Insight into the primary mode of action of TiO2 nanoparticles on Escherichia coli in the dark

Large‐scale production and incorporation of titanium dioxide nanoparticles (NP‐TiO2) in consumer products leads to their potential release into the environment and raises the question of their toxicity. The bactericidal mechanism of NP‐TiO2 under UV light is known to involve oxidative stress due to the generation of reactive oxygen species. In the dark, several studies revealed that NP‐TiO2 can exert toxicological effects. However, the mode of action of these nanoparticles is still controversial. In the present study, we used a combination of fluorescent probes to show that NP‐TiO2 causes Escherichia coli membrane depolarization and loss of integrity, leading to higher cell permeability. Using both transcriptomic and proteomic global approaches we showed that this phenomenon translates into a cellular response to osmotic stress, metabolism of cell envelope components and uptake/metabolism of endogenous and exogenous compounds. This primary mechanism of bacterial NP‐TiO2 toxicity is supported by the observed massive cell leakage of K+/Mg2+ concomitant with the entrance of extracellular Na+, and by the depletion of intracellular ATP level.

[1]  Alex E. Lash,et al.  Gene Expression Omnibus: NCBI gene expression and hybridization array data repository , 2002, Nucleic Acids Res..

[2]  W. Epstein,et al.  Osmotic control of kdp operon expression in Escherichia coli. , 1981, Proceedings of the National Academy of Sciences of the United States of America.

[3]  Y. Benjamini,et al.  Controlling the false discovery rate: a practical and powerful approach to multiple testing , 1995 .

[4]  Francisco Bolívar,et al.  The effect of heating rate on Escherichia coli metabolism, physiological stress, transcriptional response, and production of temperature‐induced recombinant protein: A scale‐down study , 2009, Biotechnology and bioengineering.

[5]  J. Reyes,et al.  Transcription of glutamine synthetase genes (glnA and glnN) from the cyanobacterium Synechocystis sp. strain PCC 6803 is differently regulated in response to nitrogen availability , 1997, Journal of bacteriology.

[6]  Howard M. Shapiro,et al.  Multiparameter Flow Cytometric Analysis of Antibiotic Effects on Membrane Potential, Membrane Permeability, and Bacterial Counts of Staphylococcus aureus andMicrococcus luteus , 2000, Antimicrobial Agents and Chemotherapy.

[7]  A. Conter,et al.  Survival of Escherichia coli during long-term starvation: effects of aeration, NaCl, and the rpoS and osmC gene products. , 2001, Research in microbiology.

[8]  A. Strøm,et al.  Trehalose metabolism in Escherichia coli: stress protection and stress regulation of gene expression , 1993, Molecular microbiology.

[9]  D. J. Naylor,et al.  Proteome-wide Analysis of Chaperonin-Dependent Protein Folding in Escherichia coli , 2005, Cell.

[10]  Rafael A. Irizarry,et al.  Bioinformatics and Computational Biology Solutions using R and Bioconductor , 2005 .

[11]  A. Conter,et al.  NhaR and RcsB Independently Regulate the osmCp1 Promoter of Escherichia coli at Overlapping Regulatory Sites , 2003, Journal of bacteriology.

[12]  C. Adessi,et al.  Improvement of the solubilization of proteins in two‐dimensional electrophoresis with immobilized pH gradients , 2006, Electrophoresis.

[13]  R. Poorman,et al.  Identification and characterization of dppA, an Escherichia coli gene encoding a periplasmic dipeptide transport protein , 1991, Journal of bacteriology.

[14]  Terence P. Speed,et al.  A comparison of normalization methods for high density oligonucleotide array data based on variance and bias , 2003, Bioinform..

[15]  Gordon K. Smyth,et al.  limma: Linear Models for Microarray Data , 2005 .

[16]  J. Jenkins,et al.  The structure of OmpF porin in a tetragonal crystal form. , 1995, Structure.

[17]  Kiyoko F. Aoki-Kinoshita,et al.  From genomics to chemical genomics: new developments in KEGG , 2005, Nucleic Acids Res..

