Correlative cellular ptychography with functionalized nanoparticles at the Fe L-edge

Precise localization of nanoparticles within a cell is crucial to the understanding of cell-particle interactions and has broad applications in nanomedicine. Here, we report a proof-of-principle experiment for imaging individual functionalized nanoparticles within a mammalian cell by correlative microscopy. Using a chemically-fixed HeLa cell labeled with fluorescent core-shell nanoparticles as a model system, we implemented a graphene-oxide layer as a substrate to significantly reduce background scattering. We identified cellular features of interest by fluorescence microscopy, followed by scanning transmission X-ray tomography to localize the particles in 3D, and ptychographic coherent diffractive imaging of the fine features in the region at high resolution. By tuning the X-ray energy to the Fe L-edge, we demonstrated sensitive detection of nanoparticles composed of a 22 nm magnetic Fe3O4 core encased by a 25-nm-thick fluorescent silica (SiO2) shell. These fluorescent core-shell nanoparticles act as landmarks and offer clarity in a cellular context. Our correlative microscopy results confirmed a subset of particles to be fully internalized, and high-contrast ptychographic images showed two oxidation states of individual nanoparticles with a resolution of ~16.5 nm. The ability to precisely localize individual fluorescent nanoparticles within mammalian cells will expand our understanding of the structure/function relationships for functionalized nanoparticles.

[1]  Three-Dimensional Reconstruction , 1996 .

[2]  J. Miao,et al.  Phase retrieval from the magnitude of the Fourier transforms of nonperiodic objects , 1998 .

[3]  J. Miao,et al.  Extending the methodology of X-ray crystallography to allow imaging of micrometre-sized non-crystalline specimens , 1999, Nature.

[4]  I. Robinson,et al.  Reconstruction of the shapes of gold nanocrystals using coherent x-ray diffraction. , 2001, Physical review letters.

[5]  J. Miao,et al.  Imaging whole Escherichia coli bacteria by using single-particle x-ray diffraction , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[6]  U. Schwertmann,et al.  Iron Oxides , 2003, SSSA Book Series.

[7]  William W. Yu,et al.  Synthesis of monodisperse iron oxide nanocrystals by thermal decomposition of iron carboxylate salts. , 2004, Chemical communications.

[8]  Jianwei Miao,et al.  Taking X-ray diffraction to the limit: macromolecular structures from femtosecond X-ray pulses and diffraction microscopy of cells with synchrotron radiation. , 2004, Annual review of biophysics and biomolecular structure.

[9]  G. Kirfel,et al.  Membrane ruffles in cell migration: indicators of inefficient lamellipodia adhesion and compartments of actin filament reorganization. , 2005, Experimental cell research.

[10]  J. Kirz,et al.  Biological imaging by soft x-ray diffraction microscopy , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[11]  S. Marchesini,et al.  High-resolution ab initio three-dimensional x-ray diffraction microscopy. , 2005, Journal of the Optical Society of America. A, Optics, image science, and vision.

[12]  Sungho Jin,et al.  Nanotoxicity of iron oxide nanoparticle internalization in growing neurons. , 2007, Biomaterials.

[13]  A. G. Cullis,et al.  Hard-x-ray lensless imaging of extended objects. , 2007, Physical review letters.

[14]  M. Radermacher Weighted Back-Projection Methods , 2007 .

[15]  S. Hädrich,et al.  Lensless diffractive imaging using tabletop coherent high-harmonic soft-X-ray beams. , 2007, Physical review letters.

[16]  J. Miao,et al.  Quantitative imaging of single, unstained viruses with coherent x rays. , 2008, Physical review letters.

[17]  O. Bunk,et al.  High-Resolution Scanning X-ray Diffraction Microscopy , 2008, Science.

[18]  J. Miao,et al.  High numerical aperture tabletop soft x-ray diffraction microscopy with 70-nm resolution , 2008, Proceedings of the National Academy of Sciences.

[19]  W. D. de Jong,et al.  Drug delivery and nanoparticles: Applications and hazards , 2008, International journal of nanomedicine.

