A review on SNP and other types of molecular markers and their use in animal genetics

[1]  J. McEwan,et al.  Exclusion probabilities for pedigree testing farm animals , 1996, Theoretical and Applied Genetics.

[2]  Michael Krawczak,et al.  Cytosine methylation and the fate of CpG dinucleotides in vertebrate genomes , 1989, Human Genetics.

[3]  C. Chevalet,et al.  Measuring genetic distances between breeds: use of some distances in various short term evolution models , 2002, Genetics Selection Evolution.

[4]  G. Abecasis,et al.  Merlin—rapid analysis of dense genetic maps using sparse gene flow trees , 2002, Nature Genetics.

[5]  S. P. Fodor,et al.  Blocks of Limited Haplotype Diversity Revealed by High-Resolution Scanning of Human Chromosome 21 , 2001, Science.

[6]  P. Ajmone-Marsan,et al.  Assessing genetic diversity in Italian goat populations using AFLP markers. , 2001, Animal genetics.

[7]  Frank Dudbridge,et al.  Haplotype tagging for the identification of common disease genes , 2001, Nature Genetics.

[8]  Sinead B. O'Leary,et al.  Genetic variation in the 5q31 cytokine gene cluster confers susceptibility to Crohn disease , 2001, Nature Genetics.

[9]  A. Jeffreys,et al.  Intensely punctate meiotic recombination in the class II region of the major histocompatibility complex , 2001, Nature Genetics.

[10]  M. Daly,et al.  High-resolution haplotype structure in the human genome , 2001, Nature Genetics.

[11]  A Vignal,et al.  Empirical evaluation of genetic clustering methods using multilocus genotypes from 20 chicken breeds. , 2001, Genetics.

[12]  B. Letcher,et al.  Parentage and grandparentage assignment with known and unknown matings: application to Connecticut River Atlantic salmon restoration , 2001 .

[13]  A. Pingoud,et al.  Influence of fluorophor dye labels on the migration behavior of polymerase chain reaction – amplified short tandem repeats during denaturing capillary electrophoresis , 2001, Electrophoresis.

[14]  M. Beaumont,et al.  Estimation of admixture proportions: a likelihood-based approach using Markov chain Monte Carlo. , 2001, Genetics.

[15]  L. V. van Zutphen,et al.  Mapping of a QTL for serum HDL cholesterol in the rabbit using AFLP technology. , 2001, The Journal of heredity.

[16]  J. Dodgson,et al.  DNA cloning and sequence analysis of chicken AFLP. , 2001, Animal genetics.

[17]  T. H. E. Meuwissen,et al.  Marker based estimates of between and within population kinships for the conservation of genetic diversity , 2001 .

[18]  S. Hiendleder,et al.  An enhanced linkage map of the sheep genome comprising more than 1000 loci. , 2001, Genome research.

[19]  Sequence variability of a human pseudogene. , 2001, Genome research.

[20]  Pardis C Sabeti,et al.  Linkage disequilibrium in the human genome , 2001, Nature.

[21]  E. Boerwinkle,et al.  High‐throughput multiplex SNP genotyping with MALDI‐TOF mass spectrometry: Practice, problems and promise , 2001, Human mutation.

[22]  Pui-Yan Kwok,et al.  Single-nucleotide polymorphisms in the public domain: how useful are they? , 2001, Nature Genetics.

[23]  M. Daly,et al.  A map of human genome sequence variation containing 1.42 million single nucleotide polymorphisms , 2001, Nature.

[24]  S. Pääbo,et al.  Great ape DNA sequences reveal a reduced diversity and an expansion in humans , 2001, Nature Genetics.

[25]  N. Schork,et al.  Genetic analysis of case/control data using estimated haplotype frequencies: application to APOE locus variation and Alzheimer's disease. , 2001, Genome research.

[26]  M. P. Heaton,et al.  Estimation of DNA sequence diversity in bovine cytokine genes , 2001, Mammalian Genome.

[27]  L. Shi,et al.  Expressed sequence tags for the chicken genome from a normalized 10-day-old White Leghorn whole embryo cDNA library: 1. DNA sequence characterization and linkage analysis. , 2001, The Journal of heredity.

