Reading the Book of Memory: Sparse Sampling versus Dense Mapping of Connectomes

[1]  D Marr,et al.  Simple memory: a theory for archicortex. , 1971, Philosophical transactions of the Royal Society of London. Series B, Biological sciences.

[2]  Sen Song,et al.  Highly Nonrandom Features of Synaptic Connectivity in Local Cortical Circuits , 2005, PLoS biology.

[3]  R. Masland.  Neuronal diversity in the retina , 2001, Current Opinion in Neurobiology.

[4]  Yasushi Miyashita,et al.  Dendritic spine geometry is critical for AMPA receptor expression in hippocampal CA1 pyramidal neurons , 2001, Nature Neuroscience.

[5]  G. Shepherd,et al.  Three-Dimensional Structure and Composition of CA3→CA1 Axons in Rat Hippocampal Slices: Implications for Presynaptic Connectivity and Compartmentalization , 1998, The Journal of Neuroscience.

[6]  Professor Dr. Guy A. Orban.  Neuronal Operations in the Visual Cortex , 1983, Studies of Brain Function.

[7]  S. Hell.  Far-Field Optical Nanoscopy , 2007, Science.

[8]  R. Mooney.  Different Subthreshold Mechanisms Underlie Song Selectivity in Identified HVc Neurons of the Zebra Finch , 2000, The Journal of Neuroscience.

[9]  L. Nadel,et al.  The Hippocampus as a Cognitive Map , 1978 .

[10]  Olaf Sporns,et al.  The Human Connectome: A Structural Description of the Human Brain , 2005, PLoS Comput. Biol..

[11]  K. Svoboda,et al.  Genetic Dissection of Neural Circuits , 2008, Neuron.

[12]  JOSEP DÍAZ,et al.  A survey of graph layout problems , 2002, CSUR.

[13]  H. Sompolinsky,et al.  Theory of orientation tuning in visual cortex. , 1995, Proceedings of the National Academy of Sciences of the United States of America.

[14]  L. Avery,et al.  Pharyngeal pumping continues after laser killing of the pharyngeal nervous system of C. elegans , 1989, Neuron.

[15]  R. Barlow.  Inhibitory Fields in the Limulus Lateral Eye , 1969, The Journal of general physiology.

[16]  D. Jameson,et al.  Mach bands : quantitative studies on neural networks in the retina , 1966 .

[17]  Ian R. Wickersham,et al.  Monosynaptic Restriction of Transsynaptic Tracing from Single, Genetically Targeted Neurons , 2007, Neuron.

[18]  G. Striedter.  Précis of Principles of Brain Evolution , 2006, Behavioral and Brain Sciences.

[19]  E. Callaway,et al.  Excitatory cortical neurons form fine-scale functional networks , 2005, Nature.

[20]  R. Lund,et al.  Receptive field properties of single neurons in rat primary visual cortex. , 1999, Journal of neurophysiology.

[21]  Ullrich Köthe,et al.  Segmentation of SBFSEM Volume Data of Neural Tissue by Hierarchical Classification , 2008, DAGM-Symposium.

[22]  Shun-ichi Amari,et al.  Learning Patterns and Pattern Sequences by Self-Organizing Nets of Threshold Elements , 1972, IEEE Transactions on Computers.

[23]  J. Sulston,et al.  Developmental genetics of the mechanosensory neurons of Caenorhabditis elegans. , 1981, Developmental biology.

[24]  N. Kasthuri,et al.  New Technique for Ultra-thin Serial Brain Section Imaging Using Scanning Electron Microscopy , 2007, Microscopy and Microanalysis.

[25]  J. Nathans,et al.  Quantitative analysis of neuronal morphologies in the mouse retina visualized by using a genetically directed reporter , 2004, The Journal of comparative neurology.

[26]  Donald A. Norman,et al.  Simulating a Skilled Typist: A Study of Skilled Cognitive-Motor Performance , 1982, Cogn. Sci..

[27]  P. Dudchenko.  The hippocampus as a cognitive map , 2010 .

[28]  L. Abbott,et al.  Model of song selectivity and sequence generation in area HVc of the songbird. , 2003, Journal of neurophysiology.

