Survival-based bioinformatics analysis to identify hub long non-coding RNAs along with lncRNA-miRNA-mRNA network for potential diagnosis/prognosis of thyroid cancer

[1]  P. Santisteban,et al.  Identification of an interactome network between lncRNAs and miRNAs in thyroid cancer reveals SPTY2D1-AS1 as a new tumor suppressor , 2022, Scientific Reports.

[2]  A. Jemal,et al.  Global Cancer Statistics 2020: GLOBOCAN Estimates of Incidence and Mortality Worldwide for 36 Cancers in 185 Countries , 2021, CA: a cancer journal for clinicians.

[3]  J. Vencovský,et al.  Plasma Hsp90 levels in patients with systemic sclerosis and relation to lung and skin involvement: a cross-sectional and longitudinal study , 2021, Scientific Reports.

[4]  D. Führer,et al.  Significance of nuclear cathepsin V in normal thyroid epithelial and carcinoma cells. , 2020, Biochimica et biophysica acta. Molecular cell research.

[5]  L. Hui,et al.  MicroRNA let-7b inhibits cell proliferation via upregulation of p21 in hepatocellular carcinoma , 2020, Cell & Bioscience.

[6]  P. Guzzi,et al.  Non-coding RNAs in cancer: platforms and strategies for investigating the genomic “dark matter” , 2020, Journal of experimental & clinical cancer research : CR.

[7]  Weiqin Chang,et al.  The Role of Long Non-Coding RNAs in Thyroid Cancer , 2020, Frontiers in Oncology.

[8]  Zhiwei Liao,et al.  GGCT promotes colorectal cancer migration and invasion via epithelial-mesenchymal transition , 2020, Oncology letters.

[9]  E. Morii,et al.  FAM111B enhances proliferation of KRAS‐driven lung adenocarcinoma by degrading p16 , 2020, Cancer science.

[10]  Chuanyuan Wei,et al.  Hsa-let-7b Suppresses Cell Proliferation by Targeting UHRF1 in Melanoma , 2019, Cancer investigation.

[11]  Haiping Xiao.  MiR-7-5p suppresses tumor metastasis of non-small cell lung cancer by targeting NOVA2 , 2019, Cellular & Molecular Biology Letters.

[12]  Bin Guo,et al.  Long Noncoding RNA (lncRNA)-Mediated Competing Endogenous RNA Networks Provide Novel Potential Biomarkers and Therapeutic Targets for Colorectal Cancer , 2019, International journal of molecular sciences.

[13]  J. Sosa,et al.  Evolving Understanding of the Epidemiology of Thyroid Cancer. , 2019, Endocrinology and metabolism clinics of North America.

[14]  Michelle Giglio,et al.  Human Disease Ontology 2018 update: classification, content and workflow expansion , 2018, Nucleic Acids Res..

[15]  M. Mokhtari,et al.  Evaluation of Diagnostic Utility of Immunohistochemistry Markers of TROP-2 and HBME-1 in the Diagnosis of Thyroid Carcinoma , 2018, European Thyroid Journal.

[16]  Yifei Cai,et al.  Competing Endogenous RNA Regulations in Neurodegenerative Disorders: Current Challenges and Emerging Insights , 2018, Front. Mol. Neurosci..

[17]  Jian Zhang,et al.  Hsa-let-7b inhibits cell proliferation by targeting PLK1 in HCC. , 2018, Gene.

[18]  Ruidong Li,et al.  GDCRNATools: an R/Bioconductor package for integrative analysis of lncRNA, miRNA, and mRNA data in GDC , 2017, bioRxiv.

[19]  Xin Yu,et al.  MiR-7-5p functions as a tumor suppressor by targeting SOX18 in pancreatic ductal adenocarcinoma. , 2018, Biochemical and biophysical research communications.

[20]  R. Ersoy,et al.  Association between preoperative thyrotrophin and clinicopathological and aggressive features of papillary thyroid cancer , 2018, Endocrine.

