DoBISCUIT: a database of secondary metabolite biosynthetic gene clusters
暂无分享,去创建一个
Nobuyuki Fujita | Natsuko Ichikawa | Machi Sasagawa | Mika Yamamoto | Hisayuki Komaki | Yumi Yoshida | Shuji Yamazaki | H. Komaki | Natsuko Ichikawa | Machi Sasagawa | N. Fujita | Yumi Yoshida | S. Yamazaki | M. Yamamoto
[1] David J Newman,et al. Natural products as sources of new drugs over the 30 years from 1981 to 2010. , 2012, Journal of natural products.
[2] Genome Sequences of Three Tunicamycin-Producing Streptomyces Strains, S. chartreusis NRRL 12338, S. chartreusis NRRL 3882, and S. lysosuperificus ATCC 31396 , 2011, Journal of bacteriology.
[3] H. Ikeda,et al. Production of ‘hybrid’ antibiotics by genetic engineering , 1985, Nature.
[4] T. Woyke,et al. Draft Genome Sequence of Streptomyces sp. Strain Wigar10, Isolated from a Surface-Sterilized Garlic Bulb , 2011, Journal of bacteriology.
[5] Robert D. Finn,et al. InterPro: the integrative protein signature database , 2008, Nucleic Acids Res..
[6] K. Shin‐ya,et al. Discovery of a pimaricin analog JBIR-13, from Streptomyces bicolor NBRC 12746 as predicted by sequence analysis of type I polyketide synthase gene , 2009, Applied Microbiology and Biotechnology.
[7] Kai Blin,et al. antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences , 2011, Nucleic Acids Res..
[8] Yeo Joon Yoon,et al. Biosynthesis of rapamycin and its regulation: past achievements and recent progress , 2010, The Journal of Antibiotics.
[9] S. Horinouchi,et al. Combinatorial biosynthesis of plant medicinal polyketides by microorganisms. , 2009, Current opinion in chemical biology.
[10] I-Min A. Chen,et al. The Genomes On Line Database (GOLD) in 2007: status of genomic and metagenomic projects and their associated metadata , 2007, Nucleic Acids Res..
[11] L. Katz,et al. Identification and characterization of the niddamycin polyketide synthase genes from Streptomyces caelestis , 1997, Journal of bacteriology.
[12] J. Staunton,et al. Active-site residue, domain and module swaps in modular polyketide synthases , 2003, Journal of Industrial Microbiology and Biotechnology.
[13] I. Kozone,et al. Streptomyces associated with a marine sponge Haliclona sp.; biosynthetic genes for secondary metabolites and products. , 2011, Environmental microbiology.
[14] Chaitan Khosla,et al. Revisiting the modularity of modular polyketide synthases. , 2009, Current opinion in chemical biology.
[15] P. Leadlay,et al. An unusually large multifunctional polypeptide in the erythromycin-producing polyketide synthase of Saccharopolyspora erythraea , 1990, Nature.
[16] I-Min A. Chen,et al. The Genomes OnLine Database (GOLD) v.4: status of genomic and metagenomic projects and their associated metadata , 2011, Nucleic Acids Res..
[17] Hideaki Oikawa,et al. Robust platform for de novo production of heterologous polyketides and nonribosomal peptides in Escherichia coli. , 2007, Organic & biomolecular chemistry.
[18] David L. Wheeler,et al. GenBank , 2015, Nucleic Acids Res..
[19] T. Stachelhaus,et al. The specificity-conferring code of adenylation domains in nonribosomal peptide synthetases. , 1999, Chemistry & biology.
[20] J. Zucko,et al. ClustScan: an integrated program package for the semi-automatic annotation of modular biosynthetic gene clusters and in silico prediction of novel chemical structures , 2008, Nucleic acids research.
[21] G. Hong,et al. Nucleic Acids Research , 2015, Nucleic Acids Research.
[22] S. Qin,et al. Draft Genome Sequence of Marine Streptomyces sp. Strain W007, Which Produces Angucyclinone Antibiotics with a Benz[a]anthracene Skeleton , 2012, Journal of bacteriology.
[23] Ioannis Xenarios,et al. T-Coffee: a web server for the multiple sequence alignment of protein and RNA sequences using structural information and homology extension , 2011, Nucleic Acids Res..
[24] E. Myers,et al. Basic local alignment search tool. , 1990, Journal of molecular biology.
[25] Alcino J. Silva,et al. Multiple genetic modifications of the erythromycin polyketide synthase to produce a library of novel ‘ ‘ unnatural ’ ’ natural products , 1999 .
[26] J B McAlpine,et al. Modular organization of genes required for complex polyketide biosynthesis. , 1991, Science.
[27] Takashi Gojobori,et al. The DNA Data Bank of Japan launches a new resource, the DDBJ Omics Archive of functional genomics experiments , 2011, Nucleic Acids Res..
[28] J. Silberg,et al. A transposase strategy for creating libraries of circularly permuted proteins , 2012, Nucleic acids research.
[29] C R Hutchinson,et al. Sequencing and mutagenesis of genes from the erythromycin biosynthetic gene cluster of Saccharopolyspora erythraea that are involved in L-mycarose and D-desosamine production. , 1997, Microbiology.
[30] Gitanjali Yadav,et al. SBSPKS: structure based sequence analysis of polyketide synthases , 2010, Nucleic Acids Res..
[31] Thomas L. Madden,et al. BLAST 2 Sequences, a new tool for comparing protein and nucleotide sequences. , 1999, FEMS microbiology letters.
[32] B. Pfeifer,et al. Complete biosynthesis of erythromycin A and designed analogs using E. coli as a heterologous host. , 2010, Chemistry & biology.
[33] Gwan-Su Yi,et al. PKMiner: a database for exploring type II polyketide synthases , 2012, BMC Microbiology.
[34] Satoshi Omura,et al. Genome-minimized Streptomyces host for the heterologous expression of secondary metabolism , 2010, Proceedings of the National Academy of Sciences.
[35] Thomas Börner,et al. Natural Biocombinatorics in the Polyketide Synthase Genes of the Actinobacterium Streptomyces avermitilis , 2006, PLoS Comput. Biol..
[36] The UniProt Consortium,et al. Reorganizing the protein space at the Universal Protein Resource (UniProt) , 2011, Nucleic Acids Res..