[29]  W. Denk,et al.  Serial Block-Face Scanning Electron Microscopy to Reconstruct Three-Dimensional Tissue Nanostructure , 2004, PLoS biology.

[30]  S. Brenner,et al.  The structure of the nervous system of the nematode Caenorhabditis elegans. , 1986, Philosophical transactions of the Royal Society of London. Series B, Biological sciences.

[31]  T. Schikorski,et al.  Quantitative Ultrastructural Analysis of Hippocampal Excitatory Synapses Materials and Methods Terminology Fixation and Embedding , 2022 .

[32]  L. C. Katz,et al.  Auditory responses in the zebra finch's motor system for song , 1981, Brain Research.

[33]  T. Schikorski,et al.  Inactivity Produces Increases in Neurotransmitter Release and Synapse Size , 2001, Neuron.

[34]  Sooyoung Chung,et al.  Functional imaging with cellular resolution reveals precise micro-architecture in visual cortex , 2005, Nature.

[35]  Misha Mahowald,et al.  A silicon model of early visual processing , 1993, Neural Networks.

[36]  S. Nelson,et al.  An emergent model of orientation selectivity in cat visual cortical simple cells , 1995, The Journal of neuroscience : the official journal of the Society for Neuroscience.

[37]  R. Masland.  Neuronal cell types , 2004, Current Biology.

[38]  S. Nelson,et al.  Probing the transcriptome of neuronal cell types , 2006, Current Opinion in Neurobiology.

[39]  Mengru Li,et al.  Stable propagation of a burst through a one-dimensional homogeneous excitatory chain model of songbird nucleus HVC. , 2006, Physical review. E, Statistical, nonlinear, and soft matter physics.

[40]  B L McNaughton,et al.  Path Integration and Cognitive Mapping in a Continuous Attractor Neural Network Model , 1997, The Journal of Neuroscience.

[41]  Vladimir N. Vapnik,et al.  The Nature of Statistical Learning Theory , 2000, Statistics for Engineering and Information Science.

[42]  Kevin L. Briggman,et al.  Towards neural circuit reconstruction with volume electron microscopy techniques , 2006, Current Opinion in Neurobiology.

[43]  K. D. Punta,et al.  An ultra-sparse code underlies the generation of neural sequences in a songbird , 2002 .

[44]  F. Nottebohm,et al.  Central control of song in the canary, Serinus canarius , 1976, The Journal of comparative neurology.

[45]  J. Bourne,et al.  Uniform Serial Sectioning for Transmission Electron Microscopy , 2006, The Journal of Neuroscience.

[46]  B. McNaughton,et al.  Independence of Firing Correlates of Anatomically Proximate Hippocampal Pyramidal Cells , 2001, The Journal of Neuroscience.

[47]  Richard Hans Robert Hahnloser,et al.  Neural Mechanisms of Vocal Sequence Generation in the Songbird , 2004, Annals of the New York Academy of Sciences.

[48]  Cori Bargmann,et al.  A circuit for navigation in Caenorhabditis elegans , 2005 .

[49]  D. Chklovskii,et al.  Wiring optimization can relate neuronal structure and function. , 2006, Proceedings of the National Academy of Sciences of the United States of America.

[50]  KM Harris,et al.  Dendritic spines of CA 1 pyramidal cells in the rat hippocampus: serial electron microscopy with reference to their biophysical characteristics , 1989, The Journal of neuroscience : the official journal of the Society for Neuroscience.

[51]  K. Lashley.  The problem of serial order in behavior , 1951 .

[52]  Jay Enoch,et al.  Mach Bands: Quantitative Studies on Neural Networks in the Retina , 1966 .

[53]  Alessandro Treves,et al.  Attractor neural networks storing multiple space representations: A model for hippocampal place fields , 1998, cond-mat/9807101.

[54]  Larry W. Swanson,et al.  The neuron classification problem , 2007, Brain Research Reviews.

[55]  C. Koch,et al.  A detailed model of the primary visual pathway in the cat: comparison of afferent excitatory and intracortical inhibitory connection schemes for orientation selectivity , 1991, The Journal of neuroscience : the official journal of the Society for Neuroscience.

[56]  J. Shendure,et al.  Advanced sequencing technologies: methods and goals , 2004, Nature Reviews Genetics.

