Prediction of Methyl Radical Addition Rate Constants from Molecular Structure

Multiple linear regression and computational neural networks (CNNs) are used to develop quantitative structure−property relationships for methyl radical addition rate constants. Structure based descriptors are used to numerically encode substrate information for 191 compounds. Descriptors can be classified as topological, geometric, electronic, or combination. A six-descriptor CNN was developed that produced training set rms error = 0.381 log units and rms error = 0.496 log units for an external prediction set. A seven-descriptor CNN was used to build a model for a subset of 172 of the compounds. Training set rms error was 0.424 log units and prediction set rms error reduced to 0.409 log units. Model predictions were on the order of experimental error.

[1]  M. Matsuda,et al.  A new dual-parameter for reactivities of vinyl monomers toward free-radicals , 1990 .

[2]  R. L. Motard Rapporteurs' reviewProcess synthesis , 1979 .

[3]  M. Szwarc,et al.  Methyl Affinities of Aromatic Compounds , 1954 .

[4]  Kenneth J. Miller,et al.  A NEW EMPIRICAL METHOD TO CALCULATE AVERAGE MOLECULAR POLARIZABILITIES , 1980 .

[5]  H. Wiener Structural determination of paraffin boiling points. , 1947, Journal of the American Chemical Society.

[6]  H. Fischer,et al.  Absolute Rate Constants for the Addition of Methyl Radicals to Alkenes in Solution: New Evidence for Polar Interactions , 1996 .

[7]  L. Kier Shape Indexes of Orders One and Three from Molecular Graphs , 1986 .

[8]  M. Szwarc,et al.  The Secondary Deuterium Effect in CH3and CF3Addition Reactions , 1962 .

[9]  A. Bondi van der Waals Volumes and Radii , 1964 .

[10]  L. Kier Distinguishing Atom Differences in a Molecular Graph Shape Index , 1986 .

[11]  M. Szwarc,et al.  Pyrolysis of Acetone and the Heat of Formation of Acetyl Radicals , 1955 .

[12]  C. Bamford,et al.  Patterns of free radical reactivity , 1959 .

[13]  Peter C. Jurs,et al.  Atomic charge calculations for quantitative structure—property relationships , 1992 .

[14]  M. Szwarc,et al.  Reactions of Methyl Radicals with Substrates Acting as Hydrogen Donors and as Methyl Radical Acceptors , 1956 .

[15]  Aleksandar Sabljic,et al.  Comparative QSAR study on hydroxyl radical reactivity with unsaturated hydrocarbons: PLS versus MLR , 1996 .

[16]  Milan Randic,et al.  Search for all self-avoiding paths graphs for molecular graphs , 1979, Comput. Chem..

[17]  J. Chien Raman spectra of aqueous solutions of potassium thiocyanate. , 1947, Journal of the American Chemical Society.

[18]  M. Szwarc,et al.  Addition of methyl radicals to isolated, conjugated and cumulated dienes , 1959, Proceedings of the Royal Society of London. Series A. Mathematical and Physical Sciences.

[19]  Brian T. Luke,et al.  Evolutionary Programming Applied to the Development of Quantitative Structure-Activity Relationships and Quantitative Structure-Property Relationships , 1994, J. Chem. Inf. Comput. Sci..

[20]  J. Gresser,et al.  Methyl Affinities of Some Cyclic Olefins and Polyenes , 1961 .

[21]  H. Fischer,et al.  ABSOLUTE RATE CONSTANTS AND ARRHENIUS PARAMETERS FOR THE ADDITION OF THE METHYL RADICAL TO UNSATURATED COMPOUNDS : THE METHYL AFFINITIES REVISITED , 1997 .

[22]  M. Szwarc,et al.  The addition of methyl radicals to ethylene, propylene, the butenes and higher 1-olefines , 1957, Proceedings of the Royal Society of London. Series A, Mathematical and physical sciences.

[23]  Terry R. Stouch,et al.  A simple method for the representation, quantification, and comparison of the volumes and shapes of chemical compounds , 1986, J. Chem. Inf. Comput. Sci..

[24]  C. Steel,et al.  Methyl Affinities Determined by Photolysis of Azomethane , 1960 .

[25]  P. Jurs,et al.  Development and use of charged partial surface area structural descriptors in computer-assisted quantitative structure-property relationship studies , 1990 .

[26]  James J. P. Stewart,et al.  MOPAC: A semiempirical molecular orbital program , 1990, J. Comput. Aided Mol. Des..

[27]  Matthew D. Wessel,et al.  Prediction of Reduced Ion Mobility Constants from Structural Information Using Multiple Linear Regression Analysis and Computational Neural Networks , 1994 .

