An extended Cellular Potts Model analyzing a wound healing assay
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[1] J. Paul Robinson,et al. Tensile mechanical properties of three-dimensional type I collagen extracellular matrices with varied microstructure. , 2002, Journal of biomechanical engineering.
[2] Martin Bastmeyer,et al. Cell behaviour on micropatterned substrata: limits of extracellular matrix geometry for spreading and adhesion , 2004, Journal of Cell Science.
[3] F. Malavasi,et al. The human CD38 gene: polymorphism, CpG island, and linkage to the CD157 (BST-1) gene , 1999, Immunogenetics.
[4] J. Parsons,et al. Cell Migration--Movin' On , 1999, Science.
[5] Kenneth M. Yamada,et al. One-dimensional topography underlies three-dimensional fibrillar cell migration , 2009, The Journal of cell biology.
[6] D. Lauffenburger,et al. Migration of tumor cells in 3D matrices is governed by matrix stiffness along with cell-matrix adhesion and proteolysis. , 2006, Proceedings of the National Academy of Sciences of the United States of America.
[7] S. Carter,et al. Haptotaxis and the Mechanism of Cell Motility , 1967, Nature.
[8] Kerry A Landman,et al. Multi-scale modeling of a wound-healing cell migration assay. , 2007, Journal of theoretical biology.
[9] T. Hirano,et al. BST-1/CD157 regulates the humoral immune responses in vivo. , 2000, Chemical immunology.
[10] Leonard M. Sander,et al. The Role of Cell-Cell Adhesion in Wound Healing , 2006, q-bio/0610015.
[11] M. Spector,et al. Optimal Degradation Rate for Collagen Chambers Used for Regeneration of Peripheral Nerves over Long Gaps , 2004, Cells Tissues Organs.
[12] Y. Satoh,et al. Effects of ATP and its analogues on [Ca2+]i dynamics in the rabbit corneal epithelium. , 1999, Archives of histology and cytology.
[13] I. Kasman,et al. EGFL7 regulates the collective migration of endothelial cells by restricting their spatial distribution , 2007, Development.
[14] Frederick Grinnell,et al. Cell motility and mechanics in three-dimensional collagen matrices. , 2010, Annual review of cell and developmental biology.
[15] E Medico,et al. Met overexpression confers HGF‐dependent invasive phenotype to human thyroid carcinoma cells in vitro , 1999, Journal of cellular physiology.
[16] E. Sahai,et al. Rac Activation and Inactivation Control Plasticity of Tumor Cell Movement , 2008, Cell.
[17] M. Abercrombie,et al. The Croonian Lecture, 1978 - The crawling movement of metazoan cells , 1980, Proceedings of the Royal Society of London. Series B. Biological Sciences.
[18] N. Metropolis,et al. Equation of State Calculations by Fast Computing Machines , 1953, Resonance.
[19] J A Sherratt,et al. Modeling the effects of transforming growth factor‐β on extracellular matrix alignment in dermal wound repair , 2001, Wound repair and regeneration : official publication of the Wound Healing Society [and] the European Tissue Repair Society.
[20] E Medico,et al. Expression of the Met/HGF receptor in normal and neoplastic human tissues. , 1991, Oncogene.
[21] Gerhard Christofori,et al. Cell adhesion and signalling by cadherins and Ig-CAMs in cancer , 2004, Nature Reviews Cancer.
[22] J A Sherratt,et al. Mathematical modeling of corneal epithelial wound healing. , 1994, Mathematical biosciences.
[23] L. Preziosi,et al. A Cellular Potts Model simulating cell migration on and in matrix environments. , 2012, Mathematical biosciences and engineering : MBE.
[24] A. Weeds,et al. Calcium and the cytoskeleton. , 1986, British medical bulletin.
[25] Nan Chen,et al. A Parallel Implementation of the Cellular Potts Model for Simulation of Cell-Based Morphogenesis , 2006, ACRI.
[26] Benjamin Geiger,et al. Cell spreading and focal adhesion dynamics are regulated by spacing of integrin ligands. , 2007, Biophysical journal.
[27] Philip K Maini,et al. Traveling wave model to interpret a wound-healing cell migration assay for human peritoneal mesothelial cells. , 2004, Tissue engineering.
[28] G. Gerlitz,et al. The role of chromatin structure in cell migration. , 2011, Trends in cell biology.
[29] Edward Y Lee,et al. Synthesis and characterization of a model extracellular matrix that induces partial regeneration of adult mammalian skin. , 1989, Proceedings of the National Academy of Sciences of the United States of America.
