, arthropods and other moulting animals , 1997, Nature.
[42] C. Nielsen. Animal Evolution: Interrelationships of the Living Phyla , 1995 .
[43] J. Lake,et al. Evidence from 18S ribosomal DNA that the lophophorates are protostome animals , 1995, Science.
[44] S. Morris,et al. Articulated Halkieriids from the Lower Cambrian of North Greenland and their Role in Early Protostome Evolution , 1995 .
[45] J. Thompson,et al. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. , 1994, Nucleic acids research.