[18]  M. Record,et al.  Roles of cytoplasmic osmolytes, water, and crowding in the response of Escherichia coli to osmotic stress: biophysical basis of osmoprotection by glycine betaine. , 2003, Biochemistry.

[19]  Guido Sanguinetti,et al.  Dynamics of a starvation-to-surfeit shift: a transcriptomic and modelling analysis of the bacterial response to zinc reveals transient behaviour of the Fur and SoxS regulators. , 2012, Microbiology.

[20]  M. Valvano,et al.  The GalF protein of Escherichia coli is not a UDP‐glucose pyrophosphorylase but interacts with the GalU protein possibly to regulate cellular levels of UDP‐glucose , 1996, Molecular microbiology.

[21]  Y. Takahashi,et al.  Functional assignment of the ORF2-iscS-iscU-iscA-hscB-hscA-fdx-ORF3 gene cluster involved in the assembly of Fe-S clusters in Escherichia coli. , 1999, Journal of biochemistry.

[22]  L. A. Rajan,et al.  Functional Characterization of Trehalose Biosynthesis Genes from E. coli: An Osmolyte Involved in Stress Tolerance , 2010, Molecular biotechnology.

[23]  Jack A. M. Leunissen,et al.  Turning CFCs into salt. , 1996, Nucleic Acids Res..

[24]  J. Renaut,et al.  Physiological response and differential leaf proteome pattern in the European invasive Asteraceae Solidago canadensis colonizing a former cokery soil. , 2012, Journal of proteomics.

[25]  E Gianazza,et al.  Immobilized pH gradients. , 1988, Trends in biochemical sciences.

[26]  Ivana Fenoglio,et al.  Non-UV-induced radical reactions at the surface of TiO2 nanoparticles that may trigger toxic responses. , 2009, Chemistry.

[27]  M. Abdel-Sater,et al.  Growth and enzyme activities of fungi and bacteria in soil salinized with sodium chloride , 1994, Folia Microbiologica.

[28]  Pedro J J Alvarez,et al.  Comparative eco-toxicity of nanoscale TiO2, SiO2, and ZnO water suspensions. , 2006, Water research.

[29]  Chi-Ming Che,et al.  Proteomic analysis of the mode of antibacterial action of silver nanoparticles. , 2006, Journal of proteome research.

[30]  Hajime Unno,et al.  Application of glutaraldehyde for the staining of esterase-active cells with carboxyfluorescein diacetate , 2004, Biotechnology Letters.

[31]  Brad T. Sherman,et al.  DAVID: Database for Annotation, Visualization, and Integrated Discovery , 2003, Genome Biology.

[32]  J. Jung,et al.  Transcription of osmB, a gene encoding an Escherichia coli lipoprotein, is regulated by dual signals. Osmotic stress and stationary phase. , 1990, The Journal of biological chemistry.

[33]  R. Horlacher,et al.  Characterization of TreR, the Major Regulator of the Escherichia coli Trehalose System* , 1997, The Journal of Biological Chemistry.

[34]  P. Reeves,et al.  Biosynthesis of O-antigens: genes and pathways involved in nucleotide sugar precursor synthesis and O-antigen assembly. , 2003, Carbohydrate research.

[35]  Thilo Hofmann,et al.  Nanostructured TiO2: transport behavior and effects on aquatic microbial communities under environmental conditions. , 2009, Environmental science & technology.

[36]  R. Özkanca,et al.  The effect of starvation stress on the porin protein expression of Escherichia coli in lake water , 2002, Letters in applied microbiology.

[37]  Tom Ross,et al.  Ion transport and osmotic adjustment in Escherichia coli in response to ionic and non-ionic osmotica. , 2009, Environmental microbiology.

[38]  Zlatko Trajanoski,et al.  CARMAweb: comprehensive R- and bioconductor-based web service for microarray data analysis , 2006, Nucleic Acids Res..

[39]  George M Church,et al.  A microarray-based antibiotic screen identifies a regulatory role for supercoiling in the osmotic stress response of Escherichia coli. , 2003, Genome research.

[40]  C. Gross,et al.  From the regulation of peptidoglycan synthesis to bacterial growth and morphology , 2011, Nature Reviews Microbiology.