[30] W. Fiers,et al. Genetic manipulation of E-cadherin expression by epithelial tumor cells reveals an invasion suppressor role , 1991, Cell.
[31] Olga Ilina,et al. Mechanisms of collective cell migration at a glance , 2009, Journal of Cell Science.
[32] Rizwan U. Farooqui,et al. Multiple rows of cells behind an epithelial wound edge extend cryptic lamellipodia to collectively drive cell-sheet movement , 2005, Journal of Cell Science.
[33] Yi Jiang,et al. A cell-based model exhibiting branching and anastomosis during tumor-induced angiogenesis. , 2007, Biophysical journal.
[34] R T Tranquillo,et al. Neuronal contact guidance in magnetically aligned fibrin gels: effect of variation in gel mechano-structural properties. , 2001, Biomaterials.
[35] Roeland M. H. Merks,et al. Contact-inhibited chemotactic motility: Role in de novo and sprouting blood vessel growth , 2005 .
[36] Robert D. Goldman,et al. Actin, microtubules, and vimentin intermediate filaments cooperate for elongation of invadopodia , 2010, The Journal of cell biology.
[37] L. Luzzatto,et al. CD157 is an important mediator of neutrophil adhesion and migration. , 2004, Blood.
[38] Glazier,et al. Simulation of biological cell sorting using a two-dimensional extended Potts model. , 1992, Physical review letters.
[39] D. Lauffenburger,et al. Receptors: Models for Binding, Trafficking, and Signaling , 1993 .
[40] Jianping Fu,et al. Forcing stem cells to behave: a biophysical perspective of the cellular microenvironment. , 2012, Annual review of biophysics.
[41] Stephen J. Weiss,et al. Protease-dependent versus -independent cancer cell invasion programs: three-dimensional amoeboid movement revisited , 2009, The Journal of cell biology.
[42] T. Krieg,et al. Inflammation in wound repair: molecular and cellular mechanisms. , 2007, The Journal of investigative dermatology.
[43] Luigi Preziosi,et al. Individual Cell-Based Model for In-Vitro Mesothelial Invasion of Ovarian Cancer , 2010 .
[44] James A. Glazier,et al. Magnetization to Morphogenesis: A Brief History of the Glazier-Graner-Hogeweg Model , 2007 .
[45] J Vandekerckhove,et al. Scatter factor: molecular characteristics and effect on the invasiveness of epithelial cells , 1990, The Journal of cell biology.
[46] J. Jansen,et al. The influence of nanoscale topographical cues on initial osteoblast morphology and migration. , 2010, European cells & materials.
[47] J M Zahm,et al. Cell migration and proliferation during the in vitro wound repair of the respiratory epithelium. , 1997, Cell motility and the cytoskeleton.
[48] Stanislav Y Shvartsman,et al. Role of boundary conditions in an experimental model of epithelial wound healing. , 2006, American journal of physiology. Cell physiology.
[49] Niels Galjart,et al. Differential effects of matrix and growth factors on endothelial and fibroblast motility: Application of a modified cell migration assay , 2006, Journal of cellular biochemistry.
[50] P. Forscher,et al. A novel cytoskeletal structure involved in purse string wound closure and cell polarity maintenance , 1993, The Journal of cell biology.
[51] A. Aman,et al. Wnt/beta-catenin and Fgf signaling control collective cell migration by restricting chemokine receptor expression. , 2008, Developmental cell.
[52] D. McElwain,et al. A mathematical model of wound healing and subsequent scarring , 2010, Journal of The Royal Society Interface.
[53] M. McGrath,et al. Wound Geometry and the Kinetics of Wound Contraction , 1983, Plastic and reconstructive surgery.
[54] E. Batschelet. Circular statistics in biology , 1981 .
[55] Richard B. Dickinson,et al. Biased cell migration of fibroblasts exhibiting contact guidance in oriented collagen gels , 1994, Annals of Biomedical Engineering.
[56] T. Chikama,et al. Cell–matrix and cell–cell interactions during corneal epithelial wound healing , 2003, Progress in Retinal and Eye Research.
[57] Nicholas S. Flann,et al. Discovering novel cancer therapies: A computational modeling and search approach , 2008, 2008 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology.
[58] P. Friedl,et al. Corrigendum to “Nuclear mechanics during cell migration” [Curr. Opin. Cell Biol. 23 (2011) 55–64] , 2011 .
[59] Dennis Discher,et al. Substrate compliance versus ligand density in cell on gel responses. , 2004, Biophysical journal.