[28]  M. Ronaghi.  Pyrosequencing sheds light on DNA sequencing. , 2001, Genome research.

[29]  M. Schartl,et al.  First report on chicken genes and chromosomes 2000 , 2000, Cytogenetic and Genome Research.

[30]  S. Adalsteinsson,et al.  Genetic diversity and population structure of 20 North European cattle breeds. , 2000, The Journal of heredity.

[31]  K. Lindblad-Toh,et al.  SBE-TAGS: an array-based method for efficient single-nucleotide polymorphism genotyping. , 2000, Proceedings of the National Academy of Sciences of the United States of America.

[32]  Eric S. Lander,et al.  An SNP map of the human genome generated by reduced representation shotgun sequencing , 2000, Nature.

[33]  Jon A Yamato,et al.  Usefulness of single nucleotide polymorphism data for estimating population parameters. , 2000, Genetics.

[34]  Bernard Bibé,et al.  Traçabilité individuelle des viandes bovines à l’aide de marqueurs génétiques , 2000 .

[35]  J. Meriaux,et al.  Utilisation de marqueurs genetiques en selection : les activites de LABOGENA , 2000 .

[36]  L. Peltonen,et al.  A system for specific, high-throughput genotyping by allele-specific primer extension on microarrays. , 2000, Genome research.

[37]  J. Mickelson,et al.  First comprehensive low-density horse linkage map based on two 3-generation, full-sibling, cross-bred horse reference families. , 2000, Genomics.

[38]  M. Hessner,et al.  A multi-site study for detection of the factor V (Leiden) mutation from genomic DNA using a homogeneous invader microtiter plate fluorescence resonance energy transfer (FRET) assay. , 2000, The Journal of molecular diagnostics : JMD.

[39]  Eric S. Lander,et al.  Large-scale discovery and genotyping of single-nucleotide polymorphisms in the mouse , 2000, Nature Genetics.

[40]  M. Groenen,et al.  Estimation of SNP frequencies in European chicken populations , 2000 .

[41]  Hans H. Cheng,et al.  A consensus linkage map of the chicken genome. , 2000, Genome research.

[42]  B. Konfortov,et al.  Re-sequencing of DNA from a diverse panel of cattle reveals a high level of polymorphism in both intron and exon , 1999, Mammalian Genome.

[43]  G Luikart,et al.  New methods employing multilocus genotypes to select or exclude populations as origins of individuals. , 1999, Genetics.

[44]  Gabor T. Marth,et al.  A general approach to single-nucleotide polymorphism discovery , 1999, Nature Genetics.

[45]  Sovan Lek,et al.  Microsatellites and artificial neural networks: tools for the discrimination between natural and hatchery brown trout (Salmo trutta, L.) in Atlantic populations , 1999 .

[46]  Bruce P. Neri,et al.  Polymorphism identification and quantitative detection of genomic DNA by invasive cleavage of oligonucleotide probes , 1999, Nature Biotechnology.

[47]  T. Ideker,et al.  Mining SNPs from EST databases. , 1999, Genome research.

[48]  Francis S. Collins,et al.  Erratum: A DNA polymorphism discovery resource for research on human genetic variation (Genome Research (1998) 8 (1229-1231)) , 1999 .

[49]  L. Brooks,et al.  A DNA polymorphism discovery resource for research on human genetic variation. , 1998, Genome research.

[50]  R. Durrett,et al.  Equilibrium distributions of microsatellite repeat length resulting from a balance between slippage events and point mutations. , 1998, Proceedings of the National Academy of Sciences of the United States of America.

[51]  C. Nusbaum,et al.  Large-scale identification, mapping, and genotyping of single-nucleotide polymorphisms in the human genome. , 1998, Science.

[52]  T. C. Marshall,et al.  Statistical confidence for likelihood‐based paternity inference in natural populations , 1998, Molecular ecology.

[53]  S N Thibodeau,et al.  Denaturing high performance liquid chromatography (DHPLC) used in the detection of germline and somatic mutations. , 1998, Nucleic acids research.