[28]  M. Szwarc,et al.  Reactivities of Aromatic Hydrocarbons toward Methyl Radicals , 1955 .

[29]  L. Radom,et al.  Addition of Methyl Radical to Substituted Alkenes: A Theoretical Study of the Reaction Mechanism , 1993 .

[30]  S. Bauer,et al.  An Electron Diffraction Study of Ketene Dimer, Methylketene Dimer and β-Propiolactone1 , 1955 .

[31]  S. C. Rogers,et al.  Ab initio molecular orbital calculations on the Q-e scheme for predicting reactivity in free-radical copolymerization , 1994 .

[32]  J. Hunt,et al.  Photochemical Exchange of Water between Cr(H2O)6+3 and Solvent1 , 1957 .

[33]  Andreas Klamt,et al.  Estimation of gas-phase hydroxyl radical rate constants of organic compounds from molecular orbital calculations , 1993 .

[34]  R. Porter,et al.  Some Chemical Reactions of Trifluoromethyl Hypofluorite1 , 1957 .

[35]  N. Colthup Molecular orbital study of the Q-e scheme in free radical copolymerization , 1982 .

[36]  R. Atkinson A structure-activity relationship for the estimation of rate constants for the gas-phase reactions of OH radicals with organic compounds , 1987 .

[37]  M. Szwarc,et al.  Methyl Affinities of Substituted Styrenes, their Homologs and Analogs , 1959 .

[38]  M. Szwarc Singlet‐Triplet Excitation Energy of Aromatic Compounds and Their Reactivities , 1955 .

[39]  A. Rembaum,et al.  694. Addition of methyl radicals to quinones. Part II. The reaction centre , 1958 .

[40]  T. Fueno,et al.  Ab initio SCF study of the addition of the methyl radical to vinyl compounds , 1988 .

[41]  L. Herk,et al.  Methyl Affinities of Some Compounds Related to Acrylates and Acrylonitriles. Reactivities of Conjugated Systems Involving Atoms Other Than Carbon , 1961 .

[42]  F. W. Lampe,et al.  GAS PHASE IONIC REACTIONS. METHANE AND ETHYLENE , 1956 .

[43]  James B. Bouck,et al.  Hydrogen Bonding of Phosphoryl Compounds with Chloroform and Other Solvents. II , 1955 .

[44]  H. Reiss,et al.  Nonterminated chain polymerization in a convectionless gas , 1988 .

[45]  Charles C. Price,et al.  Relative reactivities in vinyl copolymerization , 1947 .

[46]  A. D. Osborne,et al.  Structure and Reactivity in the Radiolysis of Ketones , 1961 .

[47]  M. Szwarc,et al.  Addition of Methyl Radical to cis and trans Isomers , 1957 .

[48]  F. T. McClure,et al.  Combustion Instability: Acoustic Interaction with a Burning Propellant Surface , 1959 .

[49]  M. Szwarc Reactions of methyl radicals and their applications to polymer chemistry , 1955 .

[50]  M. Szwarc,et al.  Methyl Affinities of Vinyl Monomers. Part I. Styrene and Phenylated Ethylenes , 1955 .

[51]  Peter C. Jurs,et al.  Automated Descriptor Selection for Quantitative Structure-Activity Relationships Using Generalized Simulated Annealing , 1995, J. Chem. Inf. Comput. Sci..

[52]  A. Rembaum,et al.  223. Addition of methyl radicals to substituted benzenes , 1957 .

[53]  A. V. Willi Kinetics and mechanism of the decarboxylation of salicylic acids , 1959 .

[54]  M. Szwarc,et al.  Effect of Conjugation, Hyperconjugation, and Steric Hindrance on Methyl Affinities , 1959 .

[55]  T. J. Lane,et al.  A Study of Thiourea and Substituted Thiourea Analogs by the Bjerrum Titration Method , 1956 .

[56]  A. K. Madan,et al.  Superpendentic Index: A Novel Topological Descriptor for Predicting Biological Activity , 1999, J. Chem. Inf. Comput. Sci..

[57]  B. Giese Formation of CC Bonds by Addition of Free Radicals to Alkenes , 1983 .

[58]  A. Rembaum,et al.  Methyl Affinities of Quinones , 1955 .

[59]  Jon W. Ball,et al.  Quantitative structure‐activity relationships for toxicity of phenols using regression analysis and computational neural networks , 1994 .

[60]  M. Szwarc,et al.  Addition of Methyl Radicals to Acetylenic Compounds , 1957 .

[61]  L. Barrie,et al.  Assessment of uncertainties in the projected concentrations of methane in the atmosphere (Technical Report) , 1994 .

[62]  R. J. Abraham,et al.  Charge calculations in molecular mechanics IV: A general method for conjugated systems , 1988 .