Implications of in situ calcification for photosynthesis in a ~3.3 Ga-old microbial biofilm from the Barberton greenstone belt, South Africa

Timing the appearance of photosynthetic microorganisms is crucial to understanding the evolution of life on Earth. The ability of the biosphere to use sunlight as a source of energy (photoautotrophy) would have been essential for increasing biomass and for increasing the biogeochemical capacity of all prokaryotes across the range of redox reactions that support life. Typical proxies for photosynthesis in the rock record include features, such as a mat-like, laminated morphology (stratiform, domical, conical) often associated with bulk geochemical signatures, such as calcification, and a fractionated carbon isotope signature. However, to date, in situ, calcification related to photosynthesis has not been demonstrated in the oldest known microbial mats. We here use in situ nanometer-scale techniques to investigate the structural and compositional architecture in a 3.3 billion-year (Ga) old microbial biofilm from the Barberton greenstone belt, thus documenting in situ calcification that was most likely related to anoxygenic photosynthesis. The Josefsdal Chert Microbial Biofilm (JCMB) formed in a littoral (photic) environment. It is characterised by a distinct vertical structural and compositional organisation. The lower part is calcified in situ by aragonite, progressing upwards into uncalcified kerogen characterised by up to 1% sulphur, followed by an upper layer that contains intact filaments at the surface. Crystallites of pseudomorphed pyrite are also associated with the biofilm suggesting calcification related to the activity of heterotrophic sulphur reducing bacteria. In this anoxygenic, nutrient-limited environment, the carbon required by the sulphur reducing bacteria could only have been produced by photoautotrophy. We conclude that the Josfsdal Chert Microbial Biofilm was formed by a consortium of anoxygenic microorganisms, including photosynthesisers and sulphur reducing bacteria.

[1]  K. Towe Earth's Early Atmosphere. , 1987, Science.

[2]  N. Banerjee,et al.  Preservation of ∼3.4–3.5 Ga microbial biomarkers in pillow lavas and hyaloclastites from the Barberton Greenstone Belt, South Africa , 2006 .

[3]  M. Walsh,et al.  Microfossils and possible microfossils from the Early Archean Onverwacht Group, Barberton Mountain Land, South Africa. , 1992, Precambrian research.

[4]  S. Macko,et al.  Organic geochemistry : principles and applications , 1993 .

[5]  N. Noffke The criteria for the biogeneicity of microbially induced sedimentary structures (MISS) in Archean and younger, sandy deposits , 2009 .

[6]  M. Walsh,et al.  Stromatolites from the 3,300–3,500-Myr Swaziland Supergroup, Barberton Mountain Land, South Africa , 1986, Nature.

[7]  A. Miyake,et al.  Precipitation diagram of calcium carbonate polymorphs: its construction and significance , 2009, Journal of physics. Condensed matter : an Institute of Physics journal.

[8]  B. Jørgensen,et al.  Lipid Biomarker Patterns of Phosphogenic Sediments from Upwelling Regions , 2008 .

[9]  D. Lowe Abiological origin of described stromatolites older than 3.2 Ga. , 1994, Geology.

[10]  F. Westall Influence of cell wall composition on the fossilisation of bacteria and the implications for the search for early life forms , 1997 .

[11]  T. Lowenstein,et al.  Criteria for the recognition of salt-pan evaporites , 1985 .

[12]  R. Buick The antiquity of oxygenic photosynthesis: evidence from stromatolites in sulphate-deficient Archaean lakes. , 1992, Science.

[13]  L. Lemelle,et al.  In situ imaging of organic sulfur in 700–800 My-old Neoproterozoic microfossils using X-ray spectromicroscopy at the S K-edge , 2008 .

[14]  Donald R. Lowe,et al.  Stromatolites 3,400-Myr old from the Archean of Western Australia , 1980, Nature.

[15]  Donald R. Lowe,et al.  Photosynthetic microbial mats in the 3,416-Myr-old ocean , 2004, Nature.

[16]  R Buick,et al.  Archean molecular fossils and the early rise of eukaryotes. , 1999, Science.

[17]  Frances Westall,et al.  Volcaniclastic habitats for early life on Earth and Mars : A case study from 3.5 Ga-old rocks from the Pilbara, Australia , 2011 .

[18]  Abigail C. Allwood,et al.  Stromatolite reef from the Early Archaean era of Australia , 2006, Nature.

[19]  M. Rosing,et al.  13C-Depleted carbon microparticles in >3700-Ma sea-floor sedimentary rocks from west greenland , 1999, Science.

[20]  K. D. McKeegan,et al.  Evidence for life on Earth before 3,800 million years ago , 1996, Nature.

[21]  B. Cavalazzi,et al.  Microbial fabrics from Neogene cold seep carbonates, Northern Apennine, Italy , 2005 .

[22]  M. Schidlowski A 3,800-million-year isotopic record of life from carbon in sedimentary rocks , 1988, Nature.