[41]  R. Poole,et al.  Genome-Wide Transcriptional Response of Chemostat-Cultured Escherichia coli to Zinc , 2005, Journal of bacteriology.

[42]  Michael V. Liga,et al.  Antimicrobial nanomaterials for water disinfection and microbial control: potential applications and implications. , 2008, Water research.

[43]  F. Maathuis,et al.  Plasma membrane transport in context - making sense out of complexity. , 1999, Current opinion in plant biology.

[44]  Marie Carrière,et al.  Size-, composition- and shape-dependent toxicological impact of metal oxide nanoparticles and carbon nanotubes toward bacteria. , 2009, Environmental science & technology.

[45]  W. Epstein,et al.  Interdependence of K+ and glutamate accumulation during osmotic adaptation of Escherichia coli. , 1994, The Journal of biological chemistry.

[46]  A. Goldberg,et al.  Trehalose Accumulation during Cellular Stress Protects Cells and Cellular Proteins from Damage by Oxygen Radicals* , 2001, The Journal of Biological Chemistry.

[47]  J. Imlay,et al.  Alkyl Hydroperoxide Reductase Is the Primary Scavenger of Endogenous Hydrogen Peroxide in Escherichia coli , 2001, Journal of bacteriology.

[48]  E. Stadtman,et al.  Regulation of glutamine synthetase. I. Purification and properties of glutamine synthetase from Escherichia coli. , 1967, Archives of biochemistry and biophysics.

[49]  Francisco Bolívar,et al.  Adaptation for fast growth on glucose by differential expression of central carbon metabolism and gal regulon genes in an Escherichia coli strain lacking the phosphoenolpyruvate:carbohydrate phosphotransferase system. , 2005, Metabolic engineering.

[50]  M. M. Bradford A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. , 1976, Analytical biochemistry.

[51]  A. Ballal,et al.  The Kdp-ATPase system and its regulation , 2007, Journal of Biosciences.

[52]  Brian F. Pfleger,et al.  Membrane Stresses Induced by Overproduction of Free Fatty Acids in Escherichia coli , 2011, Applied and Environmental Microbiology.

[53]  C. Gutierrez,et al.  Growth‐phase‐dependent expression of the osmotically inducible gene osmC of Escherichia coli K‐12 , 1996, Molecular microbiology.

[54]  D. Nikolov,et al.  Structural and functional features of the Escherichia coli hydroperoxide resistance protein OsmC , 2003, Protein science : a publication of the Protein Society.

[55]  Gordon K Smyth,et al.  Statistical Applications in Genetics and Molecular Biology Linear Models and Empirical Bayes Methods for Assessing Differential Expression in Microarray Experiments , 2011 .

[56]  M. McEvoy,et al.  Metal export by CusCFBA, the periplasmic Cu(I)/Ag(I) transport system of Escherichia coli. , 2012, Current topics in membranes.

[57]  Francisco Bolívar,et al.  Transcriptional and metabolic response of recombinant Escherichia coli to spatial dissolved oxygen tension gradients simulated in a scale-down system. , 2006, Biotechnology and bioengineering.

[58]  P. Kamat PHOTOCHEMISTRY ON NONREACTIVE AND REACTIVE (SEMICONDUCTOR) SURFACES , 1993 .

[59]  Brad T. Sherman,et al.  Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists , 2008, Nucleic acids research.

[60]  C. Bunthof,et al.  Rapid Fluorescence Assessment of the Viability of Stressed Lactococcus lactis , 1999, Applied and Environmental Microbiology.

[61]  E. Marcotte,et al.  Insights into the regulation of protein abundance from proteomic and transcriptomic analyses , 2012, Nature Reviews Genetics.

[62]  Antoine M. van Oijen,et al.  Real-time single-molecule observation of rolling-circle DNA replication , 2009, Nucleic acids research.

[63]  H. Yim,et al.  osmY, a new hyperosmotically inducible gene, encodes a periplasmic protein in Escherichia coli , 1992, Journal of bacteriology.

[64]  C. Bunthof,et al.  Fluorescence assessment of Lactococcus lactis viability. , 2000, International journal of food microbiology.