[20]  Taeghwan Hyeon,et al.  Multifunctional uniform nanoparticles composed of a magnetite nanocrystal core and a mesoporous silica shell for magnetic resonance and fluorescence imaging and for drug delivery. , 2008, Angewandte Chemie.

[21]  J. Kirz,et al.  An assessment of the resolution limitation due to radiation-damage in x-ray diffraction microscopy. , 2005, Journal of Electron Spectroscopy and Related Phenomena.

[22]  H. Padmore,et al.  A fast, direct x-ray detection charge-coupled device. , 2009, The Review of scientific instruments.

[23]  J. Rodenburg,et al.  An improved ptychographical phase retrieval algorithm for diffractive imaging. , 2009, Ultramicroscopy.

[24]  F. Pfeiffer,et al.  Quantitative biological imaging by ptychographic x-ray diffraction microscopy , 2009, Proceedings of the National Academy of Sciences.

[25]  Tetsuya Ishikawa,et al.  Three-dimensional visualization of a human chromosome using coherent X-ray diffraction. , 2009, Physical review letters.

[26]  Rodney S. Ruoff,et al.  Transparent self-assembled films of reduced graphene oxide platelets , 2009 .

[27]  Xiaojing Huang,et al.  Soft X-ray diffraction microscopy of a frozen hydrated yeast cell. , 2009, Physical review letters.

[28]  M. Horton,et al.  Coherent X-ray diffraction from collagenous soft tissues , 2009, Proceedings of the National Academy of Sciences.

[29]  Enju Lima,et al.  Cryogenic X-ray diffraction microscopy for biological samples. , 2009, Physical review letters.

[30]  J. Miao,et al.  Quantitative 3D imaging of whole, unstained cells by using X-ray diffraction microscopy , 2010, Proceedings of the National Academy of Sciences.

[31]  O. Bunk,et al.  Ptychographic coherent diffractive imaging of weakly scattering specimens , 2010 .

[32]  J. Kirz,et al.  High-resolution x-ray diffraction microscopy of specifically labeled yeast cells , 2010, Proceedings of the National Academy of Sciences.

[33]  O. Bunk,et al.  Ptychographic X-ray computed tomography at the nanoscale , 2010, Nature.

[34]  Wolfgang Baumeister,et al.  Graphene oxide: a substrate for optimizing preparations of frozen-hydrated samples. , 2010, Journal of structural biology.

[35]  J. Kong,et al.  Graphene substrates promote adherence of human osteoblasts and mesenchymal stromal cells , 2010 .

[36]  Garth J. Williams,et al.  Single mimivirus particles intercepted and imaged with an X-ray laser , 2011, Nature.

[37]  N. Mohanty,et al.  Impermeable graphenic encasement of bacteria. , 2011, Nano letters.

[38]  O. Bunk,et al.  Phase tomography from x-ray coherent diffractive imaging projections. , 2011, Optics express.

[39]  Chwee Teck Lim,et al.  Origin of enhanced stem cell growth and differentiation on graphene and graphene oxide. , 2011, ACS nano.

[40]  T Salditt,et al.  Hard X-ray imaging of bacterial cells: nano-diffraction and ptychographic reconstruction. , 2012, Optics express.

[41]  Robert Langer,et al.  Nanoparticle delivery of cancer drugs. , 2012, Annual review of medicine.

[42]  T. Ishikawa,et al.  High-resolution and high-sensitivity phase-contrast imaging by focused hard x-ray ptychography with a spatial filter , 2013 .

[43]  J. Rodenburg,et al.  Soft X-ray spectromicroscopy using ptychography with randomly phased illumination , 2013, Nature Communications.

[44]  V. Vogel,et al.  The role of filopodia in the recognition of nanotopographies , 2013, Scientific Reports.

[45]  T. Ishikawa,et al.  Imaging fully hydrated whole cells by coherent x-ray diffraction microscopy. , 2013, Physical review letters.

[46]  M. Murnane,et al.  Tabletop nanometer extreme ultraviolet imaging in an extended reflection mode using coherent Fresnel ptychography , 2013, 1312.2049.

[47]  Anton Barty,et al.  High-throughput imaging of heterogeneous cell organelles with an X-ray laser , 2014, Nature Photonics.