[57]  H. Markram,et al.  Interneurons of the neocortical inhibitory system , 2004, Nature Reviews Neuroscience.

[58]  N. Burgess,et al.  Memory for serial order: A network model of the phonological loop and its timing , 1999 .

[59]  H. Eichenbaum.  Hippocampus Cognitive Processes and Neural Representations that Underlie Declarative Memory , 2004, Neuron.

[60]  U. Alon,et al.  Search for computational modules in the C. elegans brain , 2004, BMC Biology.

[61]  S. Brenner,et al.  The neural circuit for touch sensitivity in Caenorhabditis elegans , 1985, The Journal of neuroscience : the official journal of the Society for Neuroscience.

[62]  A. Leonardo,et al.  Ensemble Coding of Vocal Control in Birdsong , 2005, The Journal of Neuroscience.

[63]  R. Passingham.  The hippocampus as a cognitive map J. O'Keefe & L. Nadel, Oxford University Press, Oxford (1978). 570 pp., £25.00 , 1979, Neuroscience.

[64]  David Harel,et al.  Combining Hierarchy and Energy for Drawing Directed Graphs , 2003 .

[65]  C. Koch,et al.  Recurrent excitation in neocortical circuits , 1995, Science.

[66]  J. Kong,et al.  Diversity of ganglion cells in the mouse retina: Unsupervised morphological classification and its limits , 2005, The Journal of comparative neurology.

[67]  K. Naka,et al.  The generation and spread of S‐potentials in fish (Cyprinidae) , 1967, The Journal of physiology.

[68]  J. Sanes,et al.  Ome sweet ome: what can the genome tell us about the connectome? , 2008, Current Opinion in Neurobiology.

[69]  M. Sanders.  Handbook of Sensory Physiology , 1975 .

[70]  M. Umemiya,et al.  Ultrastructural Correlates of Quantal Synaptic Function at Single CNS Synapses , 1999, The Journal of Neuroscience.

[71]  F. Amthor,et al.  Dendritic architecture of ON-OFF direction-selective ganglion cells in the rabbit retina , 1993, Vision Research.

[72]  Terrence J. Sejnowski,et al.  ASSOCIATIVE MEMORY AND HIPPOCAMPAL PLACE CELLS , 1995 .

[73]  R. Mooney,et al.  The HVC Microcircuit: The Synaptic Basis for Interactions between Song Motor and Vocal Plasticity Pathways , 2005, The Journal of Neuroscience.

[74]  D. Perkel,et al.  Multiple cell types distinguished by physiological, pharmacological, and anatomic properties in nucleus HVc of the adult zebra finch. , 1998, Journal of neurophysiology.

[75]  J. Pierce,et al.  An ultrastructural size principle , 1994, Neuroscience.

[76]  R. Masland.  The fundamental plan of the retina , 2001, Nature Neuroscience.

[77]  Moshe Abeles,et al.  Corticonics: Neural Circuits of Cerebral Cortex , 1991 .

[78]  Richard Hans Robert Hahnloser,et al.  An ultra-sparse code underliesthe generation of neural sequences in a songbird , 2002, Nature.

[79]  H. Sebastian Seung,et al.  Intrinsic bursting enhances the robustness of a neural network model of sequence generation by avian brain area HVC , 2007, Journal of Computational Neuroscience.

[80]  Larry W Swanson,et al.  From gene networks to brain networks , 2003, Nature Neuroscience.

[81]  N. Burgess.  Memory for Serial Order : A Network Model of the Phonological Loop and its Timing , 1999 .

[82]  Joseph F. Murray,et al.  Supervised Learning of Image Restoration with Convolutional Networks , 2007, 2007 IEEE 11th International Conference on Computer Vision.

[83]  Stephen J Smith,et al.  Circuit reconstruction tools today , 2007, Current Opinion in Neurobiology.

[84]  H. K. Hartline,et al.  Inhibitory Interaction in the Retina of Limulus , 1972 .

[85]  M. Catani,et al.  The rises and falls of disconnection syndromes. , 2005, Brain : a journal of neurology.

[86]  J. Fiala,et al.  Dendrite Structure , 2001 .

[87]  J. Sanes,et al.  Molecular identification of a retinal cell type that responds to upward motion , 2008, Nature.