[60] Richard B. Dickinson,et al. Quantitative Analysis of Adhesion-Mediated Cell Migration in Three-Dimensional Gels of RGD-Grafted Collagen , 2004, Annals of Biomedical Engineering.
[61] P. Friedl,et al. Tumour-cell invasion and migration: diversity and escape mechanisms , 2003, Nature Reviews Cancer.
[62] H. Sheardown,et al. Interactions of corneal epithelial cells and surfaces modified with cell adhesion peptide combinations , 2002, Journal of biomaterials science. Polymer edition.
[63] J A Sherratt,et al. Mathematical modelling of extracellular matrix dynamics using discrete cells: fiber orientation and tissue regeneration. , 1999, Journal of theoretical biology.
[64] L. Preziosi,et al. A multiscale hybrid approach for vasculogenesis and related potential blocking therapies. , 2011, Progress in Biophysics and Molecular Biology.
[65] R. B. Potts. Some generalized order-disorder transformations , 1952, Mathematical Proceedings of the Cambridge Philosophical Society.
[66] A S Hoffman,et al. Correlation between corneal epithelial cell outgrowth and monoclonal antibody binding to the cell binding domain of adsorbed fibronectin. , 1994, Journal of biomedical materials research.
[67] Erica D. Perryn,et al. Vascular sprout formation entails tissue deformations and VE-cadherin-dependent cell-autonomous motility. , 2008, Developmental biology.
[68] M. Dembo,et al. Cell movement is guided by the rigidity of the substrate. , 2000, Biophysical journal.
[69] Ronald N Germain,et al. Stromal cell networks regulate lymphocyte entry, migration, and territoriality in lymph nodes. , 2006, Immunity.
[70] S. Goodman,et al. The E8 subfragment of laminin promotes locomotion of myoblasts over extracellular matrix , 1989, The Journal of cell biology.
[71] E. Sahai,et al. Fibroblast-led collective invasion of carcinoma cells with differing roles for RhoGTPases in leading and following cells , 2007, Nature Cell Biology.
[72] Malcolm S. Steinberg,et al. Reconstruction of Tissues by Dissociated Cells , 1963 .
[73] P. Friedl,et al. Extracellular matrix determinants of proteolytic and non-proteolytic cell migration. , 2011, Trends in cell biology.
[74] L. Preziosi,et al. Modeling the influence of nucleus elasticity on cell invasion in fiber networks and microchannels. , 2013, Journal of theoretical biology.
[75] J. Klarlund,et al. Wounding Induces Motility in Sheets of Corneal Epithelial Cells through Loss of Spatial Constraints , 2004, Journal of Biological Chemistry.
[76] Sanjay Kumar,et al. The mechanical rigidity of the extracellular matrix regulates the structure, motility, and proliferation of glioma cells. , 2009, Cancer research.
[77] Glazier,et al. Simulation of the differential adhesion driven rearrangement of biological cells. , 1993, Physical review. E, Statistical physics, plasmas, fluids, and related interdisciplinary topics.
[78] M. Stack,et al. Multi-step pericellular proteolysis controls the transition from individual to collective cancer cell invasion , 2007, Nature Cell Biology.
[79] Sean P. Palecek,et al. Erratum: Integrin–ligand binding properties govern cell migration speed through cell–substratum adhesiveness , 1997, Nature.
[80] Y. Hegerfeldt,et al. Collective cell movement in primary melanoma explants: plasticity of cell-cell interaction, beta1-integrin function, and migration strategies. , 2002, Cancer research.
[81] Jan Lammerding,et al. Nuclear mechanics during cell migration. , 2011, Current opinion in cell biology.
[82] A. Metters,et al. Synthetic matrix metalloproteinase-sensitive hydrogels for the conduction of tissue regeneration: Engineering cell-invasion characteristics , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[83] Gerhard Christofori,et al. Changing neighbours, changing behaviour: cell adhesion molecule‐mediated signalling during tumour progression , 2003, The EMBO journal.
[84] T. Matsuda,et al. Mathematical simulation of unidirectional tissue formation: in vitro transanastomotic endothelialization model. , 1996, Journal of biomaterials science. Polymer edition.
[85] J A Sherratt,et al. Mathematical modelling of anisotropy in fibrous connective tissue. , 1999, Mathematical biosciences.
[86] Olga Ilina,et al. Two-photon laser-generated microtracks in 3D collagen lattices: principles of MMP-dependent and -independent collective cancer cell invasion , 2011, Physical biology.