[23]  M. Henk,et al.  Beggiatoa in microbial mats at hydrocarbon vents in the Gulf of Mexico and Warm Mineral Springs, Florida , 1994 .

[24]  B. Jones,et al.  Taphonomy of Silicified Filamentous Microbes in Modern Geothermal Sinters—Implications for Identification , 2001 .

[25]  Isik Kanik,et al.  Controls on development and diversity of Early Archean stromatolites , 2009 .

[26]  D. Gerneke,et al.  Early Archean fossil bacteria and biofilms in hydrothermally-influenced sediments from the Barberton greenstone belt, South Africa , 2001 .

[27]  L. Marinangeli,et al.  Microbial signatures in sabkha evaporite deposits of Chott el Gharsa (Tunisia) and their astrobiological implications , 2006 .

[28]  C. Cosmovici,et al.  Astronomical and biochemical origins and the search for life in the universe , 1997 .

[29]  Roger E. Summons,et al.  2-Methylhopanoids as biomarkers for cyanobacterial oxygenic photosynthesis , 1999, Nature.

[30]  David Wacey,et al.  Stromatolites in the approximately 3400 Ma Strelley Pool Formation, Western Australia: examining biogenicity from the macro- to the nano-scale. , 2010, Astrobiology.

[31]  M. Thiemens,et al.  Atmospheric influence of Earth's earliest sulfur cycle , 2000, Science.

[32]  Y. Koizumi,et al.  Vertical distributions of sulfate-reducing bacteria and methane-producing archaea quantified by oligonucleotide probe hybridization in the profundal sediment of a mesotrophic lake. , 2003, FEMS microbiology ecology.

[33]  J. Blank,et al.  Astrobiology: Future Perspectives , 2005 .

[34]  I. Power,et al.  The hydromagnesite playas of Atlin, British Columbia, Canada: A biogeochemical model for CO2 sequestration , 2008 .

[35]  D. G. Adams,et al.  Microbial–silica interactions in Icelandic hot spring sinter: possible analogues for some Precambrian siliceous stromatolites , 2001 .

[36]  F. Westall Origins and Evolution of Life: Early life: nature, distribution and evolution , 2011 .

[37]  B. Jørgensen,et al.  Population study of the filamentous sulfur bacteria Thioploca spp. off the Bay of Concepcion, Chile , 2000 .

[38]  Manfred Schidlowski,et al.  Carbon isotopes as biogeochemical recorders of life over 3.8 Ga of Earth history: evolution of a concept , 2001 .

[39]  R. Reid,et al.  Processes of carbonate precipitation in modern microbial mats , 2009 .

[40]  G. Bollinger,et al.  Population Study , 2020, Definitions.

[41]  Bjarke Bak Christensen,et al.  In Situ Gene Expression in Mixed-Culture Biofilms: Evidence of Metabolic Interactions between Community Members , 1998, Applied and Environmental Microbiology.

[42]  D. Lowe,et al.  The origin of carbonaceous matter in pre-3.0 Ga greenstone terrains: A review and new evidence from the 3.42 Ga Buck Reef Chert , 2006 .

[43]  Gordon E. Brown,et al.  Microbially influenced formation of 2,724-million-year-old stromatolites , 2008 .

[44]  M. McLachlan,et al.  Using the in situ lift-out technique to prepare TEM specimens on a single-beam FIB instrument , 2008 .

[45]  Christian Défarge,et al.  On the appearance of cyanobacterial calcification in modern stromatolites , 1994 .

[46]  I. Fletcher,et al.  Reassessing the first appearance of eukaryotes and cyanobacteria , 2008, Nature.

[47]  A. Hofmann,et al.  Carbonaceous cherts in the Barberton greenstone belt and their significance for the study of early life in the Archean record. , 2007, Astrobiology.

[48]  Jacobsen,et al.  Soft X‐ray spectroscopy from image sequences with sub‐100 nm spatial resolution , 2000, Journal of microscopy.

[49]  D. Stahl,et al.  Sulphate reduction and vertical distribution of sulphate-reducing bacteria quantified by rRNA slot-blot hybridization in a coastal marine sediment. , 1999, Environmental microbiology.

[50]  Andrew H. Knoll,et al.  Exceptional preservation of photosynthetic organisms in silicified carbonates and silicified peats , 1985 .

[51]  G. Bock,et al.  Evolution of hydrothermal ecosystems on Earth (and Mars , 1998 .

[52]  B. Jørgensen,et al.  Distribution of sulfate-reducing bacteria, O2, and H2S in photosynthetic biofilms determined by oligonucleotide probes and microelectrodes , 1993, Applied and environmental microbiology.

[53]  D. Lowe Restricted shallow-water sedimentation of Early Archean stromatolitic and evaporitic strata of the Strelley Pool Chert, Pilbara Block, Western Australia , 1983 .