[48]  Takashi Kimura,et al.  Imaging live cell in micro-liquid enclosure by X-ray laser diffraction , 2014, Nature Communications.

[49]  T. Ishikawa,et al.  Analytic 3D imaging of mammalian nucleus at nanoscale using coherent x-rays and optical fluorescence microscopy. , 2014, Biophysical journal.

[50]  S. Marchesini,et al.  Chemical composition mapping with nanometre resolution by soft X-ray microscopy , 2014, Nature Photonics.

[51]  S. Selvaraj,et al.  Mesoporous silica nanoparticles: importance of surface modifications and its role in drug delivery , 2014 .

[52]  D. Vine,et al.  Simultaneous cryo X-ray ptychographic and fluorescence microscopy of green algae , 2015, Proceedings of the National Academy of Sciences.

[53]  F. Pfeiffer,et al.  Ptychographic X-ray nanotomography quantifies mineral distributions in human dentine , 2015, Scientific Reports.

[54]  A. Mancuso,et al.  Tomography of a Cryo-immobilized Yeast Cell Using Ptychographic Coherent X-Ray Diffractive Imaging , 2015, Biophysical journal.

[55]  Chen Xu,et al.  Direct Observation of Wet Biological Samples by Graphene Liquid Cell Transmission Electron Microscopy. , 2015, Nano letters.

[56]  J. Miao,et al.  Three-dimensional coherent X-ray diffraction imaging of a whole , frozen-hydrated cell , 2014 .

[57]  Jeffrey I Zink,et al.  Functional nanovalves on protein-coated nanoparticles for in vitro and in vivo controlled drug delivery. , 2015, Small.

[58]  Michal Wojcik,et al.  Graphene-enabled electron microscopy and correlated super-resolution microscopy of wet cells , 2015, Nature Communications.

[59]  Manuel Guizar-Sicairos,et al.  Three-dimensional mass density mapping of cellular ultrastructure by ptychographic X-ray nanotomography. , 2015, Journal of structural biology.

[60]  Bosheng Zhang,et al.  High contrast 3D imaging of surfaces near the wavelength limit using tabletop EUV ptychography. , 2015, Ultramicroscopy.

[61]  J. Miao,et al.  Beyond crystallography: Diffractive imaging using coherent x-ray light sources , 2015, Science.

[62]  M. D. de Jonge,et al.  Molar concentration from sequential 2-D water-window X-ray ptychography and X-ray fluorescence in hydrated cells , 2016, Scientific Reports.

[63]  Jung-Taek Lim,et al.  Effect of graphene oxide ratio on the cell adhesion and growth behavior on a graphene oxide-coated silicon substrate , 2016, Scientific Reports.

[64]  J. Miao,et al.  Frontier methods in coherent X-ray diffraction for high-resolution structure determination , 2016, Quarterly Reviews of Biophysics.

[65]  K. Yonekura,et al.  Cryogenic coherent X-ray diffraction imaging of biological samples at SACLA: a correlative approach with cryo-electron and light microscopy. , 2016, Acta crystallographica. Section A, Foundations and advances.

[66]  V. Kouskoff,et al.  Graphene Oxide promotes embryonic stem cell differentiation to haematopoietic lineage , 2016, Scientific Reports.

[67]  Talita Perciano,et al.  SHARP: a distributed, GPU-based ptychographic solver , 2016, 1602.01448.

[68]  V. Kouskoff,et al.  Corrigendum: Graphene Oxide promotes embryonic stem cell differentiation to haematopoietic lineage , 2016, Scientific Reports.

[69]  José L Carrascosa,et al.  Intracellular nanoparticles mass quantification by near-edge absorption soft X-ray nanotomography , 2016, Scientific Reports.

[70]  J. Miao,et al.  Atomic electron tomography: 3D structures without crystals , 2016, Science.

[71]  Wah Chiu,et al.  GENFIRE: A generalized Fourier iterative reconstruction algorithm for high-resolution 3D imaging , 2017, Scientific Reports.

[72]  J. Miao,et al.  Deciphering chemical order/disorder and material properties at the single-atom level , 2016, Nature.