[87] P. Friedl,et al. The biology of cell locomotion within three-dimensional extracellular matrix , 2000, Cellular and Molecular Life Sciences CMLS.
[88] P J Sammak,et al. How do injured cells communicate with the surviving cell monolayer? , 1997, Journal of cell science.
[89] A. Larue,et al. VEGF regulates cell behavior during vasculogenesis. , 2000, Developmental biology.
[90] J. Ling,et al. Wound-induced HB-EGF ectodomain shedding and EGFR activation in corneal epithelial cells. , 2004, Investigative ophthalmology & visual science.
[91] Benjamin Geiger,et al. Induction of cell polarization and migration by a gradient of nanoscale variations in adhesive ligand spacing. , 2008, Nano letters.
[92] Roeland M. H. Merks,et al. The Glazier-Graner-Hogeweg Model: Extensions, Future Directions, and Opportunities for Further Study , 2007 .
[93] D. L. Sean McElwain,et al. Travelling waves in a wound healing assay , 2004, Appl. Math. Lett..
[94] V. V. van Hinsbergh,et al. Involvement of RhoA/Rho Kinase Signaling in VEGF-Induced Endothelial Cell Migration and Angiogenesis In Vitro , 2003, Arteriosclerosis, thrombosis, and vascular biology.
[95] M. S. Steinberg,et al. Does differential adhesion govern self-assembly processes in histogenesis? Equilibrium configurations and the emergence of a hierarchy among populations of embryonic cells. , 1970, The Journal of experimental zoology.
[96] F. Malavasi,et al. CD157, the Janus of CD38 but with a unique personality , 2002, Cell biochemistry and function.
[97] G. Borisy,et al. Cell Migration: Integrating Signals from Front to Back , 2003, Science.
[98] Vartan Kurtcuoglu,et al. Cell Image Velocimetry (CIV): boosting the automated quantification of cell migration in wound healing assays. , 2012, Integrative biology : quantitative biosciences from nano to macro.
[99] Gabriel Fenteany,et al. Signaling pathways and cell mechanics involved in wound closure by epithelial cell sheets , 2000, Current Biology.
[100] Paul Martin,et al. Wound Healing--Aiming for Perfect Skin Regeneration , 1997, Science.
[101] Luigi Preziosi,et al. Multiscale Developments of the Cellular Potts Model , 2012, Multiscale Model. Simul..
[102] Brenda M Rubenstein,et al. The role of extracellular matrix in glioma invasion: a cellular Potts model approach. , 2008, Biophysical journal.
[103] Thomas D Pollard,et al. Cellular Motility Driven by Assembly and Disassembly of Actin Filaments , 2003, Cell.
[104] Gabor Forgacs,et al. The interplay of cell-cell and cell-matrix interactions in the invasive properties of brain tumors. , 2006, Biophysical journal.
[105] Olga Ilina,et al. Two-photon laser-generated microtracks in 3D collagen lattices: principles of MMP-dependent and -independent collective cancer cell invasion , 2011 .
[106] Peter Friedl,et al. Compensation mechanism in tumor cell migration , 2003, The Journal of cell biology.
[107] F. Malavasi,et al. Ectoenzymes and innate immunity: the role of human CD157 in leukocyte trafficking. , 2009, Frontiers in bioscience.
[108] G. Dunn,et al. Contact guidance on oriented collagen gels. , 1978, Experimental cell research.
[109] Paul Martin,et al. Actin cables and epidermal movement in embryonic wound healing , 1992, Nature.
[110] George Oster,et al. Polymer Motors: Pushing out the Front and Pulling up the Back , 2003, Current Biology.
[111] Michael Beil,et al. Sphingosylphosphorylcholine regulates keratin network architecture and visco-elastic properties of human cancer cells , 2003, Nature Cell Biology.
[112] Amy Brock,et al. Geometric determinants of directional cell motility revealed using microcontact printing. , 2003, Langmuir : the ACS journal of surfaces and colloids.
[113] Stephanie Alexander,et al. Cancer Invasion and the Microenvironment: Plasticity and Reciprocity , 2011, Cell.
[114] V. Klepeis,et al. P2Y receptors play a critical role in epithelial cell communication and migration , 2004, Journal of cellular biochemistry.
[115] D. Stupack. The biology of integrins. , 2007, Oncology.
[116] R T Tranquillo,et al. Continuum model of fibroblast-driven wound contraction: inflammation-mediation. , 1992, Journal of theoretical biology.
[117] Xiaodong Feng,et al. Angiogenesis in wound healing. , 2000, The journal of investigative dermatology. Symposium proceedings.