[54]  J. Schopf,et al.  Microfossils of the Early Archean Apex Chert: New Evidence of the Antiquity of Life , 1993, Science.

[55]  J. William Schopf,et al.  Earth's earliest biosphere : its origin and evolution , 1983 .

[56]  Burkhard Kaulich,et al.  THE SCANNING X-RAY MICROPROBE AT THE ESRF "X-RAY MICROSCOPY" BEAMLINE , 2002 .

[57]  C. D. de Ronde,et al.  Implications of a 3.472–3.333 Gyr-old subaerial microbial mat from the Barberton greenstone belt, South Africa for the UV environmental conditions on the early Earth , 2006, Philosophical Transactions of the Royal Society B: Biological Sciences.

[58]  D. Canfield,et al.  Calibration of Sulfate Levels in the Archean Ocean , 2002, Science.

[59]  D. Prieur,et al.  Experimental silicification of the extremophilic Archaea Pyrococcus abyssi and Methanocaldococcus jannaschii: applications in the search for evidence of life in early Earth and extraterrestrial rocks , 2009, Geobiology.

[60]  H. Hofmann Precambrian microflora, Belcher Islands, Canada; significance and systematics , 1976 .

[61]  Donald E. Canfield,et al.  The Archean sulfur cycle and the early history of atmospheric oxygen. , 2000, Science.

[62]  Aivo Lepland,et al.  Reassessing the evidence for the earliest traces of life , 2002, Nature.

[63]  B. Jørgensen,et al.  Dense populations of a giant sulfur bacterium in Namibian shelf sediments. , 1999, Science.

[64]  A. Steele,et al.  Questioning the evidence for Earth's oldest fossils , 2002, Nature.

[65]  G. Stevens,et al.  Metamorphism of the granite-greenstone terrane south of the Barberton greenstone belt, South Africa: an insight into the tectono-thermal evolution of the "lower" portions of the Onverwacht Group , 2002 .

[66]  A. Reimer,et al.  Photosynthesis-Induced Biofilm Calcification and Calcium Concentrations in Phanerozoic Oceans , 2001, Science.

[67]  K. Milliken,et al.  Geochemistry of Preserved Permian Aragonitic Cements in the Tepees of the Guadalupe Mountains, West Texas and New Mexico, U.S.A. , 2008 .

[68]  A. Hofmann,et al.  Silica alteration zones in the Barberton greenstone belt: A window into subseafloor processes 3.5-3.3 Ga ago , 2008 .

[69]  M. Tice Environmental controls on photosynthetic microbial mat distribution and morphogenesis on a 3.42 Ga clastic-starved platform. , 2009, Astrobiology.

[70]  W. Fyfe,et al.  Catalysis, inhibition, and the calcite-aragonite problem; [Part] 1, The aragonite-calcite transformation , 1968 .

[71]  W. Seyfried,et al.  Rates of aragonite conversion to calcite in dilute aqueous fluids at 50 to 100°C: experimental calibration using Ca-isotope attenuation , 1999 .

[72]  R. Castenholz,et al.  Diel Migrations of Microorganisms within a Benthic, Hypersaline Mat Community , 1994, Applied and environmental microbiology.

[73]  D. Groves,et al.  A new microfossil assemblage from the Archaean of Western Australia , 1978, Nature.

[74]  M. Heldal,et al.  Content of carbon, nitrogen, oxygen, sulfur and phosphorus in native aquatic and cultured bacteria , 1996 .

[75]  D. Newman,et al.  Microbial nucleation of calcium carbonate in the Precambrian , 2003 .

[76]  H. J. Hofmann,et al.  Origin of 3.45 Ga coniform stromatolites in Warrawoona Group, Western Australia , 1999 .

[77]  F. Westall Early Life on Earth: The Ancient Fossil Record , 2004 .

[78]  D C Nelson,et al.  Use of reduced sulfur compounds by Beggiatoa sp , 1981, Journal of bacteriology.

[79]  Frede Thingstad,et al.  Elemental composition of single cells of various strains of marine Prochlorococcus and Synechococcus using X‐ray microanalysis , 2003 .

[80]  W. Altermann,et al.  Microfossils from the Neoarchean Campbell Group, Griqualand West Sequence of the Transvaal Supergroup, and their paleoenvironmental and evolutionary implications. , 1995, Precambrian research.

[81]  P. Sonnenfeld Sedimentology and geochemistry of modern and ancient saline lakes , 1995 .

[82]  I. Jarvis Phosphate deposits of the world volume 3: Neogene to modern phosphorites , 1992 .

[83]  F. Sansone,et al.  Texture of Microbial Sediments Revealed by Cryo-Scanning Electron Microscopy , 1996 .

[84]  S. Joye,et al.  Chemotrophic microbial mats and their potential for preservation in the rock record. , 2009, Astrobiology.