Plant defence model revisions through iterative minimisation of constraint violations
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Matjaz Depolli | Nada Lavrac | Kristina Gruden | Dragana Miljkovic | Igor Mozetic | Marko Petek | Tjasa Stare | K. Gruden | M. Petek | D. Miljković | Tjaša Stare | M. Depolli | I. Mozetič | N. Lavrač
[1] Kenneth Levenberg. A METHOD FOR THE SOLUTION OF CERTAIN NON – LINEAR PROBLEMS IN LEAST SQUARES , 1944 .
[2] Wolfgang Reisig,et al. Petri Nets and Algebraic Specifications , 1991, Theor. Comput. Sci..
[3] Manuel Silva Suárez,et al. On fluidification of Petri Nets: from discrete to hybrid and continuous models , 2003, Annu. Rev. Control..
[4] D. Klessig,et al. Salicylic Acid, a multifaceted hormone to combat disease. , 2009, Annual review of phytopathology.
[5] Gary J Loake,et al. Transcription Dynamics in Plant Immunity , 2011, Plant Cell.
[6] Paul T. Boggs,et al. Sequential Quadratic Programming , 1995, Acta Numerica.
[7] 中尾 光輝,et al. KEGG(Kyoto Encyclopedia of Genes and Genomes)〔和文〕 (特集 ゲノム医学の現在と未来--基礎と臨床) -- (データベース) , 2000 .
[8] Manuel Silva,et al. On Fluidification of Petri Nets: From Discrete to Hybrid and Continuous Models , 2003, ADHS.
[9] S. Clarke,et al. Salicylic acid dependent signaling promotes basal thermotolerance but is not essential for acquired thermotolerance in Arabidopsis thaliana. , 2004, The Plant journal : for cell and molecular biology.
[10] J. Metraux,et al. Numeric simulation of plant signaling networks. , 2001, Plant physiology.
[11] Leslie Friedrich,et al. Biological induction of systemic acquired resistance in Arabidopsis , 1993 .
[12] Tanya Z. Berardini,et al. The Arabidopsis Information Resource (TAIR): gene structure and function annotation , 2007, Nucleic Acids Res..
[13] Jennifer Funk,et al. NONEXPRESSOR OF PATHOGENESIS-RELATED PROTEINS1 (NPR1) and some NPR1-related proteins are sensitive to salicylic acid. , 2011, Molecular plant pathology.
[14] Hartmut Foerster,et al. AraCyc: Overview of an Arabidopsis Metabolism Database and its Applications for Plant Research , 2006 .
[15] P. Reymond,et al. Jasmonate and salicylate as global signals for defense gene expression. , 1998, Current opinion in plant biology.
[16] Nada Lavrač,et al. Signalling Network Construction for Modelling Plant Defence Response , 2012, PloS one.
[17] Hongwei Guo,et al. ETHYLENE-INSENSITIVE5 encodes a 5′→3′ exoribonuclease required for regulation of the EIN3-targeting F-box proteins EBF1/2 , 2006, Proceedings of the National Academy of Sciences.
[18] O Wolkenhauer,et al. Analysis and modelling of signal transduction pathways in systems biology. , 2003, Biochemical Society transactions.
[19] E. Klipp,et al. Mathematical modeling of intracellular signaling pathways , 2006, BMC Neuroscience.
[20] Mathew G. Lewsey,et al. Signaling in induced resistance. , 2010, Advances in virus research.
[21] Kevin A Janes,et al. A biological approach to computational models of proteomic networks. , 2006, Current opinion in chemical biology.
[22] D. Marquardt. An Algorithm for Least-Squares Estimation of Nonlinear Parameters , 1963 .
[23] Maja Ravnikar,et al. Dynamics of Responses in Compatible Potato - Potato virus Y Interaction Are Modulated by Salicylic Acid , 2011, PloS one.
[24] Masao Nagasaki,et al. Genomic Object Net: I. A platform for modelling and simulating biopathways. , 2003, Applied bioinformatics.
[25] Eric Walter,et al. Identification of Parametric Models: from Experimental Data , 1997 .
[26] Pradeep Kachroo,et al. New insights into resistance protein-mediated signaling against turnip crinkle virus in Arabidopsis , 2012, Journal of Plant Biochemistry and Biotechnology.
[27] Jyoti Shah,et al. The salicylic acid loop in plant defense. , 2003, Current opinion in plant biology.
[28] C. D. Gelatt,et al. Optimization by Simulated Annealing , 1983, Science.
[29] D. Klessig,et al. The salicylic acid signal in plants , 1994, Plant Molecular Biology.
[30] Dorothea Heiss-Czedik,et al. An Introduction to Genetic Algorithms. , 1997, Artificial Life.
[31] Rainer Storn,et al. Differential Evolution – A Simple and Efficient Heuristic for global Optimization over Continuous Spaces , 1997, J. Glob. Optim..
[32] A. E. Eiben,et al. Introduction to Evolutionary Computing , 2003, Natural Computing Series.
[33] A. Valencia,et al. A gene network for navigating the literature , 2004, Nature Genetics.
[34] Zheng Qing Fu,et al. NPR3 and NPR4 are receptors for the immune signal salicylic acid in plants , 2012, Nature.
[35] R Hofestädt,et al. Quantitative modeling of biochemical networks , 1998, Silico Biol..
[36] Pradeep Kachroo,et al. Signaling requirements and role of salicylic acid in HRT- and rrt-mediated resistance to turnip crinkle virus in Arabidopsis. , 2004, The Plant journal : for cell and molecular biology.
[37] Bogdan Filipič,et al. Parallel Evolutionary Computation Framework for Single- and Multiobjective Optimization , 2009 .
[38] H. Kestler,et al. Network modeling of signal transduction: establishing the global view , 2008, BioEssays : news and reviews in molecular, cellular and developmental biology.
[39] E. Coddington,et al. Theory of Ordinary Differential Equations , 1955 .
[40] Jaime G. Carbonell,et al. Virus interactions with human signal transduction pathways , 2011, Int. J. Comput. Biol. Drug Des..
[41] Atsushi Doi,et al. Biopathways representation and simulation on hybrid functional Petri net , 2003, Silico Biol..
[42] Eran Pichersky,et al. An Aldehyde Oxidase in Developing Seeds of Arabidopsis Converts Benzaldehyde to Benzoic Acid1[OA] , 2009, Plant Physiology.
[43] P. Staswick. JAZing up jasmonate signaling. , 2008, Trends in plant science.