Homogenization of Large-Scale Movement Models in Ecology with Application to the Spread of Chronic Wasting Disease in Mule Deer

A difficulty in using diffusion models to predict large scale animal population dispersal is that individuals move differently based on local information (as opposed to gradients) in differing habitat types. This can be accommodated by using ecological diffusion. However, real environments are often spatially complex, limiting application of a direct approach. Homogenization for partial differential equations has long been applied to Fickian diffusion (in which average individual movement is organized along gradients of habitat and population density). We derive a homogenization procedure for ecological diffusion and apply it to a simple model for chronic wasting disease in mule deer. Homogenization allows us to determine the impact of small scale (10–100 m) habitat variability on large scale (10–100 km) movement. The procedure generates asymptotic equations for solutions on the large scale with parameters defined by small-scale variation. The simplicity of this homogenization procedure is striking when compared to the multi-dimensional homogenization procedure for Fickian diffusion,and the method will be equally straightforward for more complex models.

[1]  J. Brown What is Applied Mathematics? , 1997 .

[2]  M. Boyce,et al.  Evaluating resource selection functions , 2002 .

[3]  Advantageous Change of Support in Inverse Implementations of Statistical Differential Equation Models , 2009 .

[4]  A. M. Turing,et al.  The chemical basis of morphogenesis , 1952, Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences.

[5]  S. Higgins,et al.  Modeling invasive plant spread: the role of plant-environment interactions and model structure. , 1996 .

[6]  Kimberly A. With The Landscape Ecology of Invasive Spread , 2002 .

[7]  Mevin B. Hooten,et al.  Computationally Efficient Statistical Differential Equation Modeling Using Homogenization , 2013 .

[8]  Viral B. Shah,et al.  Using circuit theory to model connectivity in ecology, evolution, and conservation. , 2008, Ecology.

[9]  J. G. Skellam Random dispersal in theoretical populations , 1951, Biometrika.

[10]  J. Pastor,et al.  Stable limit cycles and the paradox of enrichment in a model of chronic wasting disease. , 2011, Ecological applications : a publication of the Ecological Society of America.

[11]  Devin S Johnson,et al.  A General Framework for the Analysis of Animal Resource Selection from Telemetry Data , 2008, Biometrics.

[12]  Otso Ovaskainen,et al.  Patterns of abundance and movement in relation to landscape structure: a study of a common scarab (Canthon cyanellus cyanellus) in Southern Mexico , 2007, Landscape Ecology.

[13]  E. Williams,et al.  CHRONIC WASTING DISEASE OF CAPTIVE MULE DEER: A SPONGIFORM ENCEPHALOPATHY1 , 1980, Journal of wildlife diseases.

[14]  B. Danielson,et al.  Spatially Explicit Population Models: Current Forms and Future Uses , 1995 .

[15]  Paul R. Moorcroft,et al.  Home range analysis using a mechanistic home range model , 1999 .

[16]  N Thompson Hobbs,et al.  Linking chronic wasting disease to mule deer movement scales: a hierarchical Bayesian approach. , 2006, Ecological applications : a publication of the Ecological Society of America.

[17]  Otso Ovaskainen,et al.  Analytical and numerical tools for diffusion-based movement models. , 2008, Theoretical population biology.

[18]  Kenneth P. Burnham,et al.  HUMAN LAND USE INFLUENCES CHRONIC WASTING DISEASE PREVALENCE IN MULE DEER , 2005 .

[19]  H. Risken Fokker-Planck Equation , 1984 .

[20]  J. R. Powell,et al.  Ecological Variables Affecting the Dispersal Behavior of Drosophila pseudoobscura and Its Relatives , 1979, The American Naturalist.

[21]  J. Murray,et al.  On pattern formation mechanisms for lepidopteran wing patterns and mammalian coat markings. , 1981, Philosophical transactions of the Royal Society of London. Series B, Biological sciences.

[22]  Thomas Hillen,et al.  Spatial dynamics in ecology , 2009 .

[23]  N. Shigesada,et al.  Biological Invasions: Theory and Practice , 1997 .