[21]  Q. Ye,et al.  miR-30a-5p suppresses breast tumor growth and metastasis through inhibition of LDHA-mediated Warburg effect. , 2017, Cancer letters.

[22]  K. Soo,et al.  Distant metastasis as the sole initial manifestation of well-differentiated thyroid carcinoma , 2017, European Archives of Oto-Rhino-Laryngology.

[23]  J. Rho,et al.  The miR-24-3p/p130Cas: a novel axis regulating the migration and invasion of cancer cells , 2016, Scientific Reports.

[24]  Wei Li,et al.  CD73/NT5E is a target of miR-30a-5p and plays an important role in the pathogenesis of non-small cell lung cancer , 2017, Molecular Cancer.

[25]  Minoru Kanehisa,et al.  KEGG: new perspectives on genomes, pathways, diseases and drugs , 2016, Nucleic Acids Res..

[26]  The Gene Ontology Consortium.  Expansion of the Gene Ontology knowledgebase and resources , 2016, Nucleic Acids Res..

[27]  P. Dong,et al.  Knockdown of GGCT inhibits cell proliferation and induces late apoptosis in human gastric cancer , 2016, BMC Biochemistry.

[28]  Howard Y. Chang,et al.  Unique features of long non-coding RNA biogenesis and function , 2015, Nature Reviews Genetics.

[29]  Y. Zhang,et al.  Long non-coding RNA MEG3 suppresses migration and invasion of thyroid carcinoma by targeting of Rac1. , 2015, Neoplasma.

[30]  Lorenzo Farina,et al.  Computational analysis identifies a sponge interaction network between long non-coding RNAs and messenger RNAs in human breast cancer , 2014, BMC Systems Biology.

[31]  Charity W. Law,et al.  voom: precision weights unlock linear model analysis tools for RNA-seq read counts , 2014, Genome Biology.

[32]  G. Yousef,et al.  miR-192, miR-194 and miR-215: a convergent microRNA network suppressing tumor progression in renal cell carcinoma. , 2013, Carcinogenesis.

[33]  Victor M Montori,et al.  Thyroid cancer: zealous imaging has increased detection and treatment of low risk tumours , 2013, BMJ.

[34]  Debora S. Marks,et al.  miRcode: a map of putative microRNA target sites in the long non-coding transcriptome , 2012, Bioinform..

[35]  Guangchuang Yu,et al.  clusterProfiler: an R package for comparing biological themes among gene clusters. , 2012, Omics : a journal of integrative biology.

[36]  M. Esteller.  Non-coding RNAs in human disease , 2011, Nature Reviews Genetics.

[37]  P. Pandolfi,et al.  A ceRNA Hypothesis: The Rosetta Stone of a Hidden RNA Language? , 2011, Cell.

[38]  S. Remick,et al.  Anaplastic Thyroid Cancer: A Review of Epidemiology, Pathogenesis, and Treatment , 2011, Journal of oncology.

[39]  M. Goel,et al.  Understanding survival analysis: Kaplan-Meier estimate , 2010, International journal of Ayurveda research.

[40]  Gary D. Bader,et al.  The GeneMANIA prediction server: biological network integration for gene prioritization and predicting gene function , 2010, Nucleic Acids Res..

[41]  Mark D. Robinson,et al.  edgeR: a Bioconductor package for differential expression analysis of digital gene expression data , 2009, Bioinform..

[42]  M. Robinson,et al.  A scaling normalization method for differential expression analysis of RNA-seq data , 2010, Genome Biology.

[43]  Nathaniel Rothman,et al.  International patterns and trends in thyroid cancer incidence, 1973–2002 , 2009, Cancer Causes & Control.

[44]  A. Feinberg,et al.  The epigenetic progenitor origin of human cancer , 2006, Nature Reviews Genetics.

[45]  P. Shannon,et al.  Cytoscape: a software environment for integrated models of biomolecular interaction networks. , 2003, Genome research.

[46]  R. Gray.  Modeling Survival Data: Extending the Cox Model , 2002 .