Mass cytometry reveals a conserved immune trajectory of recovery in hospitalized COVID-19 patients

[1]  Mark S. Anderson,et al.  Type I interferon autoantibodies are associated with systemic immune alterations in patients with COVID-19 , 2021, Science Translational Medicine.

[2]  R. Nussbaum,et al.  X-linked recessive TLR7 deficiency in ~1% of men under 60 years old with life-threatening COVID-19 , 2021, Science immunology.

[3]  N. Skoetz,et al.  Systemic corticosteroids for the treatment of COVID-19. , 2021, The Cochrane database of systematic reviews.

[4]  Jordan L. Metcalf,et al.  Immunophenotyping assessment in a COVID-19 cohort (IMPACC): A prospective longitudinal study , 2021, Science immunology.

[5]  Peter J. Godolphin,et al.  Association Between Administration of IL-6 Antagonists and Mortality Among Patients Hospitalized for COVID-19: A Meta-analysis. , 2021, JAMA.

[6]  E. Wherry,et al.  CD8+ T cells contribute to survival in patients with COVID-19 and hematologic cancer , 2021, Nature Medicine.

[7]  M. C. Muenker,et al.  Delayed production of neutralizing antibodies correlates with fatal COVID-19 , 2021, Nature Medicine.

[8]  Steve B Jones,et al.  Tocilizumab in patients admitted to hospital with COVID-19 (RECOVERY): a randomised, controlled, open-label, platform trial , 2021, Lancet.

[9]  J. Fountain,et al.  Latent Class Analysis Reveals COVID-19–related Acute Respiratory Distress Syndrome Subgroups with Differential Responses to Corticosteroids , 2021, American journal of respiratory and critical care medicine.

[10]  I. Douglas,et al.  Tocilizumab in Hospitalized Patients with Severe Covid-19 Pneumonia , 2021, The New England journal of medicine.

[11]  C. Wolf,et al.  Sequelae in Adults at 6 Months After COVID-19 Infection , 2021, JAMA network open.

[12]  E. Wherry,et al.  New-Onset IgG Autoantibodies in Hospitalized Patients with COVID-19 , 2021, medRxiv.

[13]  H. Qiu,et al.  Corticosteroid Therapy Is Associated With Improved Outcome in Critically Ill Patients With COVID-19 With Hyperinflammatory Phenotype , 2020, Chest.

[14]  Elizabeth B White,et al.  Diverse Functional Autoantibodies in Patients with COVID-19 , 2020, Nature.

[15]  Chun Jimmie Ye,et al.  Global Absence and Targeting of Protective Immune States in Severe COVID-19 , 2020, bioRxiv.

[16]  Jacques Fellay,et al.  Inborn errors of type I IFN immunity in patients with life-threatening COVID-19 , 2020, Science.

[17]  Graham M Lord,et al.  Longitudinal immune profiling reveals key myeloid signatures associated with COVID-19 , 2020, Science Immunology.

[18]  R. Nahass,et al.  Impact of tocilizumab administration on mortality in severe COVID-19 , 2020, Scientific Reports.

[19]  Li Yang,et al.  COVID-19: immunopathogenesis and Immunotherapeutics , 2020, Signal Transduction and Targeted Therapy.

[20]  Eric Song,et al.  Longitudinal analyses reveal immunological misfiring in severe COVID-19 , 2020, Nature.

[21]  Sasikanth Manne,et al.  Deep immune profiling of COVID-19 patients reveals distinct immunotypes with therapeutic implications , 2020, Science.

[22]  Pratik Sinha,et al.  Is a "Cytokine Storm" Relevant to COVID-19? , 2020, JAMA internal medicine.

[23]  R. Jiang,et al.  IL-6 promotes PD-L1 expression in monocytes and macrophages by decreasing protein tyrosine phosphatase receptor type O expression in human hepatocellular carcinoma , 2020, Journal for immunotherapy of cancer.

[24]  Kamir J. Hiam,et al.  Systemic dysfunction and plasticity of the immune macroenvironment in cancer models , 2020, Nature Medicine.

[25]  H. Maecker,et al.  Cytokine profile in plasma of severe COVID-19 does not differ from ARDS and sepsis , 2020, medRxiv.

[26]  Carl H. June,et al.  Cytokine release syndrome in severe COVID-19 , 2020, Science.

[27]  M. Chiarini,et al.  Two X‐linked agammaglobulinemia patients develop pneumonia as COVID‐19 manifestation but recover , 2020, Pediatric allergy and immunology : official publication of the European Society of Pediatric Allergy and Immunology.

[28]  R. Trimble COVID-19 Dashboard , 2020 .

[29]  G. Nolan,et al.  Metal-isotope-tagged monoclonal antibodies for high-dimensional mass cytometry , 2018, Nature Protocols.

[30]  Eli R. Zunder,et al.  Palladium-based mass tag cell barcoding with a doublet-filtering scheme and single-cell deconvolution algorithm , 2015, Nature Protocols.

[31]  W. Mitzner,et al.  Foxp3+ Regulatory T Cells Promote Lung Epithelial Proliferation , 2014, Mucosal Immunology.

[32]  L. King,et al.  Regulatory T cells reduce acute lung injury fibroproliferation by decreasing fibrocyte recruitment. , 2013, American journal of respiratory cell and molecular biology.

[33]  Hadley Wickham,et al.  ggplot2 - Elegant Graphics for Data Analysis (2nd Edition) , 2017 .

[34]  W. Lim,et al.  Dexamethasone in Hospitalized Patients with Covid-19 , 2021 .

[35]  R Core Team,et al.  R: A language and environment for statistical computing. , 2014 .

[36]  Cedric E. Ginestet ggplot2: Elegant Graphics for Data Analysis , 2011 .