[24]  E. Williams,et al.  EPIZOOTIOLOGY OF CHRONIC WASTING DISEASE IN FREE-RANGING CERVIDS IN COLORADO AND WYOMING , 2000, Journal of wildlife diseases.

[25]  H. Risken The Fokker-Planck equation : methods of solution and applications , 1985 .

[26]  M. Garlick,et al.  A MULTI-STAGE MODEL FOR QUANTITATIVE PCR , 2008 .

[27]  Simon A. Levin,et al.  Spread of invading organisms , 1990, Landscape Ecology.

[28]  M. Holmes Introduction to Perturbation Methods , 1995 .

[29]  M. Hooten,et al.  A general science-based framework for dynamical spatio-temporal models , 2010 .

[30]  Michael W. Miller,et al.  Prion disease: Horizontal prion transmission in mule deer , 2003, Nature.

[31]  Ronald Christensen,et al.  Bayesian Point Estimation Using the Predictive Distribution , 1985 .

[32]  Michael W Miller,et al.  Utah State University From the SelectedWorks of Mary Conner 2005 Epidemiology of Chronic Wasting Disease in Free-Ranging Mule Deer : Spatial , Temporal , and Demographic Influences on Observed Prevalence Patterns , 2018 .

[33]  R. Pech,et al.  A model of the velocity of advance of foot and mouth disease in feral pigs , 1990 .

[34]  Niklaus E. Zimmermann,et al.  MULTISCALE ANALYSIS OF ACTIVE SEED DISPERSAL CONTRIBUTES TO RESOLVING REID'S PARADOX , 2004 .

[35]  G. Odell,et al.  Swarms of Predators Exhibit "Preytaxis" if Individual Predators Use Area-Restricted Search , 1987, The American Naturalist.

[36]  Paul J Rathouz,et al.  Accounting for animal movement in estimation of resource selection functions: sampling and data analysis. , 2009, Ecology.

[37]  M. Miller,et al.  MOVEMENT PATTERNS AND SPATIAL EPIDEMIOLOGY OF A PRION DISEASE IN MULE DEER POPULATION UNITS , 2004 .

[38]  Devin S Johnson,et al.  Continuous-time correlated random walk model for animal telemetry data. , 2008, Ecology.

[39]  Leslie A Real,et al.  Spatial dynamics and genetics of infectious diseases on heterogeneous landscapes , 2007, Journal of The Royal Society Interface.

[40]  Siem Jan Koopman,et al.  Time Series Analysis by State Space Methods , 2001 .

[41]  N. Swindale A model for the formation of ocular dominance stripes , 1980, Proceedings of the Royal Society of London. Series B. Biological Sciences.

[42]  David L Smith,et al.  Predicting the spatial dynamics of rabies epidemics on heterogeneous landscapes , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[43]  J. Wickham,et al.  Completion of the 2001 National Land Cover Database for the conterminous United States , 2007 .

[44]  R. Wiggins Prion Stability and Infectivity in the Environment , 2008, Neurochemical Research.

[45]  C. Packer Lions , 2010, Current Biology.

[46]  A. Aguzzi,et al.  Chronic wasting disease. , 2007, Biochimica et biophysica acta.

[47]  J. Murray,et al.  On the spatial spread of rabies among foxes. , 1992, Proceedings of the Royal Society of London. Series B, Biological sciences.

[48]  P. Kareiva,et al.  Analyzing insect movement as a correlated random walk , 1983, Oecologia.

[49]  O. C. Wallmo Mule and black-tailed deer of North America. , 1982 .

[50]  C. Sigurdson,et al.  A prion disease of cervids: chronic wasting disease. , 2008, Veterinary research.

[51]  R. Ostfeld,et al.  Spatial epidemiology: an emerging (or re-emerging) discipline. , 2005, Trends in ecology & evolution.

[52]  E. Williams Chronic Wasting Disease , 2005, Veterinary pathology.

[53]  James O Lloyd-Smith,et al.  Dynamics and management of infectious disease in colonizing populations. , 2006, Ecology.