[54]  P. Green,et al.  Base-calling of automated sequencer traces using phred. I. Accuracy assessment. , 1998, Genome research.

[55]  P Green,et al.  Base-calling of automated sequencer traces using phred. II. Error probabilities. , 1998, Genome research.

[56]  R M Idury,et al.  A simple method for automated allele binning in microsatellite markers. , 1997, Genome research.

[57]  C. Chevalet,et al.  Error tolerant parent identification from a finite set of individuals , 1997 .

[58]  D. Nickerson,et al.  PolyPhred: automating the detection and genotyping of single nucleotide substitutions using fluorescence-based resequencing. , 1997, Nucleic acids research.

[59]  L Peltonen,et al.  Minisequencing: a specific tool for DNA analysis and diagnostics on oligonucleotide arrays. , 1997, Genome research.

[60]  H. Ellegren,et al.  Low frequency of microsatellites in the avian genome. , 1997, Genome research.

[61]  J. Keele,et al.  A second-generation linkage map of the bovine genome. , 1997, Genome research.

[62]  S Lek,et al.  Classifying individuals among infra-specific taxa using microsatellite data and neural networks. , 1996, Comptes rendus de l'Academie des sciences. Serie III, Sciences de la vie.

[63]  S. P. Fodor,et al.  Detection of heterozygous mutations in BRCA1 using high density oligonucleotide arrays and two–colour fluorescence analysis , 1996, Nature Genetics.

[64]  D. Nickerson,et al.  Single-well genotyping of diallelic sequence variations by a two-color ELISA-based oligonucleotide ligation assay. , 1996, Nucleic acids research.

[65]  Daniel Vaiman,et al.  A genetic linkage map of the male goat genome. , 1996, Genetics.

[66]  M. Blouin,et al.  Use of microsatellite loci to classify individuals by relatedness , 1996, Molecular ecology.

[67]  J. Carpten,et al.  Modulation of non-templated nucleotide addition by Taq DNA polymerase: primer modifications that facilitate genotyping. , 1996, BioTechniques.

[68]  L. Alexander,et al.  A comprehensive map of the porcine genome. , 1996, Genome research.

[69]  Cécile Fizames,et al.  A comprehensive genetic map of the human genome based on 5,264 microsatellites , 1996, Nature.

[70]  G. Gyapay,et al.  Correction of some genotyping errors in automated fluorescent microsatellite analysis by enzymatic removal of one base overhangs. , 1996, Nucleic acids research.

[71]  E. Winn-Deen,et al.  High-density multiplex detection of nucleic acid sequences: oligonucleotide ligation assay and sequence-coded separation. , 1994, Nucleic acids research.

[72]  K H Buetow,et al.  A comprehensive human linkage map with centimorgan density. Cooperative Human Linkage Center (CHLC). , 1994, Science.

[73]  S. P. Fodor,et al.  Light-generated oligonucleotide arrays for rapid DNA sequence analysis. , 1994, Proceedings of the National Academy of Sciences of the United States of America.

[74]  T H Jukes,et al.  Rates of transition and transversion in coding sequences since the human-rodent divergence. , 1994, Genomics.

[75]  C. R. Connell,et al.  Allelic discrimination by nick-translation PCR with fluorogenic probes. , 1993, Nucleic acids research.

[76]  D. Tautz,et al.  Social structure of pilot whales revealed by analytical DNA profiling. , 1993, Science.

[77]  G. Gyapay,et al.  A second-generation linkage map of the human genome , 1992, Nature.

[78]  J. Weber,et al.  Abundant class of human DNA polymorphisms which can be typed using the polymerase chain reaction. , 1989, American journal of human genetics.

[79]  M. Litt,et al.  A hypervariable microsatellite revealed by in vitro amplification of a dinucleotide repeat within the cardiac muscle actin gene. , 1989, American journal of human genetics.

[80]  M. Daly,et al.  A genetic linkage map of the human genome , 1987, Cell.

[81]  M. Nei,et al.  Pseudogenes as a paradigm of neutral evolution , 1981, Nature.