[118] R.M. Capito,et al. Scaffold-based articular cartilage repair , 2003, IEEE Engineering in Medicine and Biology Magazine.
[119] D. Katsaros,et al. Functional role and prognostic significance of CD157 in ovarian carcinoma. , 2010, Journal of the National Cancer Institute.
[120] L. Preziosi,et al. Modeling the early stages of vascular network assembly , 2003, The EMBO journal.
[121] L. Preziosi,et al. A cellular Potts model for the MMP-dependent and -independent cancer cell migration in matrix microtracks of different dimensions , 2013, Computational Mechanics.
[122] E. Ising. Beitrag zur Theorie des Ferromagnetismus , 1925 .
[123] P. Friedl,et al. Interstitial cell migration: integrin-dependent and alternative adhesion mechanisms , 2009, Cell and Tissue Research.
[124] P. Chavrier,et al. Collective migration of an epithelial monolayer in response to a model wound , 2007, Proceedings of the National Academy of Sciences.
[125] K. Zänker,et al. CD4+ T lymphocytes migrating in three‐dimensional collagen lattices lack focal adhesions and utilize β1 integrin‐independent strategies for polarization, interaction with collagen fibers and locomotion , 1998, European journal of immunology.
[126] P. Maini,et al. Biological implications of a discrete mathematical model for collagen deposition and alignment in dermal wound repair. , 2000, IMA journal of mathematics applied in medicine and biology.
[127] Claudio G. Rolli,et al. Impact of Tumor Cell Cytoskeleton Organization on Invasiveness and Migration: A Microchannel-Based Approach , 2010, PloS one.
[128] P. Friedl,et al. Collective cell migration in morphogenesis, regeneration and cancer , 2009, Nature Reviews Molecular Cell Biology.
[129] Paul Martin,et al. Healing of incisional wounds in the embryonic chick wing bud: characterization of the actin purse-string and demonstration of a requirement for Rho activation , 1996, The Journal of cell biology.
[130] K. Sundfeldt. Cell–cell adhesion in the normal ovary and ovarian tumors of epithelial origin; an exception to the rule , 2003, Molecular and Cellular Endocrinology.
[131] Christopher M Waters,et al. Mathematical modeling of airway epithelial wound closure during cyclic mechanical strain. , 2004, Journal of applied physiology.
[132] J. P. Robinson,et al. Time-lapse confocal reflection microscopy of collagen fibrillogenesis and extracellular matrix assembly in vitro. , 2000, Biopolymers.
[133] S. L. Davis,et al. Apoptosis factor EI24/PIG8 is a novel endoplasmic reticulum-localized Bcl-2-binding protein which is associated with suppression of breast cancer invasiveness. , 2005, Cancer research.
[134] Sean P. Palecek,et al. Integrin-ligand binding properties govern cell migration speed through cell-substratum adhesiveness , 1997, Nature.
[135] Micah Dembo,et al. Influence of type I collagen surface density on fibroblast spreading, motility, and contractility. , 2003, Biophysical journal.
[136] Steven C George,et al. Noninvasive assessment of collagen gel microstructure and mechanics using multiphoton microscopy. , 2007, Biophysical journal.
[137] Marcella Trombetta,et al. A G-CSF functionalized PLLA scaffold for wound repair: An in vitro preliminary study , 2010, 2010 Annual International Conference of the IEEE Engineering in Medicine and Biology.
[138] T. Hirano,et al. Deletion of bone marrow stromal cell antigen-1 (CD157) gene impaired systemic thymus independent-2 antigen-induced IgG3 and mucosal TD antigen-elicited IgA responses. , 1998, Journal of immunology.
[139] G. Christofori,et al. Cell adhesion in tumor invasion and metastasis: loss of the glue is not enough. , 2001, Biochimica et biophysica acta.
[140] Roeland M. H. Merks,et al. Contact-Inhibited Chemotaxis in De Novo and Sprouting Blood-Vessel Growth , 2005, PLoS Comput. Biol..
[141] J. Segall,et al. Intravital imaging of cell movement in tumours , 2003, Nature Reviews Cancer.
[142] Steven McDougall,et al. Fibroblast migration and collagen deposition during dermal wound healing: mathematical modelling and clinical implications , 2006, Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences.
[143] David A Tirrell,et al. Boundary crossing in epithelial wound healing , 2010, Proceedings of the National Academy of Sciences.
[144] J. Hubbell,et al. Molecularly engineered PEG hydrogels: a novel model system for proteolytically mediated cell migration. , 2005, Biophysical journal.