[54]  Peter Turchin,et al.  Translating Foraging Movements in Heterogeneous Environments into the Spatial Distribution of Foragers , 1991 .

[55]  R. Veit,et al.  Partial Differential Equations in Ecology: Spatial Interactions and Population Dynamics , 1994 .

[56]  Frithjof Lutscher,et al.  Dispersal in heterogeneous habitats: thresholds, spatial scales, and approximate rates of spread. , 2009, Ecology.

[57]  R. May,et al.  Population biology of infectious diseases: Part I , 1979, Nature.

[58]  P. Lukacs,et al.  Lions and Prions and Deer Demise , 2008, PloS one.

[59]  R. Fisher THE WAVE OF ADVANCE OF ADVANTAGEOUS GENES , 1937 .

[60]  Otso Ovaskainen,et al.  Biased movement at a boundary and conditional occupancy times for diffusion processes , 2003, Journal of Applied Probability.

[61]  G. Barrett,et al.  Effects of landscape spatial structure on movement patterns of the hispid cotton rat (Sigmodon hispidus) , 1999, Landscape Ecology.

[62]  Mevin B. Hooten,et al.  Agent-Based Inference for Animal Movement and Selection , 2010 .

[63]  Christian P. Robert,et al.  Monte Carlo Statistical Methods , 2005, Springer Texts in Statistics.

[64]  Michael W Miller,et al.  Epidemiology of Chronic Wasting Disease in Captive White-Tailed and Mule Deer , 2004, Journal of wildlife diseases.

[65]  A. R. Mitchell,et al.  The Finite Difference Method in Partial Differential Equations , 1980 .

[66]  Christopher J. Johnson,et al.  Oral Transmissibility of Prion Disease Is Enhanced by Binding to Soil Particles , 2007, PLoS pathogens.

[67]  N. Thompson Hobbs,et al.  Environmental Sources of Prion Transmission in Mule Deer , 2004, Emerging infectious diseases.

[68]  J. Murray,et al.  A simple model for the spatial spread and control of rabies. , 1985, Journal of theoretical biology.

[69]  André A Dhondt,et al.  Spatial spread of an emerging infectious disease: conjunctivitis in House Finches. , 2006, Ecology.

[70]  Leslie R. McFarlane,et al.  Breeding Behavior and Space Use of Male and Female Mule Deer: An Examination of Potential Risk Differences for Chronic Wasting Disease Infection , 2007 .

[71]  C. Patlak Random walk with persistence and external bias , 1953 .

[72]  N. T. Hobbs,et al.  THE ROLE OF PREDATION IN DISEASE CONTROL: A COMPARISON OF SELECTIVE AND NONSELECTIVE REMOVAL ON PRION DISEASE DYNAMICS IN DEER , 2011, Journal of wildlife diseases.

[73]  John G. Kie,et al.  Habitat selection and survival of mule deer : Tradeoffs associated with migration , 1997 .

[74]  John E. Gross,et al.  Chronic wasting disease in mule deer: disease dynamics and control. , 2001 .

[75]  Christopher A. Barnes,et al.  Completion of the 2006 National Land Cover Database for the conterminous United States. , 2011 .

[76]  R. May,et al.  Population Biology of Infectious Diseases , 1982, Dahlem Workshop Reports.

[77]  Kenneth L. Denman,et al.  Diffusion and Ecological Problems: Modern Perspectives.Second Edition. Interdisciplinary Applied Mathematics, Volume 14.ByAkira Okuboand, Simon A Levin.New York: Springer.$64.95. xx + 467 p; ill.; author and subject indexes. ISBN: 0–387–98676–6. 2001. , 2003 .

[78]  J. Murray,et al.  On the spatial spread of rabies among foxes , 1986, Proceedings of the Royal Society of London. Series B. Biological Sciences.

[79]  Craig J. Johns,et al.  A Dynamic Spatial Model for Chronic Wasting Disease in Colorado , 2006 .

[80]  N Thompson Hobbs,et al.  Dynamics of prion disease transmission in mule deer. , 2006, Ecological applications : a publication of the Ecological Society of America.

[81]  A. Ōkubo,et al.  Di?usion and ecological problems: mathematical models , 1980 .

[82]  Michael W Miller,et al.  A Natural Case of Chronic Wasting Disease in a Free-ranging Moose (Alces alces shirasi) , 2007, Journal of wildlife diseases.

[83]  Shannon L Bartelt-Hunt,et al.  Prions in the environment , 2008, Prion.

[84]  M. Miller,et al.  Chronic wasting disease in deer and elk in North America. , 2002, Revue scientifique et technique.

[85]  J. G. Skellam Random dispersal in theoretical populations , 1951, Biometrika.

[86]  M K Tourtellot,et al.  The problem of movelength and turn definition in analysis of orientation data. , 1991, Journal of theoretical biology.

[87]  M. Boyce,et al.  Relating populations to habitats using resource selection functions. , 1999, Trends in ecology & evolution.

[88]  P. Turchin Quantitative Analysis Of Movement , 1998 .

[89]  Timothy H Keitt,et al.  Spatial and Temporal Heterogeneity Explain Disease Dynamics in a Spatially Explicit Network Model , 2008, The American Naturalist.

[90]  Henrik Madsen,et al.  Estimating animal behavior and residency from movement data , 2011 .

[91]  M. Conner,et al.  RELATIVE VULNERABILITY OF CHRONIC WASTING DISEASE INFECTED MULE DEER TO VEHICLE COLLISIONS , 2005, Journal of wildlife diseases.

[92]  R S Cantrell,et al.  Diffusion models for population dynamics incorporating individual behavior at boundaries: applications to refuge design. , 1999, Theoretical population biology.

[93]  L. Demaret,et al.  A SIMPLE BIOCLOGGING MODEL THAT ACCOUNTS FOR SPATIAL SPREADING OF BACTERIA , 2009 .

[94]  Josh M. London,et al.  Bayesian Inference for Animal Space Use and Other Movement Metrics , 2011 .

[95]  William E. Fitzgibbon,et al.  A Mathematical Model of the Spread of Feline Leukemia Virus (FeLV) Through a Highly Heterogeneous Spatial Domain , 2001, SIAM J. Math. Anal..

[96]  Sigurdur Sigurdarson,et al.  Infectious agent of sheep scrapie may persist in the environment for at least 16 years. , 2006, The Journal of general virology.

[97]  P. Turchin,et al.  Quantifying Dispersal of Southern Pine Beetles with Mark-Recapture Experiments and a Diffusion Model. , 1993, Ecological applications : a publication of the Ecological Society of America.

[98]  J. Powell,et al.  Mathematically modeling PCR: an asymptotic approximation with potential for optimization. , 2010, Mathematical biosciences and engineering : MBE.

[99]  Rosa M. Crujeiras,et al.  Comments on: A general science-based framework for nonlinear spatio-temporal dynamical models , 2010 .

[100]  T. Kucera Social Behavior and Breeding System of the Desert Mule Deer , 1978 .

[101]  Robert E Rolley,et al.  SPATIAL EPIDEMIOLOGY OF CHRONIC WASTING DISEASE IN WISCONSIN WHITE-TAILED DEER , 2006, Journal of wildlife diseases.

[102]  Partial Differential Equations in Ecology , .

[103]  P. Cross,et al.  Infectious Disease in Cervids of North America , 2008, Annals of the New York Academy of Sciences.

[104]  Otso Ovaskainen,et al.  HABITAT-SPECIFIC MOVEMENT PARAMETERS ESTIMATED USING MARK–RECAPTURE DATA AND A DIFFUSION MODEL , 2004 .

[105]  Alan D. Woolf,et al.  Chronic Wasting Disease in Deer and Elk: a Critique of Current Models and Their Application , 2003 .

[106]  Noriko Kinezaki,et al.  Modeling biological invasions into periodically fragmented environments. , 2003, Theoretical population biology.