[65]  K. Jung,et al.  Profiling Early Osmostress-Dependent Gene Expression in Escherichia coli Using DNA Macroarrays , 2002, Journal of bacteriology.

[66]  Ireena Bagai,et al.  Direct metal transfer between periplasmic proteins identifies a bacterial copper chaperone. , 2008, Biochemistry.

[67]  Susumu Goto,et al.  KEGG for representation and analysis of molecular networks involving diseases and drugs , 2009, Nucleic Acids Res..

[68]  A. Conter,et al.  Multistress Regulation in Escherichia coli: Expression of osmB Involves Two Independent Promoters Responding either to σS or to the RcsCDB His-Asp Phosphorelay , 2005, Journal of bacteriology.

[69]  A. Kolb,et al.  Transient repressor effect of Fis on the growth phase-regulated osmE promoter of Escherichia coli K12 , 2002, Molecular Genetics and Genomics.

[70]  M K Johnson,et al.  Iron-sulfur proteins: new roles for old clusters. , 1998, Current opinion in chemical biology.

[71]  Arkady B. Khodursky,et al.  Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[72]  F. Bolivar,et al.  New Insights into the Role of Sigma Factor RpoS as Revealed in Escherichia coli Strains Lacking the Phosphoenolpyruvate:Carbohydrate Phosphotransferase System , 2007, Journal of Molecular Microbiology and Biotechnology.

[73]  R Hengge-Aronis,et al.  Identification and molecular analysis of glgS, a novel growth‐phase‐regulated and rpoS‐dependent gene involved in glycogen synthesis in Escherichia coli , 1992, Molecular microbiology.

[74]  Brad T. Sherman,et al.  Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources , 2008, Nature Protocols.

[75]  Francisco Bolívar,et al.  Metabolic and transcriptional response of recombinant Escherichia coli to elevated dissolved carbon dioxide concentrations , 2009, Biotechnology and bioengineering.

[76]  C. Pagnout,et al.  Role of electrostatic interactions in the toxicity of titanium dioxide nanoparticles toward Escherichia coli. , 2012, Colloids and surfaces. B, Biointerfaces.

[77]  N. Majdalani,et al.  The Rcs phosphorelay: a complex signal transduction system. , 2005, Annual review of microbiology.

[78]  Hiroyuki Ogata,et al.  KEGG: Kyoto Encyclopedia of Genes and Genomes , 1999, Nucleic Acids Res..

[79]  K. Jung,et al.  K+ and Ionic Strength Directly Influence the Autophosphorylation Activity of the Putative Turgor Sensor KdpD ofEscherichia coli * , 2000, The Journal of Biological Chemistry.

[80]  A. Elbein,et al.  New insights on trehalose: a multifunctional molecule. , 2003, Glycobiology.

[81]  S. Kaveri,et al.  Identification of target antigens of self‐reactive IgG in intravenous immunoglobulin preparations , 2009, Proteomics.

[82]  C. Higgins,et al.  Uptake of cell wall peptides by Salmonella typhimurium and Escherichia coli , 1987, Journal of bacteriology.

[83]  V. Neuhoff,et al.  Improved staining of proteins in polyacrylamide gels including isoelectric focusing gels with clear background at nanogram sensitivity using Coomassie Brilliant Blue G‐250 and R‐250 , 1988, Electrophoresis.

[84]  Ashutosh Kumar,et al.  Engineered ZnO and TiO(2) nanoparticles induce oxidative stress and DNA damage leading to reduced viability of Escherichia coli. , 2011, Free radical biology & medicine.

[85]  K. Jung,et al.  Time-Dependent Proteome Alterations under Osmotic Stress during Aerobic and Anaerobic Growth in Escherichia coli , 2006, Journal of bacteriology.

[86]  Franck Chauvat,et al.  Cytotoxicity of CeO2 nanoparticles for Escherichia coli. Physico-chemical insight of the cytotoxicity mechanism. , 2006, Environmental science & technology.

[87]  M. Mann,et al.  In-gel digestion for mass spectrometric characterization of proteins and proteomes , 2006, Nature Protocols.