A multisubunit 3′ end processing factor from yeast containing poly(A) polymerase and homologues of the subunits of mammalian cleavage and polyadenylation specificity factor

Polyadenylation is the second step in 3′ end formation of most eukaryotic mRNAs. In Saccharomyces cerevisiae, this step requires three trans‐acting factors: poly(A) polymerase (Pap1p), cleavage factor I (CF I) and polyadenylation factor I (PF I). Here, we describe the purification and subunit composition of a multiprotein complex containing Pap1p and PF I activities. PF I–Pap1p was purified to homogeneity by complementation of extracts mutant in the Fip1p subunit of PF I. In addition to Fip1p and Pap1p, the factor comprises homologues of all four subunits of mammalian cleavage and polyadenylation specificity factor (CPSF), as well as Pta1p, which previously has been implicated in pre‐tRNA processing, and several as yet uncharacterized proteins. As expected for a PF I subunit, pta1‐1 mutant extracts are deficient for polyadenylation in vitro. PF I also appears to be functionally related to CPSF, as it polyadenylates a substrate RNA more efficiently than Pap1p alone. Possibly, the observed interaction of the complex with RNA tethers Pap1p to its substrate.

[1]  L. Minvielle-Sebastia,et al.  The major yeast poly(A)-binding protein is associated with cleavage factor IA and functions in premessenger RNA 3'-end formation. , 1997, Proceedings of the National Academy of Sciences of the United States of America.

[2]  L. Minvielle-Sebastia,et al.  The 30-kD subunit of mammalian cleavage and polyadenylation specificity factor and its yeast homolog are RNA-binding zinc finger proteins. , 1997, Genes & development.

[3]  Marco M. Kessler,et al.  Cleavage Factor II of Saccharomyces cerevisiaeContains Homologues to Subunits of the Mammalian Cleavage/ Polyadenylation Specificity Factor and Exhibits Sequence-specific, ATP-dependent Interaction with Precursor RNA* , 1997, The Journal of Biological Chemistry.

[4]  A. Baudin-Baillieu,et al.  Construction of a Yeast Strain Deleted for the TRP1 Promoter and Coding Region that Enhances the Efficiency of the Polymerase Chain Reaction‐Disruption Method , 1997, Yeast.

[5]  M. Minet,et al.  PCF11 encodes a third protein component of yeast cleavage and polyadenylation factor I , 1997, Molecular and cellular biology.

[6]  F. Sherman,et al.  3'-end-forming signals of yeast mRNA. , 1996, Trends in biochemical sciences.

[7]  H. Domdey,et al.  Dependence of Yeast Pre-mRNA 3′-End Processing on CFT1: A Sequence Homolog of the Mammalian AAUAAA Binding Factor , 1996, Science.

[8]  C. Guthrie,et al.  Essential Yeast Protein with Unexpected Similarity to Subunits of Mammalian Cleavage and Polyadenylation Specificity Factor (CPSF) , 1996, Science.

[9]  L. Minvielle-Sebastia,et al.  Sequence Similarity Between the 73-Kilodalton Protein of Mammalian CPSF and a Subunit of Yeast Polyadenylation Factor I , 1996, Science.

[10]  C. Moore,et al.  Purification of the Saccharomyces cerevisiae Cleavage/Polyadenylation Factor I , 1996, The Journal of Biological Chemistry.

[11]  E. Wahle,et al.  The biochemistry of polyadenylation. , 1996, Trends in biochemical sciences.

[12]  D. Tollervey,et al.  Nuclear pore proteins are involved in the biogenesis of functional tRNA. , 1996, The EMBO journal.

[13]  W. Keller,et al.  Purification and Characterization of Human Cleavage Factor I Involved in the 3′ End Processing of Messenger RNA Precursors (*) , 1996, The Journal of Biological Chemistry.

[14]  K. Murthy,et al.  The 160-kD subunit of human cleavage-polyadenylation specificity factor coordinates pre-mRNA 3'-end formation. , 1995, Genes & development.

[15]  W. Keller,et al.  Cloning of cDNAs encoding the 160 kDa subunit of the bovine cleavage and polyadenylation specificity factor. , 1995, Nucleic acids research.

[16]  L. Minvielle-Sebastia,et al.  The FIP1 gene encodes a component of a yeast pre-mRNA polyadenylation factor that directly interacts with poly(A) polymerase , 1995, Cell.

[17]  L. Minvielle-Sebastia,et al.  RNA14 and RNA15 proteins as components of a yeast pre-mRNA 3'-end processing factor. , 1994, Science.

[18]  J. Manley,et al.  A polyadenylation factor subunit is the human homologue of theDrosophila suppressor of forked protein , 1994, Nature.

[19]  H. Hauri,et al.  Characterization of cleavage and polyadenylation specificity factor and cloning of its 100-kilodalton subunit , 1994, Molecular and cellular biology.

[20]  Y. Nogi,et al.  RRN6 and RRN7 encode subunits of a multiprotein complex essential for the initiation of rDNA transcription by RNA polymerase I in Saccharomyces cerevisiae. , 1994, Genes & development.

[21]  T. Shenk,et al.  The 64-kilodalton subunit of the CstF polyadenylation factor binds to pre-mRNAs downstream of the cleavage site and influences cleavage site location , 1994, Molecular and cellular biology.

[22]  S. Altschul,et al.  Issues in searching molecular sequence databases , 1994, Nature Genetics.

[23]  O. Ozier-Kalogeropoulos,et al.  A simple and efficient method for direct gene deletion in Saccharomyces cerevisiae. , 1993, Nucleic acids research.

[24]  E. Wahle,et al.  Assembly of a processive messenger RNA polyadenylation complex. , 1993, The EMBO journal.

[25]  C. Peebles,et al.  PTA1, an essential gene of Saccharomyces cerevisiae affecting pre-tRNA processing , 1992, Molecular and cellular biology.

[26]  C. Moore,et al.  Separation of factors required for cleavage and polyadenylation of yeast pre-mRNA , 1992, Molecular and cellular biology.

[27]  V. Simanis Guide to yeast genetics and molecular biology: edited by Christine Guthrie and Gerald R. Fink, Academic Press, 1991. £35.50/$49.95 (xxi + 933 pages) ISBN 0 12 310670 2 , 1992 .

[28]  J. Manley,et al.  The human 64-kDa polyadenylylation factor contains a ribonucleoprotein-type RNA binding domain and unusual auxiliary motifs. , 1992, Proceedings of the National Academy of Sciences of the United States of America.

[29]  J. Lingner,et al.  Cloning and expression of the essential gene for poly(A) polymerase from S. cerevisiae , 1991, Nature.

[30]  G. Christofori,et al.  Cleavage and polyadenylation factor CPF specifically interacts with the pre‐mRNA 3′ processing signal AAUAAA. , 1991, The EMBO journal.

[31]  E. Wahle,et al.  Purification of the cleavage and polyadenylation factor involved in the 3'-processing of messenger RNA precursors. , 1991, The Journal of biological chemistry.

[32]  E. Wahle A novel poly(A)-binding protein acts as a specificity factor in the second phase of messenger RNA polyadenylation , 1991, Cell.

[33]  M. Labouesse,et al.  A family of low and high copy replicative, integrative and single‐stranded S. cerevisiae/E. coli shuttle vectors , 1991, Yeast.

[34]  J. Lingner,et al.  Purification and characterization of poly(A) polymerase from Saccharomyces cerevisiae. , 1991, The Journal of biological chemistry.

[35]  Janina Maier,et al.  Guide to yeast genetics and molecular biology. , 1991, Methods in enzymology.

[36]  J. Butler,et al.  RNA processing in vitro produces mature 3' ends of a variety of Saccharomyces cerevisiae mRNAs , 1990, Molecular and cellular biology.

[37]  J. Manley,et al.  Four factors are required for 3'-end cleavage of pre-mRNAs. , 1989, Genes & development.

[38]  M. Ashburner A Laboratory manual , 1989 .

[39]  M. Wigler,et al.  Purification of a RAS-responsive adenylyl cyclase complex from Saccharomyces cerevisiae by use of an epitope addition method , 1988, Molecular and cellular biology.

[40]  J. Sambrook,et al.  Molecular Cloning: A Laboratory Manual , 2001 .

[41]  A. Hopper,et al.  A yeast mutant which accumulates precursor tRNAs , 1978, Cell.

[42]  E. Keller,et al.  The polyadenylate polymerases from yeast. , 1975, The Journal